sp|P28186|RAE1C_ARATH ----> Ras-related protein RABE1c

Intron 1 GTCTGTATCG ... CAATTGCAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	61.32	94	174	124
A2	57.82	116	169	149
A3	60.64	110	159	180
A4	59.66	94	143	135
A5	63.33	44	78	74
A6	61.08	224	372	331
A7	62.08	371	651	564
A8	61	202	309	323
A9	58.63	339	489	472
A10	58.55	395	637	479

>TRINITY_DN43682_c0_g11_i1 from sample A7 / Example spliced isoform

AGTAAAGGCTCGGTCGCATTAAAAATGTACGCGGATTTGTGGGAGGAGGTGATTCCGGTTTGAATAGGAATTTAAACACAGAGCGAGCGTGTAGGTGAAAGTTGAATGAGTCTTTCTGCTTCCATTTTGTGGTTGAGAAGGGCGTTCCAGCGATCGAATGCATAAAACTGAAATGCATCACTCGATCTGAATCAAAATGG
TCTTAAGCAATCGAATTTGAACCAATTGGCAGGGCATTTGAGCACCTCGTTCCTTTTTTCCTCGTCGGGTCTGGCGCGCACATTGCTCAAGCGATCGCTCGGGTAACATCTCTCTCTCCCCTATCGGGATGGCTGCGAGGGCTCGGGCTGACTACGATCACCTCATAAAGTTGCTGATGATCGGTGACAGCGGTGTCGGT
AAAAGTTGCCTCCTGTTGCGTTTTGTTGATGACTCCTTTACCACAAGTTTCATAACTACCATAGGGATTGACTTCAAAATTAGGACCATCGAAATAGATGGAAAACGGATCAAATTACAGATTTGGGACACTGCTGGTCAAGAGCGCTTCCGAACAATTACCACTGCATATTATCGGGGTGCAATGGGAATTCTTCTGAT
ATATGACGTCACCGATGAGTCATCCTTCAACAACATTCGCAACTGGATCAGGAATATTGAGCAACACGCTTCTGACAATGTGAATAAAATATTAGTAGGCAACAAAGCAGACATGGATGAGAGCAAGAGGGCTGTTCCCACGGCACGGGGTCAAGCACTAGCAGATGAGTATGGCATCAAGTTCTTTGAGACTAGTGCAA
AAACAAACTTGAACGTTGAGCAGGTTTTCTTTAAACTTGGAAGGGATATAAAGCAAAGGCTTGAAGAAAGTGAATCAAGGGTTGAGCCAAATACTATAAAACTAAACAAACCAGATCAAGCAAAAGGTCCAGAAAATGCTCCACAGAAATCGAATTGCTGCAGTTCTTGAAGTTGTATTGCCTTAGAAGGCTCAACCAAT
GGATCATTTTCTGGTTCATTCTTACAGAAGAAGGCGCCTTACTAATGAATTGTGTCTTATCAAGTTGCCAAGTATTCTGCTAGTTATGATAGTCTGAGAACAATGTGGATGATGGTCTAATTGAAAGGAATCATTCATGAGTTACCTATTCTTTTTTTAGATTAGTCTCCTGTGTGTTTTGTAGTGAATTCTTTGGAGGA
CTCGATCCTGTGAGTCAAATTTGGTGTGTAGCACACTATTTGATGACCTGGACTCCTCTATAGAGGTTTTGTGAACTTGCGCCAGGCATTATTAAGTTTTTCCTGGGTGTGATCTGGGGCAGTCAAATCATATGTTAAAAATTGATTAGTTTCTCTCCATTGTCTGTTATGTGTGCCTGGTTCTGGGTAAGAGATTTTTT
TGCCCAACAACGAAATTGATATATGTGCATGCCTTTTTTTATTAAGATTATGGAAGTTCAATCAGAAGATTGTTAAAGTTTTTGGG

>TRINITY_DN43682_c0_g11_i2 from sample A7 / Example unspliced isoform:

