sp|Q9FY61|TR120_ARATH ----> Trafficking protein particle complex II-specific subunit 120 homolog
Intron 1 GTTATAGGGT ... CGACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90.12 | 2 | 29 | 7.5 |
| A2 | 88.24 | 1 | 4 | 11 |
| A3 | 77.78 | 4 | 14 | 14 |
| A4 | 80.95 | 2 | 13 | 4 |
| A5 | 75 | 3 | 15 | 3 |
| A6 | 100 | 0 | 2 | 1 |
| A7 | 71.43 | 1 | 5 | 0 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 100 | 0 | 0 | 3 |
| A10 | 100 | 0 | 3 | 2 |
>TRINITY_DN110287_c0_g1_i8 from sample A3 / Example spliced isoformCGGAAGAGTTCTGGGAGGGTTCTCATGGCAAACAGCAGCAGGGAGTGAGCCTTACACGCAAGATAATAGCCATAAACGACTAGATCTTTCACCAGGCTCGATCTAAAACATTCATATATAGGCTGGAGGAAGATGACAAAAAGCGGCAACATTTAATTATGTTCCCACCTGCAGATTGGAAAACTTTGGAATTTCACATG
CAGAATCTGCTGGCACCATTCTTAAGACTCCATTGGATTCTCAAGCTAGTCTAAGCTCGGAAGAGGTGATCAAAGCAAAGAAACGGAGGCTTGGACGGGCACAAAAGACAATTGGGGACTATTGTCTTTTGGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGAC
CAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCTTTAGTGATAGATAGGATGGGGCAGAAGGATCAAATGTTGGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGAAGGGTATCAACCATCAGCTTTGAACTCGAAGCCACTTTGAAACTGGCTCGTTTTCTCTGCAGAAGGGAGAT
TGCTAAGGAAGTAGTAGAATTACTGATGGGTGCTGCTGATGGTGCAAAAGCTCTCATAGATGCTAGTGATCGTTTGGTGTTGAATGTGGAAATTGCTCGTCTGTTTGGTGCTCTGGGCTATGACCGAAAGGCTGCTTTTTTTTCCAGGCAAGTGGCTCAGCTATATTTGCAGCAGGACAATTGTTGGGCTGCTATCAGTG
CATTGCAAGTCTTGGCGATGACATCTAAATCTTATCGTGTTCAAAGTAAAGCGGCCACCAATAAGTCCCATTATTCTTCAAATGAAGTCCAATCAGCTTGTAGTGATGGGGGCAGATTGCAAACCCAATCAATAGCTGCATTGTTTGAAAGTCAGTGGAGCACACTGCAAATGGTTGTGCTGAAAGAAATATTGTTGTCT
GCTGTACGTGCTGGTGATCCTTTTGCTGCATGGAGTGCAGCAGCTCGACTGTTGAGATTGCACTATCCACTTATACCACCTGCTGGTCAGAGTGGCCTTGCTAATGCACTGACAACTTCAGCTGAAAGGCTTCCTTCAGGAACACGGTGTGCAGATCCTGCTCTGCCTTTCATAAGGTTGTATTCAATCCCCTCACTTCC
TTCACAGATGGAGATTGTAAAGCGTGTTCCTGGAAAGGAAGACTGGTGGGCAGGATCTGCTCCCTCCGGTCCATTTATTTACACACCTTTTGGCAAAGGAGATGCTAGTGATGACAAGAAGCATGAAATTATCTGGATAGTTGGGGAACCTGTTCAAGTATTAGTAGAGCTAGCAAACCCGTGTACCTTTGAGTTGTCAG
TTGAAAGCATATATCTTTCTGTTAATTCTGAGATTTTTGAGGCATTTCCCACGAGTGTGACTCTTCTACCCAATACATCCCAGATAATATCATTGTCTGGGATTCCCACCTCTGTTGGCCCATTGATAGTTGAAGGATGTATTGTTCATTGGTTTGGTGTAATAACTGAGCACCTTTTTAGAGATGTTGATGATCTTTTA
CTTGGAGCAGCACAAGGTCTTGTCTTGGTTGATCCTTTTCGAAGTTCTGGATTGCCCAAGTTAAGAAATGTTCCCAATCCAAATATATCGGTGGTGCCATCATTACCACTCTTGATTCCTAATGTGGTTGGAGGAGATGGATCAACAGTCTTATATGAAGGGGAAATCCGGGATATCCAGATAAGTCTTGCAAATGCTGG
CTCTGTTCCTGTGGTGGAGGCAAATGTTTCACTTTCTGGGAAGCAACAGGAAAATGTAATTTCTATTGGGCATGAAATGTTACAGTCAGCTCTTCCTCTGCAGCCTGGTGCATCAGTGGTTATCCCTGTCAGGCTACAAGCTGGGCAACTGAATTTGGAACTAGAAAATGTTAGTAATAGAAATGGTCCTGGGAATGTTG
GAAGGATATTCAAGGAGGGAAACAGTCCTTCATTGGTGATTCATTATGCAGGAACGTTGGCACAACTAGGAGATGACATACAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGTCCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAG
ATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGATAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGTTCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAG
AGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATTATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTTTTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAG
AGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGGAACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTATGGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCT
TCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCCTGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCGTTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGT
AGCTGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTACCTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACTCTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAAC
TGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGTACACTATGATGTGTGTTTATCAAGTGTAATGAGGTGGAGAATTGCAAATGCATGTTTTCTACCACCACTTATTTTCCTATTTCTCATTTTGGCAAGACGATAGGCTTGATTGTTTTCCACTTAGGTTATTCTTCCAACT
GAGCTCCTTTTTTCAGGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAGTGTATGTCCATTGCA
>TRINITY_DN110287_c0_g1_i7 from sample A3 / Example unspliced isoform:CGGAAGAGTTCTGGGAGGGTTCTCATGGCAAACAGCAGCAGGGAGTGAGCCTTACACGCAAGATAATAGCCATAAACGACTAGATCTTTCACCAGGCTCGATCTAAAACATTCATATATAGGgttatagggttagggtttttttggtgtatgattttgcgacaatggagccagatgtaagcatagaggggggttgcacga
