sp|Q0WQ75|VPS51_ARATH ----> Vacuolar protein sorting-associated protein 51 homolog
Intron 1 GTAGGCAAAA ... CAATTCGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.67 | 63 | 106 | 135 |
| A2 | 66.27 | 57 | 91 | 133 |
| A3 | 68.63 | 56 | 102 | 143 |
| A4 | 63.25 | 61 | 93 | 117 |
| A5 | 69.11 | 19 | 42 | 43 |
| A6 | 80.25 | 8 | 30 | 35 |
| A7 | 65.73 | 55 | 69 | 142 |
| A8 | 57.97 | 29 | 31 | 49 |
| A9 | 67.79 | 43 | 86 | 95 |
| A10 | 75.43 | 36 | 81 | 140 |
>TRINITY_DN105298_c5_g2_i7 from sample A4 / Example spliced isoformGCAACATGAATCCACAATTACTCTGTGATATATCTATGGTCTGACGCGACCCGCGTTCGACTCTTTCGAACCCACATTTACAGTTGCTTTACATTTGGGTGCACTGGAGTCGCGCATTGGAGTCTGGGCGAGGGGAGGAAGCACCCGGGGTTGCAGATTTAGAGTCGGAGATTCGAAAAATGGGAGAGGACATGTCTCTG
TCTTTTGACGAGAAAGCCAAAAGAACCAGAGATCTGCTCACAAGTTTTTATGGCGATAATTCTTCTAGTCCCGATGGACTCACCCGGAGTGACAGCTTGCTTACGATTAACACTCTCGCCTTCGATCCTGCTAGATACATGAATAACCTGAATGAAGGATAATGTTGTTGGCATGGAGACCAATATGGAACAGCTTCTGG
AGAAGATTACATCTGTTCAGTCAAAAAGTGACACTGTTAATGCATCTCTATGTGAGAGAAGAGAATGCATAGAAAACCTGAATCGTACTCGCAGTCTTCTTCGTAAAGTGCAGTTCATATATGACCTTCCTTCACGGCTGACGAAGTGTATCAAATCTGAAGCATATGCAGATGCAGTGAAATATTATGTAGGGGCTTTG
CCAGTTTTGAAGGCATATGGACAATCATCTTTTGAGAAATGCAGAAAGGAATCTGAGGAAGCTATTGGTACAGTCATAAAGCACCTTCAGGCTCGCCTGTTCACGGATTCCGAACCAGTCGAAGCCAGGGCAGAAGCAGTTGTATTACTTAAGCAACTAGGTTTTCCGGTAGACAATCTGAAGACAAAGGTCTTGGAGGC
GAAGTTGGAACATTTTCTCTCAGAGCTACAGGCTGAAGCCCGACAAGAAAATCATGCTGTTACAGATTCAGACAAGTCTTCTGAGCACATGTCAGATTCAGTGTCAAAACAACCAGTGGAAAATTCAAAGGACTCAATTGGCGAATTTGCTAAAATGGTTACTGCTTATCGCATCATTTTTCCCAATTCCGAAAAGCGGT
TAACTGAAGTTGCAATAGACCTCTTTAACAAACATTTTGCATGCCTGCGGCAACCTGAGAAAGGAAATGCTTCTGCTGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACAT
GTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGCATTCTTGCAATACTTCAGTCACAGCAGAGGGAGAGAGAAAGTCCAGAGAAAATGAAACCACTGCAAGTGGCTTTGGATAGTGGAAAGAATGCTTTACTTCAAGGAAGCCTGGATGTCTTAATGGATCTTCGACAGCTTCTTGATGACAATTTGGAGTT