AGTAAAGGCTCGGTCGCATTAAAAATGTACGCGGATTTGTGGGAGGAGGTGATTCCGGTTTGAATAGGAATTTAAACACAGAGCGAGCGTGTAGGTGAAAGTTGAATGAGTCTTTCTGCTTCCATTTTGTGGTTGAGAAGGGCGTTCCAGCGATCGAATGCATAAAACTGAAATGCATCACTCGATCTGAATCAAAATGG
TCTTAAGCAATCGAATTTGAACCAATTGGCAGGGCATTTGAGCACCTCGTTCCTTTTTTCCTCGTCGGGTCTGGCGCGCACATTGCTCAAGCGgtctgtatcgagctgctcgaaccccctgcgtattcagattgactatttttgtggctcgaaccctgcatctctgaagcctgattggtgtggattccattattttacca
attgcaagATCGCTCGGGTAACATCTCTCTCTCCCCTATCGGGATGGCTGCGAGGGCTCGGGCTGACTACGATCACCTCATAAAGTTGCTGATGATCGGTGACAGCGGTGTCGGTAAAAGTTGCCTCCTGTTGCGTTTTGTTGATGACTCCTTTACCACAAGTTTCATAACTACCATAGGGATTGACTTCAAAATTAGGA
CCATCGAAATAGATGGAAAACGGATCAAATTACAGATTTGGGACACTGCTGGTCAAGAGCGCTTCCGAACAATTACCACTGCATATTATCGGGGTGCAATGGGAATTCTTCTGATATATGACGTCACCGATGAGTCATCCTTCAACAACATTCGCAACTGGATCAGGAATATTGAGCAACACGCTTCTGACAATGTGAAT
AAAATATTAGTAGGCAACAAAGCAGACATGGATGAGAGCAAGAGGGCTGTTCCCACGGCACGGGGTCAAGCACTAGCAGATGAGTATGGCATCAAGTTCTTTGAGACTAGTGCAAAAACAAACTTGAACGTTGAGCAGGTTTTCTTTAAACTTGGAAGGGATATAAAGCAAAGGCTTGAAGAAAGTGAATCAAGGGTTGA
GCCAAATACTATAAAACTAAACAAACCAGATCAAGCAAAAGGTCCAGAAAATGCTCCACAGAAATCGAATTGCTGCAGTTCTTGAAGTTGTATTGCCTTAGAAGGCTCAACCAATGGATCATTTTCTGGTTCATTCTTACAGAAGAAGGCGCCTTACTAATGAATTGTGTCTTATCAAGTTGCCAAGTATTCTGCTAGTT
ATGATAGTCTGAGAACAATGTGGATGATGGTCTAATTGAAAGGAATCATTCATGAGTTACCTATTCTTTTTTTAGATTAGTCTCCTGTGTGTTTTGTAGTGAATTCTTTGGAGGACTCGATCCTGTGAGTCAAATTTGGTGTGTAGCACACTATTTGATGACCTGGACTCCTCTATAGAGGTTTTGTGAACTTGCGCCAG
GCATTATTAAGTTTTTCCTGGGTGTGATCTGGGGCAGTCAAATCATATGTTAAAAATTGATTAGTTTCTCTCCATTGTCTGTTATGTGTGCCTGGTTCTGGGTAAGAGATTTTTTTGCCCAACAACGAAATTGATATATGTGCATGCCTTTTTTTATTAAGATTATGGAAGTTCAATCAGAAGATTGTTAAAGTTTTTGG
G

Intron 2 GTGGGTTTAC ... TCATGATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25.61	183	1	63
A2	24.36	177	0	57
A3	26.16	206	0	73
A4	23.2	96	0	29
A5	28.99	49	0	20
A6	26.64	424	4	154
A7	25.51	724	0	248
A8	22.91	693	1	206
A9	23.73	691	2	215
A10	27.29	618	0	232

