NA ----> NA

Intron 1 GTATGATCCC ... TTTCCGCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	44.18	2.1	1.8	2.1
A2	29.95	2.1	0.7	1
A3	60.3	4.2	5.8	6.1
A4	100	0	1	1
A5	-1	0	0	0
A6	45.04	20.3	17.1	15
A7	43.74	13.4	9.9	10.7
A8	34.16	22.1	8.7	13.9
A9	39.51	22.1	13.9	14.8
A10	48.09	10.8	8.7	7

>TRINITY_DN97257_c0_g2_i2 from sample A3 / Example spliced isoform

TAAATACAAAGATTGGAGTCCCTTCGATAGCTCAACTTCGCTGTGTCGTATATTGATCCCACCGCGAGGATGTTCACCAATGAAGAGAGGCAGAAACAGCGCACTGGCAAGTATGGTACCCCGAGGGAACAATACCTGCAGGAATTGGTGACTGAGTTTCAGAAGACACCAAATGAGGAATCAAAGGAGCAGATTGTTGC
ACATTTGGCTAATTTTGCCTGAATGTCTTGGATCTATTCCTCGACTGCATAACAGAGTCAAATGAAAAACTTGTTGAATTTGGAGCTGCTGGCATATGTAACTGTTCTCCTGACCCAGCAAATGCTGCAGTTATTGCTAAAAATGGC

>TRINITY_DN97257_c0_g2_i1 from sample A3 / Example unspliced isoform:

TAAATACAAAGATTGGAGTCCCTTCGATAGCTCAACTTCGCTGTGTCGTATATTGATCCCACCGCGAGGATGTTCACCAATGAAGAGAGGCAGAAACAGCGCACTGGCAAGTATGGTACCCCGAGGGAACAATACCTGCAGGAATTGGTGACTGAGTTTCAGAAGACACCAAATGAGGAATCAAAGGAGCAGATTGTTGC
ACATTTGGCTAATTTTGCgtatgatccctacaactataattttttccgcaagCTGAATGTCTTGGATCTATTCCTCGACTGCATAACAGAGTCAAATGAAAAACTTGTTGAATTTGGAGCTGCTGGCATATGTAACTGTTCTCCTGACCCAGCAAATGCTGCAGTTATTGCTAAAAATGGC

Intron 2 GTATGGTACC ... ATACCTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	2	3
A2	100	0	15	15
A3	100	0	7	8
A4	69.05	1	2	2.5
A5	100	0	2	2
A6	90.72	4	40	43
A7	84.86	6	33.5	36
A8	86.99	5	33.5	35.5
A9	86.03	6	37.5	41
A10	95.29	1	22.5	23

>TRINITY_DN39851_c0_g1_i1 from sample A6 / Example spliced isoform

TAAATACAAAGATTGGAGTCCCTTCGATAGCTCAACTTCGCTGTGTCGTATGTTGATCCCACCGCGAGGATGTTCACCAATGAAGAGAGGCAGAAACAGCGCACTGGCAAGAATTGGTGACTGAGTTTCAGAAGACACCAAATGAGGAATCAAAGGAGCAGATTGTTGCACATTTGGCTAATTTTGCGTATGATCCCTAC
AACTATAATTTTTTCCGCAAGCTGAATGTCTTGGATCTATTCCTCGACTGCATAACAGAGTCAAATGAAAAACTTGTTGAATTTGGAGCTGCTGGCATATGTAACTGTTCTCCTGACCCAGCAAATGCTGCAGTTATTGCTAAAAATGGCGGTATCAGTCTTATGATATCTTGTTTGTCCAGTCCAGTGCAGAATACAGT
TCTCTCAACAATTGCGGCTCTCTATTACCTATGTACTCCATCAACAAAGGCAGAGATCTTAACACCAGAAGTTATTGAAGTTATGAGGAAATATGAAGCTGCTAGATCAATCAATGCCAGGTTTAGTAATCTAGCAAAGGCTTTTTTGGATAAACATGTTAAAAGTTGATCTAGTCTTTCAACATTTTGTCCCAGCATTC
CAGACTCTAATCTCTCTTGTACTAGCAACATATCTATGTTAAATTTGTATAGCTACTAGGGGAATTCCTTTTAAATTATAATGTGATCATTGTTTTACTTAGTTATTTTGACTATATGAATTATATTGATGCTAAGTCATAGGAACTTTACGCACATCTTAAGAATGGATATAAAGATCTGAAACAAGAAAAAAATTCGA
GAGTTTGCGTGCTACAGTTTTAACCTTTGGTGGCAACTAATCAACAGATGCAATAATGCTTATTTTAGTTAGTCATGGGTTCTTGTTTCTTATTATTGGGTGG

>TRINITY_DN39851_c0_g1_i4 from sample A6 / Example unspliced isoform:

TAAATACAAAGATTGGAGTCCCTTCGATAGCTCAACTTCGCTGTGTCGTATGTTGATCCCACCGCGAGGATGTTCACCAATGAAGAGAGGCAGAAACAGCGCACTGGCAAgtatggtaccccgagggaacaatacctgcagGAATTGGTGACTGAGTTTCAGAAGACACCAAATGAGGCGAGGTGCTCTACAGCCACATA
TGATAAAGATGTCAGAATCAAAGGAGCAGATTGTTGC