ttcgcattgtagtgcttcccgtgggtcacattccgggtagtcacatgagggattatgtgtccatcgttgtacggcacaccaaggtcgatctctcaagtataagttctttctacaccgagcaccaaaagagtccctttgctcaccagccatgggatacggggagcctgaggttcaagttcctagtgggaggagctcagcag
agcccctgggaggattttcaagctcaccggaagattctcggagttataggattgtgccactgcccatcgtcgccggatttggggatcgttcacgatcagtttatgacgatttgcaaagcttatccggctgctttgattgcgagatgctttgcattctatcccagcgacttgcagCTGGAGGAAGATGACAAAAAGCGGCA
ACATTTAATTATGTTCCCACCTGCAGATTGGAAAACTTTGGAATTTCACATGCAGACATTGATGCAGGATCTCGCAGCTTCTTTATTGATGGATTTTGAAAAATGGGTCCTGCATGCAGAATCTGCTGGCACCATTCTTAAGACTCCATTGGATTCTCAAGCTAGTCTAAGCTCGGAAGAGGTGATCAAAGCAAAGAAAC
GGAGGCTTGGACGGGCACAAAAGACAATTGGGGACTATTGTCTTTTGGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGACCAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCTTTAGTGGTATGTTGATTTTGCAAACGTATGCCTATTGATAGC
TGTGGGTGTTGTTAAATACAAATTTACAAATGGGGCAATGATTCTTATGCAGATATCTTTCAGGGATTCATTCATTTCTTTCTGTTTCTACATTATTTGTTAGGTTTAAAATAATTCTTGTTATTTCTTGGTTGGGACTCTTAAATTGTATTTGCGTATTTGTGCATGCGTGCTTGGTATCTCTAAACTGTGAATATTGA
TTTCCTTTTGTCCCATCTGCTTCTCATAATAAAATTAGCCAATTATATAGTGGCATTTATGAGGGAATGCTATGTTTCTGAATGTGAATCTCAACTTGGAAACCTTTTCACGTGTCTAGATAGATAGGATGGGGCAGAAGGATCAAATGTTGGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGA
AGGTGAGTTGGTGGTCACCAAGAGACATAAATATATTTTGATTTTTTTTGACTTGGTTGGCTGG
Intron 2 GTACACTATG ... CTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 4 | 4 | 12 |
| A2 | 52.94 | 4 | 1 | 8 |
| A3 | 63.64 | 4 | 6 | 8 |
| A4 | 69.23 | 2 | 6 | 3 |
| A5 | 100 | 0 | 1 | 2 |
| A6 | 76 | 3 | 7 | 12 |
| A7 | 72.73 | 6 | 21 | 11 |
| A8 | 59.38 | 13 | 22 | 16 |
| A9 | 66.67 | 8 | 17 | 15 |
| A10 | 75 | 3 | 8 | 10 |
>TRINITY_DN112213_c0_g1_i4 from sample A1 / Example spliced isoformAAACGGAGGCTTGGACGGGCACAAAAGACAATTGGGGACTATTGTCTTTTGGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGACCAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCGTTAGTGATAGATAGGATGGGGCAGAAGGATCAAATGTT
GGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGAAGGGTATCAACCATCAGCTTTGAACTCGAAGCCACTTTGAAACTGGCTCGTTTTCTCTGCAGAAGGGAGATTGCTAAGGAAGTAGTAGAATTACTGATGGGTGCTGCTGATGGTGCAAAAGCTCTCATAGATGCTAGTGATCGTTTGGTGT
TGAATGTGGAAATTGCTCGTCTGTTTGGTGCTCTGGGCTATGAGCGAAAGGCTGCTTTTTTTTCCAGGCAAGTGGCTCAGCTATATTTGCAGCAGGACAATTGTTGGGCTGCTATCAGTGCATTGCAAGTCTTGGCGATGACATCTAAATCTTATCGTGTTCAAAGTAAAGCGGCCACCAATAAGTCCCATTATTCTTCA
AATGAAGTCCAATCAGCTTGTAGTGATGGGGGCAGATTGCAAACCCAATCAATAGCTGCATTGTTTGAAAGTCAGTGGAGCACACTGCAAATGGTTGTGCTGAAAGAAATATTGTTGTCTGCTGTACGTGCTGGTGATCCTTTTGCTGCATGGAGTGCAGCAGCTCGACTGTTGAGATTGCACTATCCACTTATACCACC
TGCTGGTCAGAGTGGCCTTGCTAATGCACTGACAACTTCAGCTGAAAGGCTTCCTTCAGGAACACGGTGTGCAGATCCTGCTCTGCCTTTCATAAGGTTGTATTCAATCCCCTCACTTCCTTCACAGATGGAGATTGTAAAGCGTGTTCCTGGAAAGGAAGACTGGTGGGCAGGATCTGCTCCCTCCGGTCCATTTATTT
ACACACCTTTTGGCAAAGGAGATGCTAGTGATGACAAGAAGCATGAAATTATCTGGATAGTTGGGGAACCTGTTCAAGTATTAGTAGAGCTAGCAAACCCGTGTACCTTTGAGTTGTCAGTTGAAAGCATATATCTTTCTGTTAATTCTGAGATTTTTGAGGCATTTCCCACGAGTGTGACTCTTCTACCCAATACATCC
CAGATAATATCATTGTCTGGGATTCCCACCTCTGTTGGCCCATTGATAGTTGAAGGATGTATTGTTCATTGTTTTGGTGTAATAACTGAGCACCTTTTTAGAGATGTTGATGATCTTTTACTTGGAGCAGCACAAGGTCTTGTCTTGGTTGATCCTTTTCGAAGTTCTGGATTGCCCAAGTTAAGAAATGTTCCCAATCC
AAATATATCGGTGGTGCCATCATTACCACTCTTGATTCCTAATGTGGTTGGAGGAGATGGATCAACAGTCTTATATGAAGGGGAAATCCGGGATATCCAGATAAGTCTTGCAAATGCTGGCTCTGTTCCTGTGGTGGAGGCAAATGTTTCACTTTCTGGGAAGCAACAGGAAAATGTAATTTCTATTGGGCATGAAATGT
TACAGTCAGCTCTTCCTCTGCAGCCTGGTGCATCAGTGGTTATCCCTGTCAGGCTACAAGCTGGGCAACTGAATTTGGAACTAGAAAATGTTAGTAATAGAAATGGTCCTGGGAATGTTGGAAGGATATTCAAGGAGGGAAACAGTCCTTCATTGGTGATTCATTATGCAGGAACGTTGGCACAACTAGGAGATGACATA
CAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGTCCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAGATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGA
TAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGTTCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAGAGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATT
ATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTTTTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAGAGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGG
AACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTATGGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCTTCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCC
TGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCGTTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGTAGCTGGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTAC
CTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACTCTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAACTGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGCAGAATTTTTGTTACCATG
ATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAGTGTATGACCATTGCATCTGCTCCCAAGTGACTCCTTAGTCAAGTATGGCTCTGACAAATTATCGCTTGCATCTAAATTCTCTGAAATAAGTATGG
AAGTGTGCCACTTATTTCAATTTCAAGTGTATTGCAACATGAAATGATTGCTATCTCTCATTCTCAGGCTTGAACAGGCATATGTACTGTCAACAGCATTTGTTACCATATGTACTGTCAGCAGCATTTGTTACCAATTCATGACAGTGGCTATCTTCAAGAAGCTGGTAAATGTTATAACAGGGTGGAATCTGCATTAA
CATTGCAACTTATTCTGAGCAGAATATCTGTTGCGATGGATCACTTCATTTTTACACTAGTAGCCTATTTTTGATATTAGGTTTGAGTTGTAGGAAATACAAGTACCTGGAAATAGTACTGAACTGATTCCAGATATTACTAAAACCAGCCAAGCTGGTGTAATGATGATAAATATTATACTCAAAGTCCATTTGTGATC
ATCCAGCATGTTCAGACAATCAAAGTTCATCTGGATAACTATCATTCAGTATCAAGCACCATGGAGTTTGCTTTGCCAAAAAGCTGTTTTGGCAATTTGATTATTTTACAAGGACTTGAGCTTCTAGTATTTTTGGAATGTCCATTTTATTGGCTTTAGGAAGAAATATGGCCCGAATGCTATCTGAAACTCTTGGAGTG
TATATGCTAAGTTCCATGTCTGCGAAATTGTTTCTGGCAC
>TRINITY_DN112213_c0_g1_i6 from sample A1 / Example unspliced isoform:AAACGGAGGCTTGGACGGGCACAAAAGACAATTGGGGACTATTGTCTTTTGGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGACCAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCGTTAGTGATAGATAGGATGGGGCAGAAGGATCAAATGTT
GGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGAAGGGTATCAACCATCAGCTTTGAACTCGAAGCCACTTTGAAACTGGCTCGTTTTCTCTGCAGAAGGGAGATTGCTAAGGAAGTAGTAGAATTACTGATGGGTGCTGCTGATGGTGCAAAAGCTCTCATAGATGCTAGTGATCGTTTGGTGT
TGAATGTGGAAATTGCTCGTCTGTTTGGTGCTCTGGGCTATGAGCGAAAGGCTGCTTTTTTTTCCAGGCAAGTGGCTCAGCTATATTTGCAGCAGGACAATTGTTGGGCTGCTATCAGTGCATTGCAAGTCTTGGCGATGACATCTAAATCTTATCGTGTTCAAAGTAAAGCGGCCACCAATAAGTCCCATTATTCTTCA
AATGAAGTCCAATCAGCTTGTAGTGATGGGGGCAGATTGCAAACCCAATCAATAGCTGCATTGTTTGAAAGTCAGTGGAGCACACTGCAAATGGTTGTGCTGAAAGAAATATTGTTGTCTGCTGTACGTGCTGGTGATCCTTTTGCTGCATGGAGTGCAGCAGCTCGACTGTTGAGATTGCACTATCCACTTATACCACC
TGCTGGTCAGAGTGGCCTTGCTAATGCACTGACAACTTCAGCTGAAAGGCTTCCTTCAGGAACACGGTGTGCAGATCCTGCTCTGCCTTTCATAAGGTTGTATTCAATCCCCTCACTTCCTTCACAGATGGAGATTGTAAAGCGTGTTCCTGGAAAGGAAGACTGGTGGGCAGGATCTGCTCCCTCCGGTCCATTTATTT
ACACACCTTTTGGCAAAGGAGATGCTAGTGATGACAAGAAGCATGAAATTATCTGGATAGTTGGGGAACCTGTTCAAGTATTAGTAGAGCTAGCAAACCCGTGTACCTTTGAGTTGTCAGTTGAAAGCATATATCTTTCTGTTAATTCTGAGATTTTTGAGGCATTTCCCACGAGTGTGACTCTTCTACCCAATACATCC
CAGATAATATCATTGTCTGGGATTCCCACCTCTGTTGGCCCATTGATAGTTGAAGGATGTATTGTTCATTGTTTTGGTGTAATAACTGAGCACCTTTTTAGAGATGTTGATGATCTTTTACTTGGAGCAGCACAAGGTCTTGTCTTGGTTGATCCTTTTCGAAGTTCTGGATTGCCCAAGTTAAGAAATGTTCCCAATCC
AAATATATCGGTGGTGCCATCATTACCACTCTTGATTCCTAATGTGGTTGGAGGAGATGGATCAACAGTCTTATATGAAGGGGAAATCCGGGATATCCAGATAAGTCTTGCAAATGCTGGCTCTGTTCCTGTGGTGGAGGCAAATGTTTCACTTTCTGGGAAGCAACAGGAAAATGTAATTTCTATTGGGCATGAAATGT
TACAGTCAGCTCTTCCTCTGCAGCCTGGTGCATCAGTGGTTATCCCTGTCAGGCTACAAGCTGGGCAACTGAATTTGGAACTAGAAAATGTTAGTAATAGAAATGGTCCTGGGAATGTTGGAAGGATATTCAAGGAGGGAAACAGTCCTTCATTGGTGATTCATTATGCAGGAACGTTGGCACAACTAGGAGATGACATA
CAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGTCCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAGATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGA
TAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGTTCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAGAGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATT
ATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTTTTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAGAGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGG
AACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTATGGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCTTCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCC
TGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCGTTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGTAGCTGGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTAC
CTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACTCTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAACTGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGgtacactatgatgtgtgttt
atcaagtgtaatgaggtggagaattgcaaatgcatgttttctaccaccacttattttcctatttctcattttggcaagacgataggcttgattgttttccacttaggttattcttccaactgagctccttttttcagGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTT
TCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAGTGTATGACCATTGCATCTGCTCCCAAGTGACTCCTTAGTCAAGTATGGCTCTGACAAATTATCGCTTGCATCTAAATTCTCTGAAATAAGTATGGAAGTGTGCCACTTATTTCAATTTCAAGTGTATTGCAACATGAA
ATGATTGCTATCTCTCATTCTCAGGCTTGAACAGGCATATGTACTGTCAACAGCATTTGTTACCATATGTACTGTCAGCAGCATTTGTTACCAATTCATGACAGTGGCTATCTTCAAGAAGCTGGTAAATGTTATAACAGGGTGGAATCTGCATTAACATTGCAACTTATTCTGAGCAGAATATCTGTTGCGATGGATCA
CTTCATTTTTACACTAGTAGCCTATTTTTGATATTAGGTTTGAGTTGTAGGAAATACAAGTACCTGGAAATAGTACTGAACTGATTCCAGATATTACTAAAACCAGCCAAGCTGGTGTAATGATGATAAATATTATACTCAAAGTCCATTTGTGATCATCCAGCATGTTCAGACAATCAAAGTTCATCTGGATAACTATC
ATTCAGTATCAAGCACCATGGAGTTTGCTTTGCCAAAAAGCTGTTTTGGCAATTTGATTATTTTACAAGGACTTGAGCTTCTAGTATTTTTGGAATGTCCATTTTATTGGCTTTAGGAAGAAATATGGCCCGAATGCTATCTGAAACTCTTGGAGTGTATATGCTAAGTTCCATGTCTGCGAAATTGTTTCTGGCAC
Intron 3 GTATGTTGAT ... ACGTGTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.11 | 3.3 | 5 | 11 |
| A2 | 54.11 | 4.7 | 4 | 6 |
| A3 | 29.41 | 6 | 2 | 3 |
| A4 | 57.11 | 5.3 | 8 | 6 |
| A5 | 28.15 | 5.7 | 2 | 2 |
| A6 | 46.67 | 4 | 7 | 0 |
| A7 | 14.29 | 3 | 1 | 0 |
| A8 | 20 | 2 | 1 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 20.64 | 2.3 | 1 | 0 |
>TRINITY_DN110287_c0_g1_i8 from sample A3 / Example spliced isoformCGGAAGAGTTCTGGGAGGGTTCTCATGGCAAACAGCAGCAGGGAGTGAGCCTTACACGCAAGATAATAGCCATAAACGACTAGATCTTTCACCAGGCTCGATCTAAAACATTCATATATAGGCTGGAGGAAGATGACAAAAAGCGGCAACATTTAATTATGTTCCCACCTGCAGATTGGAAAACTTTGGAATTTCACATG
CAGAATCTGCTGGCACCATTCTTAAGACTCCATTGGATTCTCAAGCTAGTCTAAGCTCGGAAGAGGTGATCAAAGCAAAGAAACGGAGGCTTGGACGGGCACAAAAGACAATTGGGGACTATTGTCTTTTGGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGAC
CAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCTTTAGTGATAGATAGGATGGGGCAGAAGGATCAAATGTTGGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGAAGGGTATCAACCATCAGCTTTGAACTCGAAGCCACTTTGAAACTGGCTCGTTTTCTCTGCAGAAGGGAGAT
TGCTAAGGAAGTAGTAGAATTACTGATGGGTGCTGCTGATGGTGCAAAAGCTCTCATAGATGCTAGTGATCGTTTGGTGTTGAATGTGGAAATTGCTCGTCTGTTTGGTGCTCTGGGCTATGACCGAAAGGCTGCTTTTTTTTCCAGGCAAGTGGCTCAGCTATATTTGCAGCAGGACAATTGTTGGGCTGCTATCAGTG
CATTGCAAGTCTTGGCGATGACATCTAAATCTTATCGTGTTCAAAGTAAAGCGGCCACCAATAAGTCCCATTATTCTTCAAATGAAGTCCAATCAGCTTGTAGTGATGGGGGCAGATTGCAAACCCAATCAATAGCTGCATTGTTTGAAAGTCAGTGGAGCACACTGCAAATGGTTGTGCTGAAAGAAATATTGTTGTCT
GCTGTACGTGCTGGTGATCCTTTTGCTGCATGGAGTGCAGCAGCTCGACTGTTGAGATTGCACTATCCACTTATACCACCTGCTGGTCAGAGTGGCCTTGCTAATGCACTGACAACTTCAGCTGAAAGGCTTCCTTCAGGAACACGGTGTGCAGATCCTGCTCTGCCTTTCATAAGGTTGTATTCAATCCCCTCACTTCC
TTCACAGATGGAGATTGTAAAGCGTGTTCCTGGAAAGGAAGACTGGTGGGCAGGATCTGCTCCCTCCGGTCCATTTATTTACACACCTTTTGGCAAAGGAGATGCTAGTGATGACAAGAAGCATGAAATTATCTGGATAGTTGGGGAACCTGTTCAAGTATTAGTAGAGCTAGCAAACCCGTGTACCTTTGAGTTGTCAG
TTGAAAGCATATATCTTTCTGTTAATTCTGAGATTTTTGAGGCATTTCCCACGAGTGTGACTCTTCTACCCAATACATCCCAGATAATATCATTGTCTGGGATTCCCACCTCTGTTGGCCCATTGATAGTTGAAGGATGTATTGTTCATTGGTTTGGTGTAATAACTGAGCACCTTTTTAGAGATGTTGATGATCTTTTA
CTTGGAGCAGCACAAGGTCTTGTCTTGGTTGATCCTTTTCGAAGTTCTGGATTGCCCAAGTTAAGAAATGTTCCCAATCCAAATATATCGGTGGTGCCATCATTACCACTCTTGATTCCTAATGTGGTTGGAGGAGATGGATCAACAGTCTTATATGAAGGGGAAATCCGGGATATCCAGATAAGTCTTGCAAATGCTGG
CTCTGTTCCTGTGGTGGAGGCAAATGTTTCACTTTCTGGGAAGCAACAGGAAAATGTAATTTCTATTGGGCATGAAATGTTACAGTCAGCTCTTCCTCTGCAGCCTGGTGCATCAGTGGTTATCCCTGTCAGGCTACAAGCTGGGCAACTGAATTTGGAACTAGAAAATGTTAGTAATAGAAATGGTCCTGGGAATGTTG
GAAGGATATTCAAGGAGGGAAACAGTCCTTCATTGGTGATTCATTATGCAGGAACGTTGGCACAACTAGGAGATGACATACAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGTCCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAG
ATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGATAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGTTCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAG
AGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATTATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTTTTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAG
AGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGGAACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTATGGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCT
TCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCCTGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCGTTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGT
AGCTGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTACCTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACTCTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAAC
TGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGTACACTATGATGTGTGTTTATCAAGTGTAATGAGGTGGAGAATTGCAAATGCATGTTTTCTACCACCACTTATTTTCCTATTTCTCATTTTGGCAAGACGATAGGCTTGATTGTTTTCCACTTAGGTTATTCTTCCAACT
GAGCTCCTTTTTTCAGGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAGTGTATGTCCATTGCA
>TRINITY_DN110287_c0_g1_i7 from sample A3 / Example unspliced isoform:CGGAAGAGTTCTGGGAGGGTTCTCATGGCAAACAGCAGCAGGGAGTGAGCCTTACACGCAAGATAATAGCCATAAACGACTAGATCTTTCACCAGGCTCGATCTAAAACATTCATATATAGGGTTATAGGGTTAGGGTTTTTTTGGTGTATGATTTTGCGACAATGGAGCCAGATGTAAGCATAGAGGGGGGTTGCACGA
TTCGCATTGTAGTGCTTCCCGTGGGTCACATTCCGGGTAGTCACATGAGGGATTATGTGTCCATCGTTGTACGGCACACCAAGGTCGATCTCTCAAGTATAAGTTCTTTCTACACCGAGCACCAAAAGAGTCCCTTTGCTCACCAGCCATGGGATACGGGGAGCCTGAGGTTCAAGTTCCTAGTGGGAGGAGCTCAGCAG
AGCCCCTGGGAGGATTTTCAAGCTCACCGGAAGATTCTCGGAGTTATAGGATTGTGCCACTGCCCATCGTCGCCGGATTTGGGGATCGTTCACGATCAGTTTATGACGATTTGCAAAGCTTATCCGGCTGCTTTGATTGCGAGATGCTTTGCATTCTATCCCAGCGACTTGCAGCTGGAGGAAGATGACAAAAAGCGGCA
ACATTTAATTATGTTCCCACCTGCAGATTGGAAAACTTTGGAATTTCACATGCAGACATTGATGCAGGATCTCGCAGCTTCTTTATTGATGGATTTTGAAAAATGGGTCCTGCATGCAGAATCTGCTGGCACCATTCTTAAGACTCCATTGGATTCTCAAGCTAGTCTAAGCTCGGAAGAGGTGATCAAAGCAAAGAAAC
GGAGGCTTGGACGGGCACAAAAGACAATTGGGGACTATTGTCTTTTGGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGACCAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCTTTAGTGgtatgttgattttgcaaacgtatgcctattgatagc
tgtgggtgttgttaaatacaaatttacaaatggggcaatgattcttatgcagatatctttcagggattcattcatttctttctgtttctacattatttgttaggtttaaaataattcttgttatttcttggttgggactcttaaattgtatttgcgtatttgtgcatgcgtgcttggtatctctaaactgtgaatattga
tttccttttgtcccatctgcttctcataataaaattagccaattatatagtggcatttatgagggaatgctatgtttctgaatgtgaatctcaacttggaaaccttttcacgtgtctagATAGATAGGATGGGGCAGAAGGATCAAATGTTGGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGA
AGGTGAGTTGGTGGTCACCAAGAGACATAAATATATTTTGATTTTTTTTGACTTGGTTGGCTGG
Intron 4 GTTGTATTCA ... CATTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 82.61 | 4 | 7 | 19 |
| A2 | 56.52 | 10 | 8 | 13 |
| A3 | 66.67 | 4 | 5 | 8 |
| A4 | 81.25 | 3 | 5 | 13 |
| A5 | 61.54 | 5 | 6 | 8 |
| A6 | 75 | 1 | 0 | 3 |
| A7 | 71.43 | 8 | 0 | 20 |
| A8 | 85.71 | 1 | 0 | 6 |
| A9 | 78.57 | 3 | 2 | 11 |
| A10 | 81.25 | 3 | 5 | 13 |
>TRINITY_DN42730_c0_g1_i4 from sample A7 / Example spliced isoformGGGCAGTGTATGTGCTTTAGTGGGTATCAACCATCAGCTTTGAACTCGAAGCCACTTTGAAACTGGCTCGTTTTCTCTGCAGAAGGGAGATTGCTAAGGAAGTAGTAGAATTACTGATGGGTGCTGCTGATGGTGCAAAAGCTCTCATAGATGCTAGTGATCGTTTGGTGTTGAATGTGGAAATTGCTCGTCTGTTTGGT
GCTCTGGGCTATGACCGAAAGGCTGCTTTTTTTTCCAGGCAAGTGGCTCAGCTATATTTGCAGCAGGACAATTGTTGGGCTGCTATCAGTGCATTGCAAGTCTTGGCGATGACATCTAAATCTTATCGTGTTCAAAGTAAAGCGGCCACCAATAAGTCCCATTATTCTTCAAATGAAGTCCAATCAGCTTGTAGTGATGG
GGGCAGATTGCAAACCCAATCAATAGCTGCATTGTTTGAAAGTCAGTGGAGCACACTGCAAATGGTTGTGCTGAAAGAAATATTGTTGTCTGCTGTACGTGCTGGTGATCCTTTTGCTGCATGGAGTGCAGCAGCTCGACTGTTGAGATTGCACTATCCACTTATACCACCTGCTGGTCAGAGTGGCCTTGCTAATGCAC
TGACAACTTCAGCTGAAAGGCTTCCTTCAGGAACACGGTGTGCAGATCCTGCTCTGCCTTTCATAAGGAACGTTGGCACAACTAGGAGATGACATACAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGTCCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAAT
GGAAATTCCAGCAGAGATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGATAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGTTCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCA
TCCAGGGAGACAAAAGAGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATTATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTTTTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAA
ATTTCAAGTAATGCAGAGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGGAACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTATGGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCT
TGGAAGGAATCATTCTTCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCCTGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCGTTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTA
TCACTTGCCGAGATGTAGCTGGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTACCTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACTCTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTG
AGAGCCCGTGCAAGAACTGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGTACACTATGATGTGTGTTTATCAAGTGTAATGAGGTGGAGAATTGCAAATGCATGTTTTCTACCACCACTTATTTTCCTATTTCTCATTTTGGCAAGACGATAGGCTTGATTGTTTTCCACTT
AGGTTATTCTTCCAACTGAGCTCCTTTTTTCAGGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAGTGTATGACCATTGCATCTGCTCCCAAGTGACTCCTTAGTCAA
GTATGGCTCTGACAAATTATCGCTTGCATCTAAATTCTCTGAAATAAGTATGGAAGTGTGCCACTTATTTCAATTTCAAGTGTATTGCAACATGAAATGATTGCTATCTCTCATTCTCAGGCTTGAACAGGCATATGTACTGTCAACAGCATTTGTTACCATATGTACTGTCAGCAGCATTTGTTACCAATTCATGACAG
TGGCTATCTTCAAGAAGCTGGTAAATGTTATAACAGGGTGGAATCTGCATTAACATTGCAACTTATTCTGAGCAGAATATCTGTTGCGATGGATCACTTCATTTTTACACTAGTAGCCTATTTTTGATATTAGGTTTGAGTTGTAGGAAATACAAGTACCTGGAAATAGTACTGAACTGATTCCAGATATTACTAAAACC
AGCCAAGCTGGTGTAATGATGATAAATATTATACTCAAAGTCCATTTGTGATCATCCAGCATGTTCAGACAATCAAAGTTCATCTGGATAACTATCATTCAGTATCAAGCACCATGGAGTTTGCTTTGCCAAAAAGCTGTTTTGGCAATTTGATTATTTTACAAGGACTTGAGCTTCTAGTATTTTTGGAATGTCCATTT
TATTGGCTTTAGGAAGAAATATGGCCCGAATGCTATCTGAAACTCTTGGAGTGTATATGCTAAGTTCCATGTCTGCGAAATTGTTTCTGGCATATCTTCTTGTTTTGAAGAGGCAAGTTTTATGTTTGATTTTACTTGTCCAAGAATGCCTTTCTTTTTGCAGTCGGTTATGTTTTGTAGGTTGTAAGGTGTCATCCATC
TTATCCGTGACAAATTTATAGATTGCTGTTTTTATTTTTACACCAGTGTAAGATTAAGCATTCCACTTCAACATGCATGGTGAATTCAAT
>TRINITY_DN42730_c0_g1_i3 from sample A7 / Example unspliced isoform:GGCCGGTTCACCAGTTGATGCAAATGCTCACTATTCTACAGCAATCGAACTTGCACGATTAACAGGGGACCAATTTTGGCATGCTGGGGCTATAGAGGGCAGTGTATGTGCTTTAGTGATAGATAGGATGGGGCAGAAGGATCAAATGTTGGAGGAGGAAGTGAAATATCGCTACTATGAAGTTATACAACTATATCGAA
GGGTATCAACCATCAGCTTTGAACTCGAAGCCACTTTGAAACTGGCTCGTTTTCTCTGCAGAAGGGAGATTGCTAAGGAAGTAGTAGAATTACTGATGGGTGCTGCTGATGGTGCAAAAGCTCTCATAGATGCTAGTGATCGTTTGGTGTTGAATGTGGAAATTGCTCGTCTGTTTGGTGCTCTGGGCTATGACCGAAAG
GCTGCTTTTTTTTCCAGGCAAGTGGCTCAGCTATATTTGCAGCAGGACAATTGTTGGGCTGCTATCAGTGCATTGCAAGTCTTGGCGATGACATCTAAATCTTATCGTGTTCAAAGTAAAGCGGCCACCAATAAGTCCCATTATTCTTCAAATGAAGTCCAATCAGCTTGTAGTGATGGGGGCAGATTGCAAACCCAATC
AATAGCTGCATTGTTTGAAAGTCAGTGGAGCACACTGCAAATGGTTGTGCTGAAAGAAATATTGTTGTCTGCTGTACGTGCTGGTGATCCTTTTGCTGCATGGAGTGCAGCAGCTCGACTGTTGAGATTGCACTATCCACTTATACCACCTGCTGGTCAGAGTGGCCTTGCTAATGCACTGACAACTTCAGCTGAAAGGC
TTCCTTCAGGAACACGGTGTGCAGATCCTGCTCTGCCTTTCATAAGgttgtattcaatcccctcacttccttcacagatggagattgtaaagcgtgttcctggaaaggaagactggtgggcaggatctgctccctccggtccatttatttacacaccttttggcaaaggagatgctagtgatgacaagaagcatgaaatt
atctggatagttggggaacctgttcaagtattagtagagctagcaaacccgtgtacctttgagttgtcagttgaaagcatatatctttctgttaattctgagatttttgaggcatttcccacgagtgtgactcttctacccaatacatcccagataatatcattgtctgggattcccacctctgttggcccattgatagt
tgaaggatgtattgttcattgttttggtgtaataactgagcacctttttagagatgttgatgatcttttacttggagcagcacaaggtcttgtcttggttgatccttttcgaagttctggattgcccaagttaagaaatgttcccaatccaaatatatcggtggtgccatcattaccactcttgattcctaatgtggttg
gaggagatggatcaacagtcttatatgaaggggaaatccgggatatccagataagtcttgcaaatgctggctctgttcctgtggtggaggcaaatgtttcactttctgggaagcaacaggaaaatgtaatttctattgggcatgaaatgttacagtcagctcttcctctgcagcctggtgcatcagtggttatccctgtc
aggctacaagctgggcaactgaatttggaactagaaaatgttagtaatagaaatggtcctgggaatgttggaaggatattcaaggagggaaacagtccttcattggtgattcattatgcagGAACGTTGGCACAACTAGGAGATGACATACAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATT
ACAGGTTCGTGTCCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAGATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGATAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTC
TTGAACTTGAGTTCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAGAGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATTATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTT
GATAAATCTTTTTTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAGAGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGGAACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACA
GACATCTGTTATGGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCTTCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCCTGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTT
TGGAGATCCTCGTTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGTAGCTGGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTACCTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCC
GGCGAATATACTCTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAACTGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGTACACTATGATGTGTGTTTATCAAGTGTAATGAGGTGGAGAATTGCAAATGCATGTTTTCTACCACCAC
TTATTTTCCTATTTCTCATTTTGGCAAGACGATAGGCTTGATTGTTTTCCACTTAGGTTATTCTTCCAACTGAGCTCCTTTTTTCAGGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCA
CAGGTCCAAGAGTGTATGACCATTGCATCTGCTCCCAAGTGACTCCTTAGTCAAGTATGGCTCTGACAAATTATCGCTTGCATCTAAATTCTCTGAAATAAGTATGGAAGTGTGCCACTTATTTCAATTTCAAGTGTATTGCAACATGAAATGATTGCTATCTCTCATTCTCAGGCTTGAACAGGCATATGTACTGTCAA
CAGCATTTGTTACCATATGTACTGTCAGCAGCATTTGTTACCAATTCATGACAGTGGCTATCTTCAAGAAGCTGGTAAATGTTATAACAGGGTGGAATCTGCATTAACATTGCAACTTATTCTGAGCAGAATATCTGTTGCGATGGATCACTTCATTTTTACACTAGTAGCCTATTTTTGATATTAGGTTTGAGTTGTAG
GAAATACAAGTACCTGGAAATAGTACTGAACTGATTCCAGATATTACTAAAACCAGCCAAGCTGGTGTAATGATGATAAATATTATACTCAAAGTCCATTTGTGATCATCCAGCATGTTCAGACAATCAAAGTTCATCTGGATAACTATCATTCAGTATCAAGCACCATGGAGTTTGCTTTGCCAAAAAGCTGTTTTGGC
AATTTGATTATTTTACAAGGACTTGAGCTTCTAGTATTTTTGGAATGTCCATTTTATTGGCTTTAGGAAGAAATATGGCCCGAATGCTATCTGAAACTCTTGGAGTGTATATGCTAAGTTCCATGTCTGCGAAATTGTTTCTGGCATATCTTCTTGTTTTGAAGAGGCAAGTTTTATGTTTGATTTTACTTGTCCAAGAA
TGCCTTTCTTTTTGCAGTCGGTTATGTTTTGTAGGTTGTAAGGTGTCATCCATCTTATCCGTGACAAATTTATAGATTGCTGTTTTTATTTTTACACCAGTGTAAGATTAAGCATTCCACTTCAACATGCATGGTGAATTCAAT
Intron 5 GTATGGCTCT ... TCATTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.54 | 5 | 11 | 5 |
| A2 | 66.67 | 3 | 6 | 6 |
| A3 | 60 | 1 | 0 | 3 |
| A4 | 70.37 | 4 | 8 | 11 |
| A5 | 52.94 | 4 | 6 | 3 |
| A6 | 62.79 | 8 | 10 | 17 |
| A7 | 64.18 | 12 | 20 | 23 |
| A8 | 71.43 | 8 | 21 | 19 |
| A9 | 63.33 | 11 | 14 | 24 |
| A10 | 52.94 | 8 | 14 | 4 |
>TRINITY_DN30143_c0_g1_i2 from sample A6 / Example spliced isoformTGTTCATTGTTTTGGTGTAATAACTGAGCACCTTTTTAGAGATGTTGATGATCTTTTACTTGGAGCAGCACAAGGTCTTGTCTTGGTTGATCCTTTTCGAAGTTCTGGATTGCCCAAGTTAAGAAATGTTCCCAATCCAAATATATCGGTGGTGCCATCATTACCACTCTTGATTCCTAATGTGGTTGGAGGAGATGGAT
CAACAGTCTTATATGAAGGGGAAATCCGGGATATCCAGATAAGTCTTGCAAATGCTGGCTCTGTTCCTGTGGTGGAGGCAAATGTTTCACTTTCTGGGAAGCAACAGGAAAATGTAATTTCTATTGGGCATGAAATGTTACAGTCAGCTCTTCCTCTGCAGCCTGGTGCATCAGTGGTTATCCCTGTCAGGCTACAAGCT
GGGCAACTGAATTTGGAACTAGAAAATGTTAGTAATAGAAATGGTCCTGGGAATGTTGGAAGGATATTCAAGGAGGGAAACAGTCCTTCATTGGTGATTCATTATGCAGGAACGTTGGCACAACTAGGAGATGACATACAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGT
CCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAGATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGATAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGT
TCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAGAGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATTATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTT
TTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAGAGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGGAACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTAT
GGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCTTCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCCTGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCG
TTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGTAGCTGGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTACCTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACT
CTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAACTGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGTACACTATGATGTGTGTTTATCAAGTGTAATGAGGTGGAGAATTGCAAATGCATGTTTTCTACCACCACTTATTTTCCTAT
