sp|Q6ZD95|SPO12_ORYSJ ----> Meiotic recombination protein SPO11-2
Intron 1 GTAAGCCATT ... TATATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.8 | 56 | 17 | 24 |
| A2 | 24.64 | 26 | 5 | 12 |
| A3 | 23.68 | 29 | 10 | 8 |
| A4 | 37.04 | 17 | 8 | 12 |
| A5 | 38.1 | 13 | 8 | 8 |
| A6 | 20.28 | 57 | 5 | 24 |
| A7 | 22.79 | 83 | 17 | 32 |
| A8 | 24.74 | 73 | 28 | 20 |
| A9 | 19.58 | 76 | 15 | 22 |
| A10 | 23.56 | 84.3 | 10 | 42 |
>TRINITY_DN118265_c6_g2_i1 from sample A1 / Example spliced isoformAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGACCGAGATTCACAGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTG
TTTTGGTGATGTTAGTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACC
AAGTCCAAGTTAATTGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAA
TGGGTCTTTGAGACAGATTCTCGATATATTATTTTGGTGGAAAAAGTACAGACTATTGCTTATGACTAATTTGAGAAAATTCTCCTCAACTGATGCAGGAGTTTTTGTTTCATTATTAGACCA
>TRINITY_DN118265_c6_g2_i7 from sample A1 / Example unspliced isoform:AAAAAGTATTTTTTCAAAAAAAAAAGAATGTCAGTTTTGTATCTAATGGTAGATTTGATATCCAAGACCGAGATTCACAGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTGTTTTGGTGATGTTAGTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCA
TTTGTTAGAGgtaagccatttttgttccctctgtttcctaaataatcctttgacatattgaaaagatgttatctgtgactatattgccatcccgctttaaagggacaaaaactatctcacacatcgcctggatgctggacttatatttcagTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCA
AGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAATTGTGCAATACAAGGTGTGCATATTTTTCCATAACATGTGCTTATGACGCTATTTTTCTTATACAATTAGAATTGCGTTAATACAATTAATTTCCCTAAAAT
Intron 2 GTTTGCAGAA ... TAGCTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.17 | 25 | 51 | 31.8 |
| A2 | 70.25 | 13.3 | 46 | 16.3 |
| A3 | 76.69 | 11.7 | 49 | 27.2 |
| A4 | 56.28 | 20.7 | 40 | 13 |
| A5 | 83.09 | 2.7 | 19 | 7.2 |
| A6 | 63.82 | 44.5 | 86.8 | 64.7 |
| A7 | 61.23 | 44.7 | 78 | 60.8 |
| A8 | 62.15 | 51.5 | 86 | 77.8 |
| A9 | 64.4 | 51 | 120 | 59.7 |
| A10 | 68.19 | 47.7 | 136 | 59.7 |
>TRINITY_DN101191_c0_g1_i6 from sample A4 / Example spliced isoformGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACAG
TTAACGCTCTTTCACTCGGATCAACAACTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGG
TTGATTGGAATCCATCTGGCTTGGCAATTG
>TRINITY_DN101191_c0_g1_i3 from sample A4 / Example unspliced isoform:GAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACAG
TTAACGCTCTTTCACTCGGATCAACAACTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGgtttgcagaacagcaagcaatacaaatttacgtcaagggtgttttggtgatgttag
ttcaatcttcctttcttatatcacatacaataggtcattcatgaaatcaaatatggggaaggcatttgttagagtttggaaggttttggagctttgcttccaacttttggttcatggaaagcaagcaactcaacgtgaagttttttataagttgctttgtgactctccaaaatacttcactaaccaagtccaagttaatt
gtgcaatacaagatgtcattgctttggttcggtgtagtcgccatagccttggaatcatggcttctagccgaggagcaatagctgggagactactcatacatgaaccgaatggagatgcagtagactgtactcttctgggacctacaggtcatattatcaatggcaacttgaatttgttgcaacaatgggtctttgagaca
gattctcgatatattattttggtggaaaaagatgccattttccaaagattggctgaagatcggatctataaccacattccatgcatattgatcactgccaaaggctaccctgatttagcttcaagGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCATCTGG
CTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAATCAAA
GCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATTG
TGGCTAGCTTTCCAACAGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGGATAACATTATTTGCATGAAAACAGCATATTTGCAAAAACAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAAGA
Intron 3 GTATATTGGC ... TCTCCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 12 | 0 | 5 |
| A2 | 23.08 | 10 | 0 | 3 |
| A3 | 27.78 | 13 | 0 | 5 |
| A4 | 43.75 | 9 | 0 | 7 |
| A5 | 31.25 | 11 | 0 | 5 |
| A6 | 20.99 | 90.3 | 0 | 24 |
| A7 | 17.54 | 94 | 0 | 20 |
| A8 | 23.39 | 131 | 0 | 40 |
| A9 | 18.88 | 116 | 0 | 27 |
| A10 | 28.57 | 70 | 1 | 28 |