ACTGGTTAAGTTGAGGGATGTGTATATTGACTGGGTTCAAGGAGGTTTTCAGGACTTTTTTACATCCCTGGAAGATTTATTTCTCTCGGTTTCGCGGGGAACCTGTGATGGAAAACTGCCTCTCACAGAGAAGTTGCAGATAGATAAGGTTTCAACAGGACTTGTGCTTGTGCTGGCCCAGCTATCTGTATTTATTGAGC
ACACAGCAATTCCTAATATTACAGAGGAGATTGCTATTGGTTTCTCTGGAGGTGGTGCTAGAAGTTATGAGGATGGACCTGCATTTATACCTGCAGAGATTTGTCGAATGTTTCGGTCAGTTGGTGACAATCTTTTACATAGTTATATTAATATGCAAACGTGCAAGCTTTCATTGCTGGTCAAGAAAAGTGTAGCAACA
CCAAATTGGCTTAAGTATAAGGAGCCTCGGGATGTTCGCATGTTTGTGGATTTGCTACTTCAAGAGTTGAAAATAATGGAGGGGGAAGTGCAACAGGTTCTAAATCAAGGATCAACAAGAAAACATCGACGTTCTGATAGTACAGGAAGCACCAACTCGTCTCGTAGTAATCAAATACGAGATGATAGGAGTAGCCGTTC
AAACAAACATCGTGCTCGTAGTCGCTTGCTGGAAAGTCACGTGGCCAAGCTGTTCAAACAAAAAGTTGAAATTTTTACGAAACTTGAGTATACACAGGAATCTGTAATTTCAACCATAGTGAAGATGTGCTTAAAGAGCTTTCAAGAGTATGTTCGACTTGAAACATTTAGCAGAAGTGGATTCCAGCAGATTCATTTAG
ACACTCAGTTTTTGAGGGAGCCATTAAAGGAAGTCGTTGAAGATGAAGCTGTTATTGATTTTTTGTTGGACGAGGTCTGTGTGGCTGCTGCTGAACGGTGTTTGGACCCAATTCCTCTTGAACCTGCCATTTTGGATAAGCTTATTCATGCAAAGATAGCCAAAAATTCAGAGAATATTGTGAGTTCCTAGTATTTAATT
TAAATAAGTACCACCTATTTCAAGGTGTCTTAAGTAGAGCATTGCCAGCGGCTCCGGATCCTTAGATTCAATGTCCTTCCTACTCTGACTTCAAATTGTGGTTGTATGAAGCTTCCCTTCCAATATCTGTAATAGGTGGATGCTGTTACAAATGTATGTTATGAACGTCAACCACAATGTATGGACTTTTTATTTCTTCA
GTTTGAAAATTTGTGCTGCCATTTTTTCTATTTCACAGGCATTGATGAGCTTTTTCTCTACCAAAAATTTTCTTAGTGTGTTCAGTTAGGAGGGTATCATCAGATCAATGATAAATGAAATATGATATCAAAATTTGGTTTAGAACCTGACATAATATGGAACAGCAG
>TRINITY_DN105298_c5_g2_i3 from sample A4 / Example unspliced isoform:GCAACATGAATCCACAATTACTCTGTGATATATCTATGGTCTGACGCGACCCGCGTTCGACTCTTTCGAACCCACATTTACAGTTGCTTTACATTTGGGTGCACTGGAGTCGCGCATTGGAGTCTGGGCGAGGGGAGGAAGCACCCGGGGTTGCAGATTTAGAGTCGGAGATTCGAAAAATGGGAGAGGACATGTCTCTG
TCTTTTGACGAGAAAGCCAAAAGAACCAGAGATCTGCTCACAAGTTTTTATGGCGATAATTCTTCTAGTCCCGATGGACTCACCCGGAGTGACAGCTTGCTTACGATTAACACTCTCGCCTTCGATCCTGCTAGATACATGAATAACCTGgtaggcaaaaccaatgtggaaggcttgcttcaaagacatgttgagatggc
agctgaaattacgaatttggatagtgatctgcagatgttggtttatgagaattacaataagtttatcagtgctacagacacaattcgaagAATGAAGGATAATGTTGTTGGCATGGAGACCAATATGGAACAGCTTCTGGAGAAGATTACATCTGTTCAGTCAAAAAGTGACACTGTTAATGCATCTCTATGTGAGAGAA