>TRINITY_DN41257_c0_g4_i2 from sample A6 / Example spliced isoform

CGGGGACTAGTGTGATTTTTTTAATAAATTTATCTATTTCGAACAGTAAAGGCTCGGTCGCATTAAAAATGTACGCGGATTTGTGGGAGGAGGTGATTCCGGTTTGAATAGGAATTTAAACACAGAGCGAGCGTGTAGGTGAAAGTTGAATGAGTCTTTCTGCTTCCATTTTGTGGTTGAGAAGGGCGTTCCAGCGATCG
AATGCATAAAACTGAAATGCATCACTCGATCTGAATCAAAATGGTCTTAAGCAATCGAATTTGAACCAATTGGCAGGGCATTTGAGCACCTCGTTCCTTTTTTCCTCGTCGGGTCTGGCGCGCACATTGCTCAAGCGGTCTGTATCGAGCTGCTCGAACCCCCTGCGTATTCAGATTGACTATTTTTGTGGCTCGAACCC
TGCATCTCTGAAGCCTGATTGGTGTGGATTCCATTATTTTACCAATTGCAAGATCGCTCGGGTAACATCTCTCTCTCCCCTATCGGGATGGCTGCGAGGGCTCGGGCTGACTACGATCACCTCATAAAGTTGCTGATGATCGGTGACAGCGGTGTCGGTAAAAGTTGCCTCCTGTTGCGTTTTGTTGATGACTCCTTTAC
CACAAGTTTCATAACTACCATAGGGATTGACTTCAAAATTAGGACCATCGAAATAGATGGAAAACGGATCAAATTACAGATTTGGGACACTGCTGGTCAAGAGCGCTTCCGAACAATTACCACTGCATATTATCGGGGTGCAATGGGAATTCTTCTGATATATGACGTCACCGATGAGTCATCCTTCAACAACATTCGCA
ACTGGATCAGGAATATTGAGCAACACGCTTCTGACAATGTGAATAAAATATTAGTAGGCAACAAAGCAGACATGGATGAGAGCAAGAGGGCTGTTCCCACGGCACGGGGTCAAGCACTAGCAGATGAGTATGGCATCAAGTTCTTTGAGACTAGTGCAAAAACAAACTTGAACGTTGAGCAGGTTTTCTTTAAACTTGGA
AGGGATATAAAGCAAAGGCTTGAAGAAAGTGAATCAAGGGTTGAGCCAAATACTATAAAACTAAACAAACCAGATCAAGCAAAAGGTCCAGAAAATGCTCCACAGAAATCGAATTGCTGCAGTTCTTGAAGTTGTATTGCCTTAGAAGGCTCAACCAATGGATCATTTTCTGGTTCATTCTTACAGAAGAAGGCGCCTTA
CTAATGAATTGTGTCTTATCAAGTTGCCAAGTATTCTGCTAGTTATGATAGTCTGAGAACAATGTGGATGATGGTCTAATTGAAAGGAATCATTCATGAGTTACCTATTCTTTTTTTAGATTAGTCTCCTGTGTGTTTTGTAGTGAATTCTTTGGAGGACTCGATCCTGTGAGTCAAATTTGGTGTGTAGCACACTATTT
GATGACCTGGACTCCTCTATAGAGGTTTTGTGAACTTGCGCCAGGCATTATTAAGTTTTTCCTGGGTGTGATCTGGGGCAGTCAAATCATATGTTAAAAATTGATTAGTTTCTCTCCATTGTCTGTTATGTGTGCCTGGTTCTGGGTAAGAGATTTTTTTGCCCAACAACGAAATTGATATATGTGCATGCCTTTTTTTA
TTAAGATTATGGAAGTTCAATCAGAAGATTGTTAAAGTTGAA

>TRINITY_DN41257_c0_g4_i1 from sample A6 / Example unspliced isoform:

AGACATGGATGAGAGCAAGAGGgtgggtttaccatttttctcggagtgttttatcgatgattctttcttccttctttgttcaactttcttattctattcgagattgttatcacattttctcagaactaaatctcattattttcaacttattacttgtgtggtcatgattagGCTGTTCCCACGGCACGGGGTCAAGCACT
AGCAGATGAGTATGGCATCAAGTTCTTTGAGACTAGTGCAAAAACAAACTTGAACGTTGAGCAGGTTTTCTTTAAACTTGGAAGGGATATAAAGCAAAGGCTTGAAGAAAGTGAATCAAGGGTTGAGCCAAATACTATAAAACTAAACAAACCAGATCAAGCAAAAGGTCCAGAAAATGCTCCACAGAAATCGAATTGCT
GCAGTTCTTGAAGTTGTATTGCCTTAGAAGGCTCAACCAATGGATCATTTTCTGGTTCATTCTTACAGAAGAAGGCGCCTTACTAATGAATTGTGTCTTATCAAGTTGCCAAGTATTCTGCTAGTTATGATAGTCTGAGAACAATGTGGATGATGGTCTAATTGAAAGGAATCATTCATGAGTTACCTATTCTTTTTTTA
GATTAGTCTCCTGTGTGTTTTGTAGTGAATTCTTTGGAGGACTCGATCCTGTGAGTCAAATTTGGTGTGTAGCACACTATTTGATGACCTGGACTCCTCTATAGAGGTTTTGTGAACTTGCGCCAGGCATTATTAAGTTTTTCCTGGGTGTGATCTGGGGCAGTCAAATCATATGTTAAAAATTGATTAGTTTCTCTCCA
TTGTCTGTTATGTGTGCCTGGTTCTGGGTAAGAGATTTTTTTGCCCAACAACGAAATTGATATATGTGCATGCCTTTTTTTATTAAGATTATGGAAGTTCAATCAGAAGATTGTTAAAGTTGAA