TTCTCATTTTGGCAAGACGATAGGCTTGATTGTTTTCCACTTAGGTTATTCTTCCAACTGAGCTCCTTTTTTCAGGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAG
TGTATGACCATTGCATCTGCTCCCAAGTGACTCCTTAGTCAAGCTTGAACAGGCATATGTACTGTCAACAGCATTTGTTACCATATGTACTGTCAGCAGCATTTGTTACCAATTCATGACAGTGGCTATCTTCAAGAAGCTGGTAAATGTTATAACAGGGTGGAATCTGCATTAACATTGCAACTTATTCTGAGCAGAAT
ATCTGTTGCGATGGATCACTTCATTTTTACACTAGTAGCCTATTTTTGATATTAGGTTTGAGTTGTAGGAAATACAAGTACCTGGAAATAGTACTGAACTGATTCCAGATATTACTAAAACCAGCCAAGCTGGTGTAATGATGATAAATATTATACTCAAAGTCCATTTGTGATCATCCAGCATGTTCAGACAATCAAAG
TTCATCTGGATAACTATCATTCAGTATCAAGCACCATGGAGTTTGCTTTGCCAAAAAGCTGTTTTGGCAATTTGATTATTTTACAAGGACTTGAGCTTCTAGTATTTTTGGAATGTCCATTTTATTGGCTTTAGGAAGAAATATGGCCCGAATGCTATCTGAAACTCTTGGAGTGTATATGCTAAGTTCCATGTCTGCGA
AATTGTTTCTGGCATATCTTCTTGTTTTGAAGAGGCAAGTTTTATGTTTGATTTTACTTGTCCAAGAATGCCTTTCTTTTTGCAGTCGGTTATGTTTTGTAGGTTGTAAGGTGTCATCCATCTTATCCGTGACAAATTTATAGATTGCTGTTTTTATTTTTACACCAGTGTAAGATTAAGCATTCCACTTCAACATGCAT
GGTGAATTCAATACAAAAA
>TRINITY_DN30143_c0_g1_i1 from sample A6 / Example unspliced isoform:TGTTCATTGTTTTGGTGTAATAACTGAGCACCTTTTTAGAGATGTTGATGATCTTTTACTTGGAGCAGCACAAGGTCTTGTCTTGGTTGATCCTTTTCGAAGTTCTGGATTGCCCAAGTTAAGAAATGTTCCCAATCCAAATATATCGGTGGTGCCATCATTACCACTCTTGATTCCTAATGTGGTTGGAGGAGATGGAT
CAACAGTCTTATATGAAGGGGAAATCCGGGATATCCAGATAAGTCTTGCAAATGCTGGCTCTGTTCCTGTGGTGGAGGCAAATGTTTCACTTTCTGGGAAGCAACAGGAAAATGTAATTTCTATTGGGCATGAAATGTTACAGTCAGCTCTTCCTCTGCAGCCTGGTGCATCAGTGGTTATCCCTGTCAGGCTACAAGCT
GGGCAACTGAATTTGGAACTAGAAAATGTTAGTAATAGAAATGGTCCTGGGAATGTTGGAAGGATATTCAAGGAGGGAAACAGTCCTTCATTGGTGATTCATTATGCAGGAACGTTGGCACAACTAGGAGATGACATACAGAATAATTCTTGTGCATACCCCCCGGGTAGACGACTGGCTGTTCCATTACAGGTTCGTGT
CCTGCAGGGACTATCCCTTGTGCAGGCTCGCTTGCTTTCAATGGAAATTCCAGCAGAGATCAATAGAACCCTTCCAGCGCCAAGTGCTGCAGGTCAATATATCATGGATGGGGGCACAACAATGGAGAATAATGCTGATAGCTTAGTTAAAATTGATCCATACAGAGGAAGCTGGGGACTGCGTCTTCTTGAACTTGAGT
TCCGGAATCCAACAGAAGTCATGTTCGAGATAACGGTCTGCATCCAGGGAGACAAAAGAGAAGATGAAAATAAAGAGACAGTAAAAGATGGGCAAGCAGTGGATTGCCTTTATCCAACCACAAGAATTGATAGGGATTATGCAGCCAGGGTTTTGATACCATTGGAGCATTTCAAACTACCTGTTCTTGATAAATCTTTT
TTTGGGATGGAAACCAAAGGGAAGGAAGGTTTTGTGGTTAAAATTTCAAGTAATGCAGAGAAACAAACAAAGGCTGAATTAAATGCAGCTATTAAAGATTTGACTTCTAGAATACAAGTAAAATGGCAGTCTGGAAGGAACAGTTTTGGAGAGATGAACATCAAAGATGCAGTTCAAGAGGCATTACAGACATCTGTTAT
GGATGTTTTGTTGCCAGATCCATTAACTTTTGGTTTCAGGCTTGGAAGGAATCATTCTTCAAATGGCATCATTGACACATCACAGGAAGCTAATTTAAACACCCCCATAACTGAGACCGGTCGTCATTCTGATTTTCCTGGAAAAGGTCAACCAAAGGGTTCTATATTAGCTCATGACTTGACGCCTTTGGAGATCCTCG
TTCGTAATAACACAAAGGAGGCAATCAGGATGATCTTGAGTATCACTTGCCGAGATGTAGCTGGAGAAAATTGCTTTGATGGTAGCAAGGCAACTGTCCTCTGGGCTGGTGTTTTGAGTGGAATTGAAGTGGAAGTACCTCCACTGGGAGAGGCAATCCACCCATTTGCTGTGTGCTTTTTGGTGCCCGGCGAATATACT
CTTCTAGGAGCTGCAGTTATACACCACGCAAATGAAATTCTGAGAGCCCGTGCAAGAACTGATTCAACTCAGGAGCCCATTTTCTGCAGTGGTCCACCTTTTCGTGTACATGTTATTGGTACACTATGATGTGTGTTTATCAAGTGTAATGAGGTGGAGAATTGCAAATGCATGTTTTCTACCACCACTTATTTTCCTAT
TTCTCATTTTGGCAAGACGATAGGCTTGATTGTTTTCCACTTAGGTTATTCTTCCAACTGAGCTCCTTTTTTCAGGCAGAATTTTTGTTACCATGATGAAAAGCTCATTCGTTTATGTACGTTCATTGAGTTGAGTTTTCTACACCTGAAATAAAACAGAAGACATCTCAAAAGAGCTAGTACAGGCACAGGTCCAAGAG
TGTATGACCATTGCATCTGCTCCCAAGTGACTCCTTAGTCAAgtatggctctgacaaattatcgcttgcatctaaattctctgaaataagtatggaagtgtgccacttatttcaatttcaagtgtattgcaacatgaaatgattgctatctctcattctcagGCTTGAACAGGCATATGTACTGTCAACAGCATTTGTTA
CCATATGTACTGTCAGCAGCATTTGTTACCAATTCATGACAGTGGCTATCTTCAAGAAGCTGGTAAATGTTATAACAGGGTGGAATCTGCATTAACATTGCAACTTATTCTGAGCAGAATATCTGTTGCGATGGATCACTTCATTTTTACACTAGTAGCCTATTTTTGATATTAGGTTTGAGTTGTAGGAAATACAAGTA
CCTGGAAATAGTACTGAACTGATTCCAGATATTACTAAAACCAGCCAAGCTGGTGTAATGATGATAAATATTATACTCAAAGTCCATTTGTGATCATCCAGCATGTTCAGACAATCAAAGTTCATCTGGATAACTATCATTCAGTATCAAGCACCATGGAGTTTGCTTTGCCAAAAAGCTGTTTTGGCAATTTGATTATT
TTACAAGGACTTGAGCTTCTAGTATTTTTGGAATGTCCATTTTATTGGCTTTAGGAAGAAATATGGCCCGAATGCTATCTGAAACTCTTGGAGTGTATATGCTAAGTTCCATGTCTGCGAAATTGTTTCTGGCATATCTTCTTGTTTTGAAGAGGCAAGTTTTATGTTTGATTTTACTTGTCCAAGAATGCCTTTCTTTT
TGCAGTCGGTTATGTTTTGTAGGTTGTAAGGTGTCATCCATCTTATCCGTGACAAATTTATAGATTGCTGTTTTTATTTTTACACCAGTGTAAGATTAAGCATTCCACTTCAACATGCATGGTGAATTCAATACAAAAA