GAGAATGCATAGAAAACCTGAATCGTACTCGCAGTCTTCTTCGTAAAGTGCAGTTCATATATGACCTTCCTTCACGGCTGACGAAGTGTATCAAATCTGAAGCATATGCAGATGCAGTGAAATATTATGTAGGGGCTTTGCCAGTTTTGAAGGCATATGGACAATCATCTTTTGAGAAATGCAGAAAGGAATCTGAGGAA
GCTATTGGTACAGTCATAAAGCACCTTCAGGCTCGCCTGTTCACGGATTCCGAACCAGTCGAAGCCAGGGCAGAAGCAGTTGTATTACTTAAGCAACTAGGTTTTCCGGTAGACAATCTGAAGACAAAGGTCTTGGAGGCGAAGTTGGAACATTTTCTCTCAGAGCTACAGGCTGAAGCCCGACAAGAAAATCATGCTGT
TACAGATTCAGACAAGTCTTCTGAGCACATGTCAGATTCAGTGTCAAAACAACCAGTGGAAAATTCAAAGGACTCAATTGGCGAATTTGCTAAAATGGTTACTGCTTATCGCATCATTTTTCCCAATTCCGAAAAGCGGTTAACTGAAGTTGCAATAGACCTCTTTAACAAACATTTTGCATGCCTGCGGCAACCTGAGA
AAGGAAATGCTTCTGCTGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACATGTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGCATTCTTGCAATACTTCAG
TCACAGCAGAGGGAGAGAGAAAGTCCAGAGAAAATGAAACCACTGCAAGTGGCTTTGGATAGTGGAAAGAATGCTTTACTTCAAGGAAGCCTGGATGTCTTAATGGATCTTCGACAGCTTCTTGATGACAATTTGGAGTTACTGGTTAAGTTGAGGGATGTGTATATTGACTGGGTTCAAGGAGGTTTTCAGGACTTTTT
TACATCCCTGGAAGATTTATTTCTCTCGGTTTCGCGGGGAACCTGTGATGGAAAACTGCCTCTCACAGAGAAGTTGCAGATAGATAAGGTTTCAACAGGACTTGTGCTTGTGCTGGCCCAGCTATCTGTATTTATTGAGCACACAGCAATTCCTAATATTACAGAGGAGATTGCTATTGGTTTCTCTGGAGGTGGTGCTA
GAAGTTATGAGGATGGACCTGCATTTATACCTGCAGAGATTTGTCGAATGTTTCGGTCAGTTGGTGACAATCTTTTACATAGTTATATTAATATGCAAACGTGCAAGCTTTCATTGCTGGTCAAGAAAAGTGTAGCAACACCAAATTGGCTTAAGTATAAGGAGCCTCGGGATGTTCGCATGTTTGTGGATTTGCTACTT
CAAGAGTTGAAAATAATGGAGGGGGAAGTGCAACAGGTTCTAAATCAAGGATCAACAAGAAAACATCGACGTTCTGATAGTACAGGAAGCACCAACTCGTCTCGTAGTAATCAAATACGAGATGATAGGAGTAGCCGTTCAAACAAACATCGTGCTCGTAGTCGCTTGCTGGAAAGTCACGTGGCCAAGCTGTTCAAACA
AAAAGTTGAAATTTTTACGAAACTTGAGTATACACAGGAATCTGTAATTTCAACCATAGTGAAGATGTGCTTAAAGAGCTTTCAAGAGTATGTTCGACTTGAAACATTTAGCAGAAGTGGATTCCAGCAGATTCATTTAGACACTCAGTTTTTGAGGGAGCCATTAAAGGAAGTCGTTGAAGATGAAGCTGTTATTGATT