>TRINITY_DN44945_c0_g1_i1 from sample A10 / Example spliced isoformATCAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCA
ACAGTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTT
TTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAATTGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGG
GAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGAGACAGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCA
TATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTA
GGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAATCAAAGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTT
TTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATAT
TTGCAAAAAGAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAAGACCCTTATTTTTTTAGTGTATATTTTGGTCTTCTATCTAGTATCTTGTTTGTCCC
>TRINITY_DN44945_c0_g1_i3 from sample A10 / Example unspliced isoform:GCATCTAAATATGgtatattggcatttgagtttcaatttcgttagtcattgagaatctttagttatttgttcaggaccgactggaatatttttaattctgtatacatgacttattcctgttttctccttcagTTTGTGATGTTAAGTGGCTTGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTT
AAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAG
Intron 4 GTTTGCAGAA ... TAGCTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.07 | 26.6 | 51 | 33.2 |
| A2 | 69.86 | 13.8 | 46 | 17.2 |
| A3 | 75.27 | 12 | 49 | 23.4 |
| A4 | 53.65 | 21 | 40 | 8.4 |
| A5 | 82.79 | 2.8 | 19 | 7.8 |
| A6 | 61.25 | 48 | 87 | 59.8 |
| A7 | 59.85 | 46.4 | 78 | 57.6 |
| A8 | 61.25 | 55.4 | 86 | 84 |
| A9 | 63.55 | 53.4 | 120 | 60.6 |
| A10 | 67.04 | 51.2 | 136 | 62.8 |
>TRINITY_DN40309_c0_g1_i11 from sample A6 / Example spliced isoformATCAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCA
ACAGTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCA
TTGGTTGATTGGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTA
TTCAAAGATGCTGCAGAATCAAAGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATG
AAAACAAAATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAAGACCCTTATTTTTTTAGTGTATA
TTTTGGTCTTCTATCTAGTATCTTGTTTGTCC
>TRINITY_DN40309_c0_g1_i10 from sample A6 / Example unspliced isoform:ATCAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCA
ACAGTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGgtttgcagaacagcaagcaatacaaatttacgtcaagggtgttttggtgatg
ttagttcaatcttcctttcttatatcacatacaataggtcattcatgaaatcaaatatggggaaggcatttgttagagtttggaaggttttggagctttgcttccaacttttggttcatggaaagcaagcaactcaacgtgaagttttttataagttgctttgtgactctccaaaatacttcactaaccaagtccaagtt
aattgtgcaatacaagatgtcattgctttggttcggtgtagtcgccatagccttggaatcatggcttctagccgaggagcaatagctgggagactactcatacatgaaccgaatggagatgcagtagactgtactcttctgggacctacaggtcatattatcaatggcaacttgaatttgttgcaacaatgggtctttga
gacagattctcgatatattattttggtggaaaaagtacagactattgcttatgactaatttgagaaaattctcctcaactgatgcaggagtttttgtttcattattagaccagatattcatagtttttttctatcaaattttgttaacctgtgcacttgcaaacggagaaaccgtaggatgccattttccaaagattggc
tgaagatcggatctataaccacattccatgcatattgatcactgccaaaggctaccctgatttagcttcaagGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAG
CATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAATCAAAGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAA
ATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATA
TGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAAGACCCTTATTTTTTTAGTGTATATTTTGGTCTTCTATCTAGTATCTTGTTTGTCC
Intron 5 GTACAGACTA ... GAAACCGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.41 | 27 | 15 | 14.6 |
| A2 | 47.16 | 10 | 9 | 8.9 |
| A3 | 22.86 | 32 | 14 | 5 |
| A4 | 35.23 | 17 | 13 | 5.6 |
| A5 | 22.92 | 7 | 2 | 2.2 |
| A6 | 23.67 | 60 | 19 | 18.5 |
| A7 | 28.43 | 74 | 29 | 29.9 |
| A8 | 36.43 | 76 | 30 | 57.4 |
| A9 | 26.36 | 69 | 31 | 18.7 |
| A10 | 22.69 | 36 | 11 | 10.3 |
>TRINITY_DN109168_c0_g1_i6 from sample A2 / Example spliced isoformAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGACCGAGATTCACAGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTG
TTTTGGTGATGTTAGTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACC
AAGTCCAAGTTAATTGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAA
TGGGTCTTTGAGACAGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGA
TTGGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGA
TGCTGCAGAATCAAAGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAA
ATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAA
>TRINITY_DN109168_c0_g1_i9 from sample A2 / Example unspliced isoform:AGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGACCGAGATTCACAGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTG
TTTTGGTGATGTTAGTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACC
AAGTCCAAGTTAATTGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAA
TGGGTCTTTGAGACAGATTCTCGATATATTATTTTGGTGGAAAAAgtacagactattgcttatgactaatttgagaaaattctcctcaactgatgcaggagtttttgtttcattattagaccagatattcatagtttttttctatcaaattttgttaacctgtgcacttgcaaacggagaaaccgtagGATGCCATTTTC
CAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTAATTCTCAATTGCATTGCATACATGGTTTTCATTTGTTGTTACGCA
Intron 6 GTATGTGGCA ... TGTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.41 | 18 | 8 | 7 |
| A2 | 20 | 14 | 7 | 0 |
| A3 | 35.71 | 9 | 6 | 4 |
| A4 | 35.48 | 10 | 5 | 6 |
| A5 | 28.57 | 5 | 4 | 0 |
| A6 | 23.87 | 118 | 29 | 45 |
| A7 | 26.67 | 77 | 31 | 25 |
| A8 | 27.79 | 178 | 62 | 75 |
| A9 | 34.22 | 99 | 53 | 50 |
| A10 | 28.63 | 81 | 38 | 27 |
>TRINITY_DN118265_c6_g2_i8 from sample A1 / Example spliced isoformAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTGTTTTGGTGATGTTA
GTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAAT
TGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGAGAC
AGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCATCTG
GCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAATCAA
AGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATT
GTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAAT
>TRINITY_DN118265_c6_g2_i11 from sample A1 / Example unspliced isoform:AGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTGTTTTGGTGATGTTA
GTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAAT
TGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGAGAC
AGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGTAAAGTTTTC
TAACTAAATTCCTGAATGGAACCTTCTACTATCAAGGCCAGGCAGCTCAGAATGTCTTGTTTTTGTTTTGAAGGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTG
CCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGgtatgtggcatttggcatgctctttagtaagaaacactgaacagtcattcaaggaaagcagaaagttgattgatgatatatgtatttcagAATCAAAGCAAGTACAAGGAGGAGCTTTTACA
CATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTG
AAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAAT
Intron 7 GTTTGCAGAA ... CATACAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.51 | 33 | 51 | 46 |
| A2 | 75.24 | 13 | 46 | 33 |
| A3 | 72.73 | 15 | 49 | 31 |
| A4 | 60 | 20 | 40 | 20 |
| A5 | 75 | 5 | 19 | 11 |
| A6 | 62.73 | 41 | 87 | 51 |
| A7 | 62.45 | 43 | 78 | 65 |
| A8 | 66.38 | 39 | 86 | 68 |
| A9 | 62.18 | 59 | 120 | 74 |
| A10 | 68.42 | 48 | 136 | 72 |
>TRINITY_DN44945_c0_g1_i1 from sample A10 / Example spliced isoformATCAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCA
ACAGTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTT
TTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAATTGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGG
GAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGAGACAGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCA
TATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTA
GGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAATCAAAGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTT
TTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATAT
TTGCAAAAAGAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAAGACCCTTATTTTTTTAGTGTATATTTTGGTCTTCTATCTAGTATCTTGTTTGTCCC
>TRINITY_DN44945_c0_g1_i7 from sample A10 / Example unspliced isoform:ATCAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCA
ACAGTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGgtttgcagaacagcaagcaatacaaatttacgtcaagggtgttttggtgatg
ttagttcaatcttcctttcttatatcacatacaatagGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTT
AATTGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGA
GACAGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCAT
CTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAAT
CAAAGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGT
ATTGTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAATTTATAAAATTAGAGTGAATGTAAATCTTTCCATCATTGTAGAATTGATTCCAAAAAGACCCTTATTTTTTTAGTGTATATTTTGGTCTTCTATCTAGT
ATCTTGTTTGTCCC
Intron 8 GTAAAGTTTT ... TGTTTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.11 | 27.8 | 7.7 | 2 |
| A2 | 18.97 | 13.8 | 2.9 | 3 |
| A3 | 21.82 | 18.2 | 6.1 | 4.7 |
| A4 | 30.24 | 11.6 | 1.7 | 5 |
| A5 | 34.99 | 8.3 | 2.2 | 4.4 |
| A6 | 27.35 | 76.6 | 6.8 | 28.7 |
| A7 | 21.37 | 80.6 | 11.1 | 21.7 |
| A8 | 20.75 | 84.8 | 9 | 22 |
| A9 | 30.59 | 65.9 | 12 | 28.7 |
| A10 | 18.67 | 71.6 | 9.5 | 16 |
>TRINITY_DN118265_c6_g2_i8 from sample A1 / Example spliced isoformAGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTGTTTTGGTGATGTTA
GTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAAT
TGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGAGAC
AGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGGAATCCATCTG
GCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTGCCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGAATCAA
AGCAAGTACAAGGAGGAGCTTTTACACATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATT
GTGGCTAGCTTTCCAACGGGCATTTGAAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAAT
>TRINITY_DN118265_c6_g2_i11 from sample A1 / Example unspliced isoform:AGAAATACCTATCGCAAATACTTTAAAACTCGAACTCACCTGATTTCCATGATTCTAAGTATCAAATGCGTAGAATATTTTGGACCCTTATAGAAGGTTCTTCTACTGTTGCATGTTGCAGAGTAAGCTCAACGGTAATAACTGTCCATTTTCGAAAGCAATTCGCGCTGACTTTCTTGCATGAAAATGGCGGGGCAACA
GTTAACGCTCTTTCACTCGGATCAACAGCTTTGCCATGCGGAAGTTTTGCCGCCTCCGGAGGTTCAAGCAAGAATTGAAGTCATAGTCTTACGATTCTTAAAATATTTAGCTTCTCCCAATCCATCAGTTTGCGATCTTTCATTGGTTTGCAGAACAGCAAGCAATACAAATTTACGTCAAGGGTGTTTTGGTGATGTTA
GTTCAATCTTCCTTTCTTATATCACATACAATAGGTCATTCATGAAATCAAATATGGGGAAGGCATTTGTTAGAGTTTGGAAGGTTTTGGAGCTTTGCTTCCAACTTTTGGTTCATGGAAAGCAAGCAACTCAACGTGAAGTTTTTTATAAGTTGCTTTGTGACTCTCCAAAATACTTCACTAACCAAGTCCAAGTTAAT
TGTGCAATACAAGATGTCATTGCTTTGGTTCGGTGTAGTCGCCATAGCCTTGGAATCATGGCTTCTAGCCGAGGAGCAATAGCTGGGAGACTACTCATACATGAACCGAATGGAGATGCAGTAGACTGTACTCTTCTGGGACCTACAGGTCATATTATCAATGGCAACTTGAATTTGTTGCAACAATGGGTCTTTGAGAC
AGATTCTCGATATATTATTTTGGTGGAAAAAGATGCCATTTTCCAAAGATTGGCTGAAGATCGGATCTATAACCACATTCCATGCATATTGATCACTGCCAAAGGCTACCCTGATTTAGCTTCAAGGTTTCTTCTCCATCGTCTTAGCAGGAATTTTCCTTGTCTTCGTATTGTGGCATTGGTTGATTGgtaaagttttc
taactaaattcctgaatggaaccttctactatcaaggccaggcagctcagaatgtcttgtttttgttttgaagGAATCCATCTGGCTTGGCAATTGTATGCACGTATAAGTTTGGAAGCATAGCCATGGGGTTAGAAGCATCTAAATATGTTTGTGATGTTAAGTGGCTAGGTTTAAGAGGGATTGACCTCCAACTTGTG
CCAGAACATGCACGTCTTAAACTCAAGCCACGAGATCATCAATTGGCCCAAAGCTTGCTTTATTCAAAGATGCTGCAGGTATGTGGCATTTGGCATGCTCTTTAGTAAGAAACACTGAACAGTCATTCAAGGAAAGCAGAAAGTTGATTGATGATATATGTATTTCAGAATCAAAGCAAGTACAAGGAGGAGCTTTTACA
CATGGTTCAAGTTGGCTGTAGGGTTGAAATAGAAGCACTATATGTACATGGATATGATTTTTTGGGGCGGTATGTTGCTAGGAAGATTGTACAAAATGATTACATTTAATTGACTTTAGATTAGTGGTTCAGGAGAATATTTTAGTTAAATGAAAACAAAATGTATCTTGTATTGTGGCTAGCTTTCCAACGGGCATTTG
AAGTTTCATTTCCATATGTAGTTACATATGAATAACATTATTTGCATGAAAACAGCATATTTGCAAAAAGAAT