sp|Q949G3|PDR1_NICPL ----> Pleiotropic drug resistance protein 1
Intron 1 GTTCTTCTGC ... CTGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 1 | 0 | 1 |
| A2 | -1 | 0 | 0 | 0 |
| A3 | 33.33 | 1 | 1 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 42.86 | 10 | 11 | 4 |
| A8 | 51.72 | 7 | 9 | 6 |
| A9 | 73.33 | 2 | 9 | 2 |
| A10 | 37.5 | 10 | 6 | 6 |
>TRINITY_DN45213_c2_g2_i7 from sample A7 / Example spliced isoformGCAAATGGTAAATGAGATGGCGTTGTCCCTTCAGAGCTTTTTCAAAATTCGATGGCAGAAAATGGTACGATGGTAAATTCAAAATTCAAAGTTTGCCTCCAGTGCTATTTCAAAAACAAAACAAGTTCAGTTCGAATTAGTGATGCAGGGCGATGGCAGAAGTTTTCCTTCATAGTATAGTCTAGCAATTATAACGAAAT
TATGTATGACTACATTCATTCCATGCCCCTCGCTAGATGTACTCTTAAAAACAAAAATCCTGTGAGTCATTAGTTTAGATTCTATTCCAGTCCAGATCTTTTCGTCTTCACCAAAAAAAGATTTCAGTTTCCACTGACCTGCTGTTTAGAATCGCTGCAGTTGGGGAACAAATTAGTTTGGAAAATGCTTATGAAAAGAG
ATTCGAGCTGCAAAGAACGCTGTTTTTACTAAACAACTGAGGAAGTTAAGATTCACAGCATTATGTGCGATAAACACGACATTGTCCGCTGGACTACAGAATATAGACATGTTCAAATCAAAATCAAATGCATCGTGGGGAAATCATGTCTTTTATTTGCCTGTGCGGATGCCAATTTCAATGGGAAAGGTGGAGAATCC
TCAGGAATTTGTGAGCAATGCAGTGAGATGGGTATCACCAACATGGCGGAAGATAATATTGAGTAGTTTTTGTTCAAGATGCGGGAACAAATCGAAAAAGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCGGTGGCATCATCAAACCTGGCAGATTGACTCTTCT
CCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAG
GGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACCCGGA
>TRINITY_DN45213_c2_g2_i4 from sample A7 / Example unspliced isoform:GCAAATGGTAAATGAGATGGCGTTGTCCCTTCAGAGCTTTTTCAAAATTCGATGGCAGAAAATGGTACGATGGTAAATTCAAAATTCAAAGTTTGCCTCCAGTGCTATTTCAAAAACAAAACAAGTTCAGTTCGAATTAGTGATGCAGGGCGATGGCAGAAGTTTTCCTTCATAGTATAGTCTAGCAATTATAACGAAAT
TATGTATGACTACATTCATTCCATGCCCCTCGCTAGATGTACTCTTAAAAACAAAAATCCTGTGAGTCATTAGTTTAGATTCTATTCCAGTCCAGATCTTTTCGTCTTCACCAAAAAAAGATTTCAGTTTCCACTGACCTGCTGTTTAGAATCGCTGCAGTTGGGGAACAAATTAGTTTGGAAAATGCTTATGAAAAGAG
ATTCGAGCTGCAAAGAACGCTGTTTTTACTAAACAACTGAGGAAGTTAAGATTCACAGCATTATGTGCGATAAACACGACATTGTCCGCTGGACTACAGgttcttctgctttaaataaaccatccatctgtagttttcaaataatggtgtttaatgataatttctttactcgttgatgatattgtttgaagcaatagatt
aaatctgtgtgcagAATATAGACATGTTCAAATCAAAATCAAATGCATCGTGGGGAAATCATGTCTTTTATTTGCCTGTGCGGATGCCAATTTCAATGGGAAAGGTGGAGAATCCTCAGGAATTTGTGAGCAATGCAGTGAGATGGGTATCACCAACATGGCGGAAGATAATATTGAGTAGTTTTTGTTCAAGATGCGGG
AACAAATCGAAAAAGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCGGTGGCATCATCAAACCTGGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAG
GTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATT
ACTTCATGTTTTACCCGGA
Intron 2 GTATATTTGG ... GCGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.13 | 11.1 | 5.2 | 10.2 |
| A2 | 79.2 | 1.7 | 1.4 | 4.3 |
| A3 | 53.19 | 11.2 | 5.5 | 9.5 |
| A4 | 67.56 | 3.8 | 0.7 | 7.3 |
| A5 | -1 | 2.2 | 0.1 | 0 |
| A6 | 58.11 | 10.9 | 11.1 | 15.8 |
| A7 | 70.21 | 11.7 | 19.8 | 29.2 |
| A8 | 62.48 | 19.2 | 24.1 | 38.4 |
| A9 | 54.56 | 12.5 | 9.7 | 17.6 |
| A10 | 39.28 | 23.1 | 11.5 | 17.5 |
>TRINITY_DN39167_c0_g1_i1 from sample A6 / Example spliced isoformGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAG
GTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGG
AGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAG
ATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAG
ATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
>TRINITY_DN39167_c0_g1_i3 from sample A6 / Example unspliced isoform:GTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCA
ATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGC
AGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGgtatatttggtggtggaggtagaggtataagtggaaatactgttatctcaacctccattcaatgcgtttgcagATTGACTCTTCTCCTAGGCCCGCCTGG
TTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAG
TCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
Intron 3 GTGAGTTCAT ... AGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.22 | 13 | 8 | 7 |
| A2 | 30.03 | 33 | 10.7 | 18.7 |
| A3 | 21.22 | 16 | 5.3 | 4 |
| A4 | 47.9 | 6 | 6.7 | 5.7 |
| A5 | 30.56 | 10 | 4.7 | 4.7 |
| A6 | 31.12 | 39 | 12.7 | 23.7 |
| A7 | 30.7 | 77 | 41.7 | 31 |
| A8 | 16.61 | 31 | 6 | 6.7 |
| A9 | 32.24 | 32 | 16 | 15.7 |
| A10 | 31.78 | 37 | 21 | 14.3 |
>TRINITY_DN132165_c1_g2_i9 from sample A1 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGA
GCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTAATATTTTCAACTAAAAATTGACACGACATGAA
TTTCTATATTGTAAAACAAATGATTAGGAAGAGCAATTTACTGTTCTTCTGTGTGGATGCCCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGG
GAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACT
TCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAACAGAACAGAAACACAATCCCGGGATTTCATTTCAAATATGTATTTGCATTAAAGTCCTAAATAC
>TRINITY_DN132165_c1_g2_i13 from sample A1 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAgtgagttcattttattttcacaggcaggaaaacagatttgcagGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGT
TTTATGTTCAAGATGCGGAACGAATCGAAAAAGTAGATTCAGTTTAAAGGGTCATTTTAATGAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGGAGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGT
CAATTCATTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGTTAAGGGAAAAGGAACACCATGCAGTAAATAGGATTTAACTGCGCAATAGCTTAATATCTTTTTTTTTTTTAGATTTGGACTTTGCACCATCCAAC
Intron 4 GTAGATTCAG ... TTGAATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.38 | 17 | 6 | 18 |
| A2 | 50 | 10 | 6 | 14 |
| A3 | 42.86 | 6 | 3 | 6 |
| A4 | 61.29 | 6 | 9 | 10 |
| A5 | 51.72 | 7 | 7 | 8 |
| A6 | 30.43 | 8 | 7 | 0 |
| A7 | 52.27 | 21 | 31 | 15 |
| A8 | 53.49 | 20 | 24 | 22 |
| A9 | 44.68 | 13 | 12 | 9 |
| A10 | 42.86 | 26 | 17 | 22 |
>TRINITY_DN39167_c0_g1_i3 from sample A6 / Example spliced isoformGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCA
ATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGC
AGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGG
TTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAG
TCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
>TRINITY_DN39167_c0_g1_i11 from sample A6 / Example unspliced isoform:GTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCA
ATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAgtagattcagtttaaagggtcattttaattaattgtctcattggtttatatatgctgattttcagagggagaaaca
caaatatagagaagatttttcagctttctttcttggatttttcctcttagattaattttgatcgattaagttggatttgtttttatcaacgtcaattcattattggttgaaaattcttgaaatttgaatccagAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTAT
GTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGG
CCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCT
TCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
Intron 5 GTGAGTTCAT ... ATTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.94 | 13 | 15 | 12 |
| A2 | 50.38 | 33 | 32 | 35 |
| A3 | 55.56 | 16 | 21 | 19 |
| A4 | 57.14 | 6 | 9 | 7 |
| A5 | 41.18 | 10 | 8 | 6 |
| A6 | 42.22 | 39 | 26 | 31 |
| A7 | 47.08 | 77 | 81 | 56 |
| A8 | 44.64 | 31 | 26 | 24 |
| A9 | 46.67 | 32 | 29 | 27 |
| A10 | 43.94 | 37 | 34 | 24 |
>TRINITY_DN132165_c1_g2_i9 from sample A1 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGA
GCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTAATATTTTCAACTAAAAATTGACACGACATGAA
TTTCTATATTGTAAAACAAATGATTAGGAAGAGCAATTTACTGTTCTTCTGTGTGGATGCCCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGG
GAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACT
TCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAACAGAACAGAAACACAATCCCGGGATTTCATTTCAAATATGTATTTGCATTAAAGTCCTAAATAC
>TRINITY_DN132165_c1_g2_i4 from sample A1 / Example unspliced isoform:CTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAgtgagttcattttattttcacagGTAGGCAAACAAATTTGTGAG
CAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAA
GCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCT
GGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGG
AGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAACAGAACAGAAACACAATCCCGGGATTTCATTTCAAATATGTATTTGCATTAAAG
TCCTAAATAC
Intron 6 GTGAGATTCC ... TTATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.69 | 51 | 23 | 2 |
| A2 | 13.85 | 28 | 7 | 2 |
| A3 | 23.33 | 46 | 23 | 5 |
| A4 | 17.81 | 30 | 10 | 3 |
| A5 | 6.67 | 14 | 1 | 1 |
| A6 | 12.33 | 32 | 3 | 6 |
| A7 | 17.56 | 54 | 15 | 8 |
| A8 | 14.02 | 46 | 9 | 6 |
| A9 | 15.86 | 61 | 13 | 10 |
| A10 | 22.91 | 69 | 29 | 12 |
>TRINITY_DN114155_c1_g1_i5 from sample A3 / Example spliced isoformGTTGTTCTCATTAAAAGAAATTGGAAAAGTTGACCTACATCCTCTTCACCCAACAGTATATATGGCCTAACATTCTAAACTACGAGCATTTGGAAACATTGTTTCCATCGATTTCACATTTTGATATTGAGAGAAAACAACGGATCGCTGTCTCATATTTATGGAGAGGACAGTGTGGGAGGTCATTTAATACAGCCGTT
GGTTACAGCTGAGATATTCGGCATCCGTTGGCTGTGAGAGTAAGTGAAAAGACACTTACGAGTAAACCCAGAGGATTAGTTGGTAGAGAAATGCTGCTCAGCTAACATAATAAATGGCATGCATTTTATCTTCACAGCTAGAAGTTGAACCAGTCCCACATGTGCTGTGCTGCTTACTTAGATTTATGATGAACAGAACC
CTAATCTCTAAGAAGCTCTGCTTTGAATCCCATGAGTCTACAGGGAGAAATGCTGTGAAGTAGATTAGGTCTGACATTGTGTGGGCAAGGGTGATAATAGATCTTCTGTTATCATCAGCTTCAGAGAATGCAGGGCTCTGGAGAACTTAGGAGATCAGGGAGTATACGTCCTTCTTCATTGTGGGGATCTGGCACTAGTA
CCGGCCATGACATGATTAGTGTTTTTTCCAAAGCCTCGACGCGTCGAGGCGAGGAGGAAGAACAGGCGCTCACTTGGGCTGCCCTTGAGCGCCTCCCCACTTACAATCGAGTTCGGAAGGGTATTATTCATAACGTTTTAGGAGAGCAATGTGAGATGGATATTGCCAATCTTAGCTTCCATGATCGCCAGCTCCTGCTC
GACAGGCTCTTCAATATGGCGGACGATAATACTGAGCAGTTTTTGTTCAAGATGCGGGAACGAATCGACAAAGTTGGACTGAGCCTGCCGAGGATCGAAGTGCGTTATCAACAGTTGAGCGTGGAGGCTGATGTCTATGTAGGAAGCAGAGCCTTACCCACCATACCTAACTATATATTCAATATGACAGAGGCTTTAAT
GAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCAATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATT
TAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATG
AAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATC
TACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAAT
CTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGA
AGGGATAGTCATCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGA
CGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTT
GGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTT
CTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGG
GGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTC
CCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGGCCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGA
GCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCC
GTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGAT
TAGATGCCCGTGCAGCGGCTATTATCATGCGAACAGTGAGGAACATCGTGGACACAGGGCGAACCATTGTTTGCACGATCCATCAACCCAGTATCGATATCTTTGAAGCCTTCGATGAGTTATTTTTAATGAAGCGAGGGGGTCAGTTGATATACGCGGGGCCATTGGGTCGAAATTCCCACAAACTTGTGGAGTACCTG
TCGAAAGTTGAAGGAGTTCCCCCTATAAAAGACGGGTATAACCCGGCTACGTGGATGTTGGAAGTGACCTCCATGTCCGAGGAACGCCGTCTGGGGGTCGACTTTGCTGAGGTTTATCAGTCATCAGATTTGTATAAACGAAACATAGAACTGATAGACCATTTGAGCCAGCCAGCTCCAGACTCGAGCGATCTTGATTT
CGCAACGAAATATTCTCAGCCTTCCCTGGAGCAGTTCAGGGCCTGCCTATGGAAGCAGCATTGGTCCTACTGGCGGAATCCTCACTACACTGCAGTGAGATTCTTCTTCACCACAATTATCTCGCTGATGTTCGGTACTATCTGTTGGAAATTTGGAACCAAGAGGAGTAAACAGCAGGACGTCCTAAACGCTATGGGAT
CATTGTATGCTGCCGTTCTCTTCCTGGGAGTAACCAATTCGTCTTCCGTGCAACCCGTTATTTCGGTGGAAAGAATGGTCGTCTACCGTGAAAAGGCTGCTGGAATGTATTCAGCTCTTCCATACGCTTTTGCTCAGGTGGTAATCGAGCTTCCATATGTACTGGTCCAAACCATCATCTACAGTTCGATCTTTTACTCC
ATGGCCGCCTTTGAGTGGACGGCAGTCAAATTCCTCTGGTATTTCTACTTCCTGTATTTCACACTCTTGTATTTCACGTTCTTCGGAATGATGAACGTGGCAATCACTCCAAATCACAACGTTGCTGCTATTGCTTCTGCTCCCTTCTTCATGCTGTGGAATCTCTTCTCAGGTTTTATGATTCCTCACCGGATGATTCC
TGTGTGGTGGAGATGGTATTATTGGCTGAATCCTGTTGCCTGGTCACTGTATGGGCTTCTGACTTCTCAATATGGTAATGTGGAGACGAGTTTAAAAATGACAAACGGGAAGCATCAGCCGGTGAAACATTTCCTCAGAGAGTATTTCGGATACCATGAAGAGTTTGTGGGAGTTGCAGGGGTTGCATTGCTGGGTTTCT
GCCTTCTCTTTGGCTTCGTTTTCGCCCTCGGAATCAAGCATCTCAACTTTCAAAGGCGATAGACTCTGAATCTCTGCACTGTGGTATCCTTACCTGTAAATTAAGTCAAGATACTCATTGACAAAAGTACTAGAATGCCACAATAAAGCAGTAAGCTGTTTTGTTCCGGTACAAAAATAATTAAATTCATAAAATCTTCA
ACAATAACGCTGGTTCATCATCATAAATATAATAATCTTAATCATGATAATTTGTAATTAAGTATTCTCAAAAAATGAAAAACAAATTTC
>TRINITY_DN114155_c1_g1_i7 from sample A3 / Example unspliced isoform:GTTGTTCTCATTAAAAGAAATTGGAAAAGTTGACCTACATCCTCTTCACCCAACAGTATATATGGCCTAACATTCTAAACTACGAGCATTTGGAAACATTGTTTCCATCGATTTCACATTTTGATATTGAGAGAAAACAACGGATCGCTGTCTCATATTTATGGAGAGGACAGTGTGGGAGGTCATTTAATACAGCCGTT
GGTTACAGCTGAGATATTCGGCATCCGTTGGCTGTGAGAGTAAGTGAAAAGACACTTACGAGTAAACCCAGAGGATTAGTTGGTAGAGAAATGCTGCTCAGCTAACATAATAAATGGCATGCATTTTATCTTCACAGCTAGAAGTTGAACCAGTCCCACATGTGCTGTGCTGCTTACTTAGATTTATGATGAACAGAACC
CTAATCTCTAAGAAGCTCTGCTTTGAATCCCATGAGTCTACAGGGAGAAATGCTGTGAAGTAGATTAGGTCTGACATTGTGTGGGCAAGGGTGATAATAGATCTTCTGTTATCATCAGCTTCAGAGAATGCAGGGCTCTGGAGAACTTAGGAGATCAGGGAGTATACGTCCTTCTTCATTGTGGGGATCTGGCACTAGTA
CCGGCCATGACATGATTAGTGTTTTTTCCAAAGCCTCGACGCGTCGAGGCGAGGAGGAAGAACAGGCGCTCACTTGGGCTGCCCTTGAGCGCCTCCCCACTTACAATCGAGTTCGGAAGGGTATTATTCATAACGTTTTAGGAGAGCAATGTGAGATGGATATTGCCAATCTTAGCTTCCATGATCGCCAGCTCCTGCTC
GACAGGCTCTTCAATATGGCGGACGATAATACTGAGCAGTTTTTGTTCAAGATGCGGGAACGAATCGACAAAGTTGGACTGAGCCTGCCGAGGATCGAAGTGCGTTATCAACAGTTGAGCGTGGAGGCTGATGTCTATGTAGGAAGCAGAGCCTTACCCACCATACCTAACTATATATTCAATATGACAGAGGCTTTAAT
GAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCAATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATT
TAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATG
AAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATC
TACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAAT
CTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGA
AGGGATAGTCATCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGA
CGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTT
GGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTT
CTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGG
GGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTC
CCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGGCCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGA
GCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCC
GTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGAT
TAGATGCCCGTGCAGCGGCTATTATCATGCGAACAGTGAGGAACATCGTGGACACAGGGCGAACCATTGTTTGCACGATCCATCAACCCAGTATCGATATCTTTGAAGCCTTCGATGAGTTATTTTTAATGAAGCGAGGGGGTCAGTTGATATACGCGGGGCCATTGGGTCGAAATTCCCACAAACTTGTGGAGTACCTG
TCGgtgagattccaaaatatactttcaaaattcattttgttaaagagtaacatagttttttaaatgtagaccacattgaattgaaaatagaatactttttatctgtgtatcagagaatttatagaacttgtgagattatatgaaggattgaaaaagattatatgatcgttgtttgatattgttgtaaaatagtatttggt
ttgcaaatgttaacttgatgaacaagtgttatgtgcagAAAGTTGAAGGAGTTCCCCCTATAAAAGACGGGTATAACCCGGCTACGTGGATGTTGGAAGTGACCTCCATGTCCGAGGAACGCCGTCTGGGGGTCGACTTTGCTGAGGTTTATCAGTCATCAGATTTGTATAAGTATGTACAGGGGTCGTTTCGTTTGATC
TACTTCTATTACACTTGAGAAGCTTTTACAGTCGGGTCACATCTTATTGATTCCAATTATTTGATTTTCTGTCACAGACGAAACATAGAACTGATAGACCATTTGAGCCAGCCAGCTCCAGACTCGAGCGATCTTGATTTCGCAACGAAATATTCTCAGCCTTCCCTGGAGCAGTTCAGGGCCTGCCTATGGAAGCAGCA
TTGGTCCTACTGGCGGAATCCTCACTACACTGCAGTGAGATTCTTCTTCACCACAATTATCTCGCTGATGTTCGGTACTATCTGTTGGAAATTTGGAACCAAGAGGAGTAAACAGCAGGACGTCCTAAACGCTATGGGATCATTGTATGCTGCCGTTCTCTTCCTGGGAGTAACCAATTCGTCTTCCGTGCAACCCGTTA
TTTCGGTGGAAAGAATGGTCGTCTACCGTGAAAAGGCTGCTGGAATGTATTCAGCTCTTCCATACGCTTTTGCTCAGGTGGTAATCGAGCTTCCATATGTACTGGTCCAAACCATCATCTACAGTTCGATCTTTTACTCCATGGCCGCCTTTGAGTGGACGGCAGTCAAATTCCTCTGGTATTTCTACTTCCTGTATTTC
ACACTCTTGTATTTCACGTTCTTCGGAATGATGAACGTGGCAATCACTCCAAATCACAACGTTGCTGCTATTGCTTCTGCTCCCTTCTTCATGCTGTGGAATCTCTTCTCAGGTTTTATGATTCCTCACCGGATGATTCCTGTGTGGTGGAGATGGTATTATTGGCTGAATCCTGTTGCCTGGTCACTGTATGGGCTTCT
GACTTCTCAATATGGTAATGTGGAGACGAGTTTAAAAATGACAAACGGGAAGCATCAGCCGGTGAAACATTTCCTCAGAGAGTATTTCGGATACCATGAAGAGTTTGTGGGAGTTGCAGGGGTTGCATTGCTGGGTTTCTGCCTTCTCTTTGGCTTCGTTTTCGCCCTCGGAATCAAGCATCTCAACTTTCAAAGGCGAT
AGACTCTGAATCTCTGCACTGTGGTATCCTTACCTGTAAATTAAGTCAAGATACTCATTGACAAAAGTACTAGAATGCCACAATAAAGCAGTAAGCTGTTTTGTTCCGGTACAAAAATAATTAAATTCATAAAATCTTCAACAATAACGCTGGTTCATCATCATAAATATAATAATCTTAATCATGATAATTTGTAATTA
AGTATTCTCAAAAAATGAAAAACAAATTTC
Intron 7 GTAATATTTT ... GCGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.08 | 26 | 6 | 11 |
| A2 | 56.66 | 4.5 | 6 | 4 |
| A3 | 14.75 | 24 | 5 | 4 |
| A4 | 40 | 9 | 1 | 6 |
| A5 | 30 | 5.5 | 1 | 2 |
| A6 | 35.89 | 18 | 6 | 10 |
| A7 | 55.94 | 19 | 5 | 24 |
| A8 | 57.49 | 23 | 7 | 31 |
| A9 | 46.62 | 18.5 | 1 | 16 |
| A10 | 29.77 | 35.5 | 2 | 15 |
>TRINITY_DN39167_c0_g1_i1 from sample A6 / Example spliced isoformGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAG
GTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGG
AGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAG
ATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAG
ATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
>TRINITY_DN39167_c0_g1_i14 from sample A6 / Example unspliced isoform:GTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAG
GTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGG
AGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGgtaatattttcaactaaaaattgacacgacatgaatttctat
attgtaaaacaaatgattaggaagagcaatttactgttcttctgtgtggatgcccaggtatatttggtggtggaggtagaggtataagtggaaatactgttatctcaacctccattcaatgcgtttgcagATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTC
GATTCAGATCTGCGAGTAAATTTTTTTAAAAATTTTAGTTTATTGTTTACTGTTTATTTACTGTTTGCATTTATTGTTTGAAGTTGAGTTGTTCTGTTAGAGTTATGGGGGTCTTTTGTTATTTGAAACCTCTCCAGAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGA
CTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
Intron 8 GCTTTAATGA ... TCCCGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.8 | 11.1 | 8.8 | 6 |
| A2 | 61.07 | 8.4 | 18.5 | 15.8 |
| A3 | 57.01 | 11.1 | 12.6 | 12.3 |
| A4 | 27.61 | 6.5 | 3.3 | 2.5 |
| A5 | 90.91 | 0 | 1.4 | 1.3 |
| A6 | 41.16 | 14.1 | 9.9 | 9.7 |
| A7 | 31.93 | 21 | 8.6 | 7.8 |
| A8 | 38.93 | 21.8 | 13.7 | 14.1 |
| A9 | 44.08 | 17.5 | 14.9 | 11.7 |
| A10 | 38.41 | 21.5 | 16.5 | 10.6 |
>TRINITY_DN108443_c0_g1_i4 from sample A2 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGA
GCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGA
AATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGACCCGCGAGTAATTTTTTAAAAAAAATTTAGTTTGTTGTTTACTGTTTATTTACTGTTTTCATTTATTTTTTGAAGTTGCGTTGT
CATG
>TRINITY_DN108443_c0_g1_i1 from sample A2 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAGGCAGGAAAACAGATTTGCAGAAATTTTTTCTTTTTTTTCAGTTTCTTTTTTTTTTCTTTTGTTTATGGTGCAGATGATGGAAATCGGTTCATTTTTCTTTCCACAGGTAGGCAAACAAATTTGTGAGCAATGTGA
GATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACCGAATCGAAAAAGTAAGTTGTTGAATAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGG
AGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCATTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGA
TGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGgctttaatgaggtggcttcttatcttcccgggcagGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTC
AACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTG
CAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAAC
Intron 9 GTGAGTGAAT ... ATTTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.43 | 5 | 13 | 12 |
| A2 | 64.9 | 16.5 | 26 | 35 |
| A3 | 80 | 5 | 21 | 19 |
| A4 | 68 | 4 | 10 | 7 |
| A5 | 72.12 | 3.5 | 12 | 6 |
| A6 | 52.48 | 24 | 22 | 31 |
| A7 | 74.19 | 24 | 82 | 56 |
| A8 | 55.56 | 22 | 31 | 24 |
| A9 | 72.41 | 12 | 36 | 27 |
| A10 | 59.55 | 18 | 29 | 24 |
>TRINITY_DN108443_c0_g1_i7 from sample A2 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTAGGCAAACAAA
TTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAAC
>TRINITY_DN108443_c0_g1_i2 from sample A2 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATgtgagtgaattaa
taaataccatctttagaacttgcgatggtgcagaggatggaagtgagttcattttattttcacagGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAA
CCGAATCGAAAAAGTAAGTTGTTGAATAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGGAGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCA
TTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGG
ACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTG
CGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTT
ATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAAC
Intron 10 GTGAGTGAAT ... AGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 4 | 0 | 5 |
| A2 | 42.86 | 16 | 2 | 12 |
| A3 | 40 | 3 | 1 | 2 |
| A4 | 42.86 | 4 | 0 | 3 |
| A5 | 57.14 | 3 | 4 | 4 |
| A6 | 44.19 | 24 | 0 | 19 |
| A7 | 51.22 | 20 | 0 | 21 |
| A8 | 23.08 | 20 | 0 | 6 |
| A9 | 47.83 | 12 | 3 | 11 |
| A10 | 41.94 | 18 | 0 | 13 |
>TRINITY_DN39468_c0_g2_i20 from sample A9 / Example spliced isoformCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCT
TCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCC
ATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATTTAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCA
GCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATGAAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTA
CGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATCTACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTAC
CTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAATCTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTT
CTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGAAGGGATAGTCACCCAGCAGCTCTGACAACCTCAAGGTACGGTG
TCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGACGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTC
ATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTTGGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGC
GCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTTCTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACT
GGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACT
GTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTCCCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAA
ACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGACCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAA
CAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCCGTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAA
GTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGATTAGATGCCCGTGCAGCGGCTATTATCATGCGAAC
>TRINITY_DN39468_c0_g2_i16 from sample A9 / Example unspliced isoform:GGGAGAGCATCCTAACAAATCCGTTGACCGGAAATATTCTGAGGGAGAGCATCCTAACAAATCCGCCAACTCTAGATACTGGAAAGCCATCATGGGAACGAATAAATGCATCCTTATCTCTCCGGGAAGCATGCCTTCAAACAATATGTGAAATgtgagtgaataaataccatcttagtttgcgatggtgcagaggatgg
aagtgagttcattttattttcacaggcaggaaaacagatttgcagGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAAC
GGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTG
GAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATTTAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTC
GGTACAAGATATGACATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATGAAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAG
AGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATCTACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACAT
TTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAATCTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATAT
GTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGAAGGGATAGTCACCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGT
TCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGACGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGA
GAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTTGGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTA
ATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTTCTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAA
GCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGA
GACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTCCCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGC
ATACCAGAAGACCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGAT
TTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCCGTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTAT
CGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGATTAGATGCCCGTGCAGCGGCTATTATCATGCGAAC
Intron 11 GCAGGAAAAC ... CTTTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 12 | 3 | 3 |
| A2 | 27.08 | 35 | 12 | 14 |
| A3 | 26.92 | 19 | 3 | 11 |
| A4 | 46.15 | 7 | 5 | 7 |
| A5 | 47.83 | 6 | 4 | 7 |
| A6 | 24.39 | 31 | 2 | 18 |
| A7 | 19.42 | 56 | 11 | 16 |
| A8 | 25 | 24 | 5 | 11 |
| A9 | 21.74 | 27 | 6 | 9 |
| A10 | 21.31 | 24 | 1 | 12 |
>TRINITY_DN108443_c0_g1_i2 from sample A2 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAGGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAA
CCGAATCGAAAAAGTAAGTTGTTGAATAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGGAGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCA
TTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGG
ACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTG
CGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTT
ATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAAC
>TRINITY_DN108443_c0_g1_i1 from sample A2 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAGgcaggaaaacagatttgcagaaattttttcttttttttcagtttcttttttttttcttttgtttatggtgcagatgatggaaatcggttcatttttctttccacagGTAGGCAAACAAATTTGTGAGCAATGTGA
GATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACCGAATCGAAAAAGTAAGTTGTTGAATAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGG
AGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCATTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGA
TGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTC
AACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTG
CAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAAC
Intron 12 GTAAGTTTAT ... TGTTCGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.19 | 62 | 33 | 11 |
| A2 | 25 | 27 | 11 | 7 |
| A3 | 22.45 | 57 | 21 | 12 |
| A4 | 29.9 | 34 | 23 | 6 |
| A5 | 33.33 | 19 | 18 | 1 |
| A6 | 27.27 | 12 | 8 | 1 |
| A7 | 22.11 | 37 | 12 | 9 |
| A8 | 33.33 | 4 | 4 | 0 |
| A9 | 24.39 | 31 | 14 | 6 |
| A10 | 20.79 | 40 | 14 | 7 |
>TRINITY_DN45213_c2_g2_i3 from sample A7 / Example spliced isoformGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGG
AGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGG
AACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATTTAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCCAGGAGAGAGAAG
CGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATGAAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATT
GCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATCTACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTG
TGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAATCTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTA
GGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGAAGGGATAGTCACCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCAC
CATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGACGGCGGAGGCCTTTACTTGGGCGCACTTTACTTCGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACAT
GGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTTGGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGG
TCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTTCTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCG
GGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGG
TTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTCCCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGGCCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCT
TTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAAC
AGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCCGTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTG
CCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGATTAGATGCCCGTGCAGCGGCTATTATCATGAGAACAG
>TRINITY_DN45213_c2_g2_i8 from sample A7 / Example unspliced isoform:TTTCCATCGATTTCACATTTTGATATTGAGAGAAAACAACGGATCGCTGTCTCATATTTATGGAGAGGACAGTGTGGGAGGTCATTTAATACAGCCGTTGGTTACAGCTGAGATATTCGGCATCCGTTGGCTGTGAGAGTAAGTGAAAAGACACTTACGAGTAAACCCAGAGGATTAGTTGGTAGAGAAATGCTGCTCAG
CTAACATAATAAATGGCATGCATTTTATCTTCACAGCTAGAAGTTGAACCAGTCCCACATGTGCTGTGCTGCTTACTTAGATTTATGATGAACAGAACCCTAATCTCTAAGAAGCTCTGCTTTGAATCCCATGAGTCTACAGGGAGAAATGCTGTGAAGTAGATTAGGTCTGACATTGTGTGGGCAAGGGTGATAATAGA
TCTTCTGTTATCATCAGCTTCAGAGAATGCAGGGCTCTGGAGAACTTAGGAGATCAGGGAGTATACGTCCTTCTTCATTGTGGGGATCTGGCACTAGTACCGGCCATGACATGATTAGTGTTTTTTCCAAAGCCTCGACGCGTCGAGGCGAGGAGGAAGAACAGGCGCTCACTTGGGCTGCCCTTGAGCGCCTCCCCACT
TACAATCGAGTTCGGAAGGGTATTATTCATAACGTTTTAGGAGAGCAATGTGAGATGGATATTGCCAATCTTAGCTTCCATGATCGCCAGCTCCTGCTCGACAGGCTCTTCAATATGGCGGACGATAATACTGAGCAGTTTTTGTTCAAGATGCGGGAACGAATCGACAAAGTTGGACTGAGCCTGCCGAGGATCGAAGT
GCGTTATCAACAGTTGAGCGTGGAGGCTGATGTCTATGTAGGAAGCAGAGCCTTACCCACCATACCTAACTATATATTCAATATGACAGAGGCTTTAATGAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCAATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTC
CGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATTTAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGC
TGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCCAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATGAAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGA
CGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGgtaagtttatgattgaattgtgaggttttgttaaatgatatggtgtaacatttaaactacttcctacttacatatctcaaatgacaggatgagagcagaattttacatccttacacacaattcactcaacatccttacaaacaattcact
ccaaaaattgaatgtatccgcttgttcagtcactcgtatgaaccaatacatctataccattaaatcctttcaagctcgataattattgttgtccataaagatctaacaggcactgacaatgaaggtgttcggcagGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATCTACGGGCTTAGACAGC
TCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAATCTCTCGGCTTTAGGTG
TCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGAAGGGATAGTCACCCAG
CAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGACGGCGGAGGCCTTTAC
TTGGGCGCACTTTACTTCGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTTGGGTATCCATGACCTA
TTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTTCTTTCTAGAGAAAGCA
TCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGCTCTGTTGGGTTAT
GCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTCCCATAAAAAAGGAAAA
GAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGGCCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAAACAACTT
TGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCCGTCTGAAGTTGATTCA
GAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGATTAGATGCCCGTGCAGC
GGCTATTATCATGAGAACAG
Intron 13 GTGAGTTCAT ... CTTTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.78 | 13 | 7 | 3 |
| A2 | 27.47 | 33 | 11 | 14 |
| A3 | 36 | 16 | 7 | 11 |
| A4 | 53.85 | 6 | 7 | 7 |
| A5 | 44.44 | 10 | 9 | 7 |
| A6 | 27.1 | 39 | 11 | 18 |
| A7 | 27.7 | 77 | 43 | 16 |
| A8 | 25.3 | 31 | 10 | 11 |
| A9 | 27.27 | 32 | 15 | 9 |
| A10 | 28.16 | 37 | 17 | 12 |
>TRINITY_DN108443_c0_g1_i4 from sample A2 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGA
GCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGA
AATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGACCCGCGAGTAATTTTTTAAAAAAAATTTAGTTTGTTGTTTACTGTTTATTTACTGTTTTCATTTATTTTTTGAAGTTGCGTTGT
CATG
>TRINITY_DN108443_c0_g1_i1 from sample A2 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAgtgagttcattttattttcacaggcaggaaaacagatttgcagaaattttttcttttttttcagtttcttttttttttcttttgtttatggtgcagatgatggaaatcggttcatttttctttccacagGTAGGCAAACAAATTTGTGAGCAATGTGA
GATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACCGAATCGAAAAAGTAAGTTGTTGAATAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGG
AGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCATTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGA
TGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTC
AACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTG
CAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAAC
Intron 14 GTAAGTACAA ... TTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.33 | 56 | 0 | 19 |
| A2 | 15.56 | 38 | 0 | 7 |
| A3 | 15.09 | 45 | 0 | 8 |
| A4 | 20.75 | 42 | 0 | 11 |
| A5 | 15.38 | 11 | 0 | 2 |
| A6 | 13.04 | 20 | 0 | 3 |
| A7 | 4.44 | 43 | 0 | 2 |
| A8 | 23.53 | 26 | 0 | 8 |
| A9 | 16.67 | 35 | 0 | 7 |
| A10 | 16.67 | 50 | 0 | 10 |
>TRINITY_DN39468_c0_g2_i6 from sample A9 / Example spliced isoformATTTAACAGAGTAAATCCAAGAATCCTCCATCATAATCAGAGAAAAAGGAATGAGGAGACTTTATCAAGGTGGTTGTTCTCATTAAAAGAAATTGGAAAAGTTGACCTACATCCTCTTCACCCAACAGTATATATGGCCTAACATTCTAAACTACGAGCATTTGGAAACATTGTTTCCATCGATTTCACATTTTGATATT
GAGAGAAAACAACGGATCGCTGTCTCATATTTATGGAGAGGACAGTGTGGGAGGTCATTTAATACAGCCGTTGGTTACAGCTGAGATATTCGGCATCCGTTGGCTGTGAGAGTAAGTGAAAAGACACTTACGAGTAAACCCAGAGGATTAGTTGGTAGAGAAATGCTGCTCAGCTAACATAATAAATGGCATGCATTTTA
TCTTCACAGCTAGAAGTTGAACCAGTCCCACATGTGCTGTGCTGCTTACTTAGATTTATGATGAACAGAACCCTAATCTCTAAGAAGCTCTGCTTTGAATCCCATGAGTCTACAGGGAGAAATGCTGTGAAGTAGATTAGGTCTGACATTGTGTGGGCAAGGGTGATAATAGATCTTCTGTTATCATCAGCTTCAGAGAA
TGCAGGGCTCTGGAGAACTTAGGAGATCAGGGAGTATACGTCCTTCTTCATTGTGGGGATCTGGCACTAGTACCGGCCATGACATGATTAGTGTTTTTTCCAAAGCCTCGACGCGTCGAGGCGAGGAGGAAGAACAGGCGCTCACTTGGGCTGCCCTTGAGCGCCTCCCCACTTACAATCGAGTTCGGAAGGGTATTATT
CATAACGTTTTAGGAGAGCAATGTGAGATGGATATTGCCAATCTTAGCTTCCATGATCGCCAGCTCCTGCTCGACAGGCTCTTCAATATGGCGGACGATAATACTGAGCAGTTTTTGTTCAAGATGCGGGAACGAATCGACAAAGTTGGACTGAGCCTGCCGAGGATCGAAGTGCGTTATCAACAGTTGAGCGTGGAGGC
TGATGTCTATGTAGGAAGCAGAGCCTTACCCACCATACCTAACTATATATTCAATATGACAGAGGCTTTAATGAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCAATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTAC
TCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATTTAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGAC
ATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATGAAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGG
CCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATCTACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATG
ACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAATCTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAA
TTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGAAGGGATAGTCACCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAAT
TGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGACGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTT
ACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTTGGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGT
AGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTTCTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGA
GACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGGGGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGA
CAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTCCCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGACCGA
CTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGA
ACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCCGTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCA
AACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGATTAGATGCCCGTGCAGCGGCTATTATCATGCGAAC
>TRINITY_DN39468_c0_g2_i5 from sample A9 / Example unspliced isoform:TGTGACTCTAGCTTGCCTTAACCgtaagtacaatggcgcaatctgcttgcactaggcttcgaaaggttttgaaagattacctctctaagacctgagattgatttcttgcagCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGT
TCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTCCCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGACCGACTGCAGTTGTTGAGAGATGTTAGTGG
GGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGAGCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATG
TAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCCGTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTT
GTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGATTAGATGCCCGTGCAGCGGCTATTATCATGCGAAC
Intron 15 GTAAATTTTT ... ACCTCTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 44.53 | 17 | 11 | 16 |
| A2 | 24.71 | 4.7 | 3 | 0 |
| A3 | 10.24 | 13.3 | 2 | 1 |
| A4 | 0 | 4.3 | 0 | 0 |
| A5 | 31.48 | 1.3 | 0 | 1 |
| A6 | 30.78 | 38.3 | 8 | 26 |
| A7 | 27.99 | 47.9 | 14 | 23 |
| A8 | 35.44 | 54.6 | 24.8 | 35 |
| A9 | 22.56 | 44.6 | 12 | 14 |
| A10 | 27.34 | 30.9 | 14 | 9 |
>TRINITY_DN39167_c0_g1_i3 from sample A6 / Example spliced isoformGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCA
ATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGC
AGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGG
TTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAG
TCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
>TRINITY_DN39167_c0_g1_i14 from sample A6 / Example unspliced isoform:GTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAG
GTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGG
AGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTAATATTTTCAACTAAAAATTGACACGACATGAATTTCTAT
ATTGTAAAACAAATGATTAGGAAGAGCAATTTACTGTTCTTCTGTGTGGATGCCCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTC
GATTCAGATCTGCGAgtaaatttttttaaaaattttagtttattgtttactgtttatttactgtttgcatttattgtttgaagttgagttgttctgttagagttatgggggtcttttgttatttgaaacctctccagAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGA
CTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTAAAAAA
Intron 16 GTATGTACAG ... TCTGTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.94 | 29 | 6 | 5 |
| A2 | 16.67 | 20 | 2 | 6 |
| A3 | 28.04 | 34 | 10 | 16.5 |
| A4 | 26.41 | 18 | 5 | 8 |
| A5 | 18.18 | 18 | 3 | 5 |
| A6 | 15.44 | 52 | 10.5 | 8.5 |
| A7 | 20 | 43 | 5 | 16.5 |
| A8 | 14.14 | 65 | 2 | 19.5 |
| A9 | 13.86 | 73 | 9 | 14.5 |
| A10 | 12.28 | 50 | 5 | 9 |
>TRINITY_DN114155_c1_g1_i5 from sample A3 / Example spliced isoformGTTGTTCTCATTAAAAGAAATTGGAAAAGTTGACCTACATCCTCTTCACCCAACAGTATATATGGCCTAACATTCTAAACTACGAGCATTTGGAAACATTGTTTCCATCGATTTCACATTTTGATATTGAGAGAAAACAACGGATCGCTGTCTCATATTTATGGAGAGGACAGTGTGGGAGGTCATTTAATACAGCCGTT
GGTTACAGCTGAGATATTCGGCATCCGTTGGCTGTGAGAGTAAGTGAAAAGACACTTACGAGTAAACCCAGAGGATTAGTTGGTAGAGAAATGCTGCTCAGCTAACATAATAAATGGCATGCATTTTATCTTCACAGCTAGAAGTTGAACCAGTCCCACATGTGCTGTGCTGCTTACTTAGATTTATGATGAACAGAACC
CTAATCTCTAAGAAGCTCTGCTTTGAATCCCATGAGTCTACAGGGAGAAATGCTGTGAAGTAGATTAGGTCTGACATTGTGTGGGCAAGGGTGATAATAGATCTTCTGTTATCATCAGCTTCAGAGAATGCAGGGCTCTGGAGAACTTAGGAGATCAGGGAGTATACGTCCTTCTTCATTGTGGGGATCTGGCACTAGTA
CCGGCCATGACATGATTAGTGTTTTTTCCAAAGCCTCGACGCGTCGAGGCGAGGAGGAAGAACAGGCGCTCACTTGGGCTGCCCTTGAGCGCCTCCCCACTTACAATCGAGTTCGGAAGGGTATTATTCATAACGTTTTAGGAGAGCAATGTGAGATGGATATTGCCAATCTTAGCTTCCATGATCGCCAGCTCCTGCTC
GACAGGCTCTTCAATATGGCGGACGATAATACTGAGCAGTTTTTGTTCAAGATGCGGGAACGAATCGACAAAGTTGGACTGAGCCTGCCGAGGATCGAAGTGCGTTATCAACAGTTGAGCGTGGAGGCTGATGTCTATGTAGGAAGCAGAGCCTTACCCACCATACCTAACTATATATTCAATATGACAGAGGCTTTAAT
GAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCAATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATT
TAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATG
AAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATC
TACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAAT
CTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGA
AGGGATAGTCATCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGA
CGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTT
GGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTT
CTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGG
GGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTC
CCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGGCCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGA
GCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCC
GTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGAT
TAGATGCCCGTGCAGCGGCTATTATCATGCGAACAGTGAGGAACATCGTGGACACAGGGCGAACCATTGTTTGCACGATCCATCAACCCAGTATCGATATCTTTGAAGCCTTCGATGAGTTATTTTTAATGAAGCGAGGGGGTCAGTTGATATACGCGGGGCCATTGGGTCGAAATTCCCACAAACTTGTGGAGTACCTG
TCGAAAGTTGAAGGAGTTCCCCCTATAAAAGACGGGTATAACCCGGCTACGTGGATGTTGGAAGTGACCTCCATGTCCGAGGAACGCCGTCTGGGGGTCGACTTTGCTGAGGTTTATCAGTCATCAGATTTGTATAAACGAAACATAGAACTGATAGACCATTTGAGCCAGCCAGCTCCAGACTCGAGCGATCTTGATTT
CGCAACGAAATATTCTCAGCCTTCCCTGGAGCAGTTCAGGGCCTGCCTATGGAAGCAGCATTGGTCCTACTGGCGGAATCCTCACTACACTGCAGTGAGATTCTTCTTCACCACAATTATCTCGCTGATGTTCGGTACTATCTGTTGGAAATTTGGAACCAAGAGGAGTAAACAGCAGGACGTCCTAAACGCTATGGGAT
CATTGTATGCTGCCGTTCTCTTCCTGGGAGTAACCAATTCGTCTTCCGTGCAACCCGTTATTTCGGTGGAAAGAATGGTCGTCTACCGTGAAAAGGCTGCTGGAATGTATTCAGCTCTTCCATACGCTTTTGCTCAGGTGGTAATCGAGCTTCCATATGTACTGGTCCAAACCATCATCTACAGTTCGATCTTTTACTCC
ATGGCCGCCTTTGAGTGGACGGCAGTCAAATTCCTCTGGTATTTCTACTTCCTGTATTTCACACTCTTGTATTTCACGTTCTTCGGAATGATGAACGTGGCAATCACTCCAAATCACAACGTTGCTGCTATTGCTTCTGCTCCCTTCTTCATGCTGTGGAATCTCTTCTCAGGTTTTATGATTCCTCACCGGATGATTCC
TGTGTGGTGGAGATGGTATTATTGGCTGAATCCTGTTGCCTGGTCACTGTATGGGCTTCTGACTTCTCAATATGGTAATGTGGAGACGAGTTTAAAAATGACAAACGGGAAGCATCAGCCGGTGAAACATTTCCTCAGAGAGTATTTCGGATACCATGAAGAGTTTGTGGGAGTTGCAGGGGTTGCATTGCTGGGTTTCT
GCCTTCTCTTTGGCTTCGTTTTCGCCCTCGGAATCAAGCATCTCAACTTTCAAAGGCGATAGACTCTGAATCTCTGCACTGTGGTATCCTTACCTGTAAATTAAGTCAAGATACTCATTGACAAAAGTACTAGAATGCCACAATAAAGCAGTAAGCTGTTTTGTTCCGGTACAAAAATAATTAAATTCATAAAATCTTCA
ACAATAACGCTGGTTCATCATCATAAATATAATAATCTTAATCATGATAATTTGTAATTAAGTATTCTCAAAAAATGAAAAACAAATTTC
>TRINITY_DN114155_c1_g1_i7 from sample A3 / Example unspliced isoform:GTTGTTCTCATTAAAAGAAATTGGAAAAGTTGACCTACATCCTCTTCACCCAACAGTATATATGGCCTAACATTCTAAACTACGAGCATTTGGAAACATTGTTTCCATCGATTTCACATTTTGATATTGAGAGAAAACAACGGATCGCTGTCTCATATTTATGGAGAGGACAGTGTGGGAGGTCATTTAATACAGCCGTT
GGTTACAGCTGAGATATTCGGCATCCGTTGGCTGTGAGAGTAAGTGAAAAGACACTTACGAGTAAACCCAGAGGATTAGTTGGTAGAGAAATGCTGCTCAGCTAACATAATAAATGGCATGCATTTTATCTTCACAGCTAGAAGTTGAACCAGTCCCACATGTGCTGTGCTGCTTACTTAGATTTATGATGAACAGAACC
CTAATCTCTAAGAAGCTCTGCTTTGAATCCCATGAGTCTACAGGGAGAAATGCTGTGAAGTAGATTAGGTCTGACATTGTGTGGGCAAGGGTGATAATAGATCTTCTGTTATCATCAGCTTCAGAGAATGCAGGGCTCTGGAGAACTTAGGAGATCAGGGAGTATACGTCCTTCTTCATTGTGGGGATCTGGCACTAGTA
CCGGCCATGACATGATTAGTGTTTTTTCCAAAGCCTCGACGCGTCGAGGCGAGGAGGAAGAACAGGCGCTCACTTGGGCTGCCCTTGAGCGCCTCCCCACTTACAATCGAGTTCGGAAGGGTATTATTCATAACGTTTTAGGAGAGCAATGTGAGATGGATATTGCCAATCTTAGCTTCCATGATCGCCAGCTCCTGCTC
GACAGGCTCTTCAATATGGCGGACGATAATACTGAGCAGTTTTTGTTCAAGATGCGGGAACGAATCGACAAAGTTGGACTGAGCCTGCCGAGGATCGAAGTGCGTTATCAACAGTTGAGCGTGGAGGCTGATGTCTATGTAGGAAGCAGAGCCTTACCCACCATACCTAACTATATATTCAATATGACAGAGGCTTTAAT
GAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCAATTCTGCACGACGTCAGTGGCATCATCAAACCCGGCAGATTGACTCTGCTCCTAGGTCCGCCTGGTTCTGGAAAAACAACTTTACTCTTAACTTTGGCCGGGAGACTCGATTCGGAACTGCGAAAATTGGGGAATGTGACGTACAATGGACATGATT
TAAAGGAGTTCGTGCCTCAGAGAACATCGGCTTATGTTAGCCAGCGGGATTTGCATATTGCAGAACTAACAGTGCGAGAAACTCTGGATTTCTCAGGCCGCTGCCAAGGAGTCGGTACAAGATATGACATGCTGGTAGAACTCTCTAGGAGAGAGAAGCGTGCCGGAATTATACCAGATGAGGATATTGACATATTTATG
AAGGCCGCAGCTCTAGGAGATGAAAAGGCTTATCGTATTGTTACGGATTACATTTTGAAGATACTGGGCCTGGATATCTGCGCTGATACGATGGTTGGAGACGAAATGCTGAGAGGAATCTCAGGAGGCCAAATGAAACGTTTAACCACTGGAGAATTGCTAGTGGGTCCTGCGAGGGTTCTGTTCATGGATGATATATC
TACGGGCTTAGACAGCTCCACAACTTTCCAGATTATTAGGTACCTTCGTCAATCCGTGCATGCGTTAGATGGCACCACGGTCATCTCACTCTTGCAGCCTGCTCCCGAAACATTTGAATTGTTTGATGACATTATTCTGCTATCCGAAGGTCAAATTGTGTATCAAGGACCTCGAGATGACGTGGTGAGGTTCTTTGAAT
CTCTCGGCTTTAGGTGTCCCGAGAGAAAAGGCGTAGCAGATTTCTTACAGGAAGTCACTTCTAGGAAGGACCAGCAACAATATTGGGCTCACCGTGACCAGCCATATCGATATGTTCCCATTAGCGAATTCGTTAAAGCTTTTCGCAGTTTTCATGTAGGTAGGAGACTTTCAGAGGAGTTGGCAGTTCCTTATGATAGA
AGGGATAGTCATCCAGCAGCTCTGACAACCTCAAGGTACGGTGTCGGCAAAGCCGAACTGTTAAAAGCAAGCTTTTGGAGAGAATGGCTTCTTATCAAGCGAAATGCATTTGTTCATGTTTTCAAAATTGTACAGCTCTGCTTCGTTGCGGTGTGCACCATGACGGTTTTCTTCCGTACAAAGATGCACCATACAGTGGA
CGGCGCAGGCCTTTACTTGGGCGCACTTTACTTTGGCATCCTCATCTGTATGTTTAATGGGTTTACTGAGACTGCCATGACCATAGCGAAACTTCCTGTTCTATATAAACAGAGAGATTTGCTCTTTTACCCCTCTTGGATATATGCTTTCCCAACATGGGTTTTTAGTATTCCAACTTCAGTAGTCGAATCTGGCATTT
GGGTATCCATGACCTATTATGTCATTGGTTTCGATCCAGATGCGCAAAGGTTTTTTCGTCAGTTTTTACTTGTTTTCTCCGTACACCAGATGGCCACTGGGCTTTTCAGATTAATTGCTTCCATTGGTAGAACCATGGTAATTGCCAACACGTTTGGGTCTTTCGCAATGTTGATCGTCATGTGCCTTGGTGGATATGTT
CTTTCTAGAGAAAGCATCAAAAGCTGGTGGATATGGGGCTACTGGATCTCTCCCTTAATGTATGCTCAGAATGCCGTGAGCGTGAATGAGTTTTTGGGGCATTCGTGGAGTAAGCGTGTCCATAACGAGACTATGGGTGAACTATTGCTCAAATCTCGGGGTTTATTTCCATATGCGTACTGGTACTGGATTGGTGTTGG
GGCTCTGTTGGGTTATGCAGTCTTATTCAACATTTTGTATACTGTGACTCTAGCTTGCCTTAACCCAATCGGGAAACCTCACGCAATGGTCTCAGAAGCAGTTCTCCGGGAGAGACATACAAATAGGACAGGAGAGACCTATATAGAGCTAAGTTCGGTTTCTCTAACAGGAGCTACTAACTCTGCTGCAACTGAAGTTC
CCATAAAAAAGGAAAAGAAGAGAGGCATGGTTCTTCCGTTTAAACCGTTTAGCATTTGCTTCAAACATATCAACTATTACGTGGACATGCCTCTGGAAGTGAAGCAAGAAGGCATACCAGAAGGCCGACTGCAGTTGTTGAGAGATGTTAGTGGGGCTTTCAGACCTGGTGTCCTCACGGCCTTGGTTGGAGTTAGCGGA
GCTGGTAAAACAACTTTGATGGACGTATTGGCAGGGAGGAAAACAGGGGGCTACATAGAGGGCACCATTAGTATATCTGGTTATCCAAAGAAGCAAGAAACATTTGCTAGGATTTCAGGCTACTGCGAACAAAACGACATTCATTCACCTTATGTAACAGTTTATGAATCCCTTGTTTATTCCGGATGGCTGCGTCTGCC
GTCTGAAGTTGATTCAGAAACCAGGAAGATGTTTGTAGACGAAGTGATGGAGCTTGTAGAACTGACTTCTTTGAGAGGCTCTCTGGTGGGGCTTCCTGGAGTGAATGGCCTATCGACGGAGCAGCGCAAACGGTTGACTATAGCCGTAGAGCTTGTTGCCAATCCTTCCATTATATTCATGGATGAACCGACTTCAGGAT
TAGATGCCCGTGCAGCGGCTATTATCATGCGAACAGTGAGGAACATCGTGGACACAGGGCGAACCATTGTTTGCACGATCCATCAACCCAGTATCGATATCTTTGAAGCCTTCGATGAGTTATTTTTAATGAAGCGAGGGGGTCAGTTGATATACGCGGGGCCATTGGGTCGAAATTCCCACAAACTTGTGGAGTACCTG
TCGGTGAGATTCCAAAATATACTTTCAAAATTCATTTTGTTAAAGAGTAACATAGTTTTTTAAATGTAGACCACATTGAATTGAAAATAGAATACTTTTTATCTGTGTATCAGAGAATTTATAGAACTTGTGAGATTATATGAAGGATTGAAAAAGATTATATGATCGTTGTTTGATATTGTTGTAAAATAGTATTTGGT
TTGCAAATGTTAACTTGATGAACAAGTGTTATGTGCAGAAAGTTGAAGGAGTTCCCCCTATAAAAGACGGGTATAACCCGGCTACGTGGATGTTGGAAGTGACCTCCATGTCCGAGGAACGCCGTCTGGGGGTCGACTTTGCTGAGGTTTATCAGTCATCAGATTTGTATAAgtatgtacaggggtcgtttcgtttgatc
tacttctattacacttgagaagcttttacagtcgggtcacatcttattgattccaattatttgattttctgtcacagACGAAACATAGAACTGATAGACCATTTGAGCCAGCCAGCTCCAGACTCGAGCGATCTTGATTTCGCAACGAAATATTCTCAGCCTTCCCTGGAGCAGTTCAGGGCCTGCCTATGGAAGCAGCA
TTGGTCCTACTGGCGGAATCCTCACTACACTGCAGTGAGATTCTTCTTCACCACAATTATCTCGCTGATGTTCGGTACTATCTGTTGGAAATTTGGAACCAAGAGGAGTAAACAGCAGGACGTCCTAAACGCTATGGGATCATTGTATGCTGCCGTTCTCTTCCTGGGAGTAACCAATTCGTCTTCCGTGCAACCCGTTA
TTTCGGTGGAAAGAATGGTCGTCTACCGTGAAAAGGCTGCTGGAATGTATTCAGCTCTTCCATACGCTTTTGCTCAGGTGGTAATCGAGCTTCCATATGTACTGGTCCAAACCATCATCTACAGTTCGATCTTTTACTCCATGGCCGCCTTTGAGTGGACGGCAGTCAAATTCCTCTGGTATTTCTACTTCCTGTATTTC
ACACTCTTGTATTTCACGTTCTTCGGAATGATGAACGTGGCAATCACTCCAAATCACAACGTTGCTGCTATTGCTTCTGCTCCCTTCTTCATGCTGTGGAATCTCTTCTCAGGTTTTATGATTCCTCACCGGATGATTCCTGTGTGGTGGAGATGGTATTATTGGCTGAATCCTGTTGCCTGGTCACTGTATGGGCTTCT
GACTTCTCAATATGGTAATGTGGAGACGAGTTTAAAAATGACAAACGGGAAGCATCAGCCGGTGAAACATTTCCTCAGAGAGTATTTCGGATACCATGAAGAGTTTGTGGGAGTTGCAGGGGTTGCATTGCTGGGTTTCTGCCTTCTCTTTGGCTTCGTTTTCGCCCTCGGAATCAAGCATCTCAACTTTCAAAGGCGAT
AGACTCTGAATCTCTGCACTGTGGTATCCTTACCTGTAAATTAAGTCAAGATACTCATTGACAAAAGTACTAGAATGCCACAATAAAGCAGTAAGCTGTTTTGTTCCGGTACAAAAATAATTAAATTCATAAAATCTTCAACAATAACGCTGGTTCATCATCATAAATATAATAATCTTAATCATGATAATTTGTAATTA
AGTATTCTCAAAAAATGAAAAACAAATTTC
Intron 17 GTAATATTTT ... GGATGCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.67 | 7 | 6 | 4 |
| A2 | 55 | 1 | 2.8 | 0 |
| A3 | 22.67 | 6 | 2.6 | 1 |
| A4 | 33.33 | 1 | 1 | 0 |
| A5 | 100 | 0 | 0.2 | 2 |
| A6 | 31.21 | 13 | 6.8 | 5 |
| A7 | 30.06 | 25 | 10.6 | 11 |
| A8 | 33.82 | 27 | 8.6 | 19 |
| A9 | 26.16 | 11 | 1.8 | 6 |
| A10 | 27.07 | 15 | 5.2 | 6 |
>TRINITY_DN132165_c1_g2_i4 from sample A1 / Example spliced isoformCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTGAGTTCATTTTATTTTCACAGGTAGGCAAACAAATTTGTGAG
CAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAA
GCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCT
GGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGG
AGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAACAGAACAGAAACACAATCCCGGGATTTCATTTCAAATATGTATTTGCATTAAAG
TCCTAAATAC
>TRINITY_DN132165_c1_g2_i9 from sample A1 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAA
TAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATGGAAGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAAGTGGAACGGA
GCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGgtaatattttcaactaaaaattgacacgacatgaa
tttctatattgtaaaacaaatgattaggaagagcaatttactgttcttctgtgtggatgcccagGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGG
GAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTGCAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACT
TCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAACAGAACAGAAACACAATCCCGGGATTTCATTTCAAATATGTATTTGCATTAAAGTCCTAAATAC
Intron 18 GTAAACTTTT ... ACCTCTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.66 | 2 | 5.2 | 14 |
| A2 | 70 | 0 | 0.7 | 0 |
| A3 | 0 | 1 | 0 | 0 |
| A4 | 0 | 2 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 30.34 | 20.9 | 11.9 | 6.3 |
| A7 | 14.68 | 24.5 | 1.2 | 7.3 |
| A8 | 41.3 | 27.4 | 12.7 | 25.8 |
| A9 | 15.97 | 18.9 | 1.6 | 5.6 |
| A10 | 22.26 | 28 | 7.8 | 8.3 |
>TRINITY_DN40918_c1_g1_i10 from sample A8 / Example spliced isoformCAGAGCAGTGTTATGTTCTTGTAGATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTGAGTGAATTAATAAATACCATCTTTAGAACTTGCGATGGTGCAGAGGATG
GAAGTAGGCAAACAAATTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACGAATCGAAAAAGTAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATA
TATGCTGATTTTCAGAGGGAGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCATTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAAC
AGCTGAGCGTGGAGGTTGATGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGTATATACTGCTGATATTTTATGAATCTCAGCCTCCAATGTTGTGATCTTTTTCTTAAATTATCATAACAGTCCATGTATTAACAATGAATTAGCAATGGTGATGGCAATATTTATCAA
TTAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTTTGCACGACGTCGGTGGCATCATCAAACCTGGCAGATTGAGTCTTCTCCTAGGCCTGCCTGGTTCTGGGAAAACAACTTTACTCTCAACTTTGGCCGGGACTCGGGAGACTCATTCAGATCTGCGAAAATTGGGGAAGGTGA
CGTACAATGGACACGATTTAAAGGGATTCGTGCCTTCAGAGAACATCGACTTATGTTAATATCCAACAGGATTTGTATTGCGGAACTAACAGTGAGAGAAACTTTGGACTTCTCAGGGCGCTTCCAAGGTGTCTGTAAAATGAACTTTCAGCTTTAATGAGATTACTCCATGTTTTACTCAGAGGAAGCTAATTCATGAT
AGTTACAAATCGCATAACCTTCACCATCATCTCTTAACAAAAGATGTTTTAATTTTCTTTACATGTCTATTATAGTGAAACTTGCAAAACCATGACATCTTATTCTCCAATCAGAGTGCTCAGCTGGAAGCGTATTATTATACATATGACGTTCACATAAACGGTTCAGAACCTCAC
>TRINITY_DN40918_c1_g1_i18 from sample A8 / Example unspliced isoform:AAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTCAACCTCCATTCAATGCGTTTGCAGATTGAGTCTTCTCCTAGGCCTGCCTGGTTCTGGGAAAACAACTTTACTCTCAACTTTGGCCGGGACTCGGGAGA
CTCATTCAGATCTGCGAgtaaactttttttaaaattttagtttgttgtttactgtttatatactgtttgcatttattttttgaagttgagttgtcatgttagagttatgtagttcttatgttatttgaaacctctccagAAATTGGGGAAGGTGACGTACAATGGACACGATTTAAAGGGATTCGTGCCTTCAGAGAACA
TCGACTTATGTTAATATCCAACAGGATTTGTATTGCGGAACTAACAGTGAGAGAAACTTTGGACTTCTCAGGGCGCTTCCAAGG
Intron 19 GTGAGTGAAT ... CTTTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.31 | 4.7 | 10 | 3 |
| A2 | 48.43 | 16.3 | 16.7 | 14 |
| A3 | 76.57 | 4.3 | 17 | 11 |
| A4 | 69.23 | 4 | 11 | 7 |
| A5 | 73.79 | 3.3 | 11.7 | 7 |
| A6 | 42.17 | 24 | 17 | 18 |
| A7 | 62.7 | 22.7 | 60 | 16 |
| A8 | 44.38 | 21.3 | 23 | 11 |
| A9 | 58.62 | 12 | 25 | 9 |
| A10 | 50.68 | 18 | 25 | 12 |
>TRINITY_DN108443_c0_g1_i7 from sample A2 / Example spliced isoformATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATGTAGGCAAACAAA
TTTGTGAGCAATGTGAGATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAAC
>TRINITY_DN108443_c0_g1_i1 from sample A2 / Example unspliced isoform:ATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTCTTCGGGCCGAGGTACCAGAGCAGTGTTATGTTCTTGTATATGTGTGAGCAAGAATGGTATTTATTCTGAGGGAAGCATGCCTTCAAACAATATGTGAAATgtgagtgaattaa
taaataccatctttagaacttgcgatggtgcagaggatggaagtgagttcattttattttcacaggcaggaaaacagatttgcagaaattttttcttttttttcagtttcttttttttttcttttgtttatggtgcagatgatggaaatcggttcatttttctttccacagGTAGGCAAACAAATTTGTGAGCAATGTGA
GATGGGTATCACCAATCTTAGCTTCCATAATCGCCAGCTCCTACTCGTCAGGCTCTTCAACATGGCGGACGATAATACTGAGTAGTTTTATGTTCAAGATGCGGAACCGAATCGAAAAAGTAAGTTGTTGAATAGATTCAGTTTAAAGGGTCATTTTAATTAATTGTCTCATTGGTTTATATATGCTGATTTTCAGAGGG
AGAAACACAAATATAGAGAAGATTTTTCAGCTTTCTTTCTTGGATTTTTCCTCTTAGATTAATTTTGATCGATTAAGTTGGATTTGTTTTTATCAACGTCAATTCATTATTGGTTGAAAATTCTTGAAATTTGAATCCAGAGTGGAACGGAGCCTTCCGAGGATGGAAATGTGTTATCAACAGCTGAGCGTGGAGGTTGA
TGTCTATGTAGAAAGCAGAGCCTTACCCATCATACCTAAACTATATATTCAATATGGCAGAGGCTTTAATGAGGTGGCTTCTTATCTTCCCGGGCAGGAAGAGAGGACTTTCCATTCTGCACGACGTCAGTGGCATCATCAAACCTGGCAGGTATATTTGGTGGTGGAGGTAGAGGTATAAGTGGAAATACTGTTATCTC
AACCTCCATTCAATGCGTTTGCAGATTGACTCTTCTCCTAGGCCCGCCTGGTTCTGGGAAAACAACTTTACTCTCAATTTTGGCCGGGAGACTCGATTCAGATCTGCGAAAATTGGCGAAGGTGCGTACAATGGATCCGATTTAAAGGGATTCGTGCCTCAGAGAACATCGACTTATGTTATCCAACAGGATTTGTATTG
CAGAACTAACAGTGACAGGAACTTTGGACTTCTCAGGGCGCTTCCAAGGAGTCTGTAAAATGAGCTTCCAGCTTTAATGAGATTACTTCATGTAAAATGAGATTTTATCTTTAATGAGATTACTTCATGTTTTACTCGGAGGAAGCTAATTAATGGTAAGTTACAGATCGCATAACCTTCACCATCATCTCTTAAC