TTTTGTTGGACGAGGTCTGTGTGGCTGCTGCTGAACGGTGTTTGGACCCAATTCCTCTTGAACCTGCCATTTTGGATAAGCTTATTCATGCAAAGATAGCCAAAAATTCAGAGAATATTGTGAGTTCCTAGTATTTAATTTAAATAAGTACCACCTATTTCAAGGTGTCTTAAGTAGAGCATTGCCAGCGGCTCCGGATC
CTTAGATTCAATGTCCTTCCTACTCTGACTTCAAATTGTGGTTGTATGAAGCTTCCCTTCCAATATCTGTAATAGGTGGATGCTGTTACAAATGTATGTTATGAACGTCAACCACAATGTATGGACTTTTTATTTCTTCAGTTTGAAAATTTGTGCTGCCATTTTTTCTATTTCACAGGCATTGATGAGCTTTTTCTCTA
CCAAAAATTTTCTTAGTGTGTTCAGTTAGGAGGGTATCATCAGATCAATGATAAATGAAATATGATATCAAAATTTGGTTTAGAACCTGACATAATATGGAACAGCAG
Intron 2 GTATGAAACT ... AATTTTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.88 | 89 | 3 | 12 |
| A2 | 8.16 | 45 | 0 | 4 |
| A3 | 10.45 | 60 | 1 | 7 |
| A4 | 23.33 | 69 | 1 | 21 |
| A5 | 9.09 | 30 | 0 | 3 |
| A6 | 14.89 | 40 | 0 | 7 |
| A7 | 23.3 | 79 | 0 | 24 |
| A8 | 15.91 | 37 | 0 | 7 |
| A9 | 18.97 | 47 | 0 | 11 |
| A10 | 8.2 | 56 | 0 | 5 |
>TRINITY_DN105298_c5_g2_i6 from sample A4 / Example spliced isoformGCAACATGAATCCACAATTACTCTGTGATATATCTATGGTCTGACGCGACCCGCGTTCGACTCTTTCGAACCCACATTTACAGTTGCTTTACATTTGGGTGCACTGGAGTCGCGCATTGGAGTCTGGGCGAGGGGAGGAAGCACCCGGGGTTGCAGATTTAGAGTCGGAGATTCGAAAAATGGGAGAGGACATGTCTCTG
TCTTTTGACGAGAAAGCCAAAAGAACCAGAGATCTGCTCACAAGTTTTTATGGCGATAATTCTTCTAGTCCCGATGGACTCACCCGGAGTGACAGCTTGCTTACGATTAACACTCTCGCCTTCGATCCTGCTAGATACATGAATAACCTGGTAGGCAAAACCAATGTGGAAGGCTTGCTTCAAAGACATGTTGAGATGGC
AGCTGAAATTACGAATTTGGATAGTGATCTGCAGATGTTGGTTTATGAGAATTACAATAAGTTTATCAGTGCTACAGACACAATTCGAAGAATGAAGGATAATGTTGTTGGCATGGAGACCAATATGGAACAGCTTCTGGAGAAGATTACATCTGTTCAGTCAAAAAGTGACACTGTTAATGCATCTCTATGTGAGAGAA
GAGAATGCATAGAAAACCTGAATCGTACTCGCAGTCTTCTTCGTAAAGTGCAGTTCATATATGACCTTCCTTCACGGCTGACGAAGTGTATCAAATCTGAAGCATATGCAGATGCAGTGAAATATTATGTAGGGGCTTTGCCAGTTTTGAAGGCATATGGACAATCATCTTTTGAGAAATGCAGAAAGGAATCTGAGGAA
GCTATTGGTACAGTCATAAAGCACCTTCAGGCTCGCCTGTTCACGGATTCCGAACCAGTCGAAGCCAGGGCAGAAGCAGTTGTATTACTTAAGCAACTAGGTTTTCCGGTAGACAATCTGAAGACAAAGGTCTTGGAGGCGAAGTTGGAACATTTTCTCTCAGAGCTACAGGCTGAAGCCCGACAAGAAAATCATGCTGT
TACAGATTCAGACAAGTCTTCTGAGCACATGTCAGATTCAGTGTCAAAACAACCAGTGGAAAATTCAAAGGACTCAATTGGCGAATTTGCTAAAATGGTTACTGCTTATCGCATCATTTTTCCCAATTCCGAAAAGCGGTTAACTGAAGTTGCAATAGACCTCTTTAACAAACATTTTGCATGCCTGCGGCAACCTGAGA
AAGGAAATGCTTCTGCTGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACATGTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGCATTCTTGCAATACTTCAG
TCACAGCAGAGGGAGAGAGAAAGTCCAGAGAAAATGAAACCACTGCAAGTGGCTTTGGATAGTGGAAAGAATGCTTTACTTCAAGGAAGCCTGGATGTCTTAATGGATCTTCGACAGCTTCTTGATGACAATTTGGAGTTACTGGTTAAGTTGAGGGATGTGTATATTGACTGGGTTCAAGGAGGTTTTCAGGACTTTTT
TACATCCCTGGAAGATTTATTTCTCTCGGTTTCGCGGGGAACCTGTGATGGAAAACTGCCTCTCACAGAGAAGTTGCAGATAGATAAGGTTTCAACAGGACTTGTGCTTGTGCTGGCCCAGCTATCTGTATTTATTGAGCACACAGCAATTCCTAATATTACAGAGGTAAATTGTCTTAAAAGATTCTTTATTGATGATT
TTGTAAGTTTTCCCCTCTTGTTCTGTAATCTCTTCTGGCACATAATGCT
>TRINITY_DN105298_c5_g2_i8 from sample A4 / Example unspliced isoform:GTTGCAATAGACCTCTTTAACAAgtatgaaacttttaacctggtcctgccattcaaatttttgtcaatgaatttttgtcctcatttctgagatgctgtactttaatctcaagtaaattgtatttagctaatatgttaaatatttgctaatcatgactaatttctttgattctttgaattttgaagACATTTTGCATGCCT
GCGGCAACCTGAGAAAGGAAATGCTTCTGCTGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACATGTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGTGCAG
AGTGCTAATCTGTGTCTTTTTGTGATCTTTTTATTTGAAACTAGAGATCTTTATCATCAAAGAGAATTAAGTTGGAAATTTCCCTCTGCATATGTCGTTGATAAATTTGATCAATTGAAATGGAGACATATTTTTAACATGGCTAATTTGAAAGCGCACCTTATCTCAGCATTATGCTTCTGTGTTGGGGATGCCATAAG
AGACTCAGATGTATCATGTCTGCTGCACTAAATGGTCCCTTGCATTTCACATTAGATGTAAATAAGATGGTCATGTAAGTGACATTGATCCTGCTTAGTATTATTGATCTGTGTATTCTAGCAGTAATGCCACCTTGTATTTATTGATGAGGGATAAGTTATGATAAAACACATTCAAGTAAATACAAGTGAACTTTTAC
ATTAAATTGATTCAGAGAAGCAGTCATTTCACTCATGAAGATTTTTGGAGGAGAGAAAAGTATAAACTGTTCCATTTATGTTCACAGTTAATCACTGGATCTTCTTAACATTCATTAAAGTGTTACCAACCGCGGCCGATTTATCGCGATTTTTCTCCAGTCCCGATTTTTTAACAAAAAA
Intron 3 GTAGAGTATC ... CTATGTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.09 | 116 | 0 | 31 |
| A2 | 26.5 | 86 | 0 | 31 |
| A3 | 22.76 | 95 | 0 | 28 |
| A4 | 29.1 | 95 | 0 | 39 |
| A5 | 34.43 | 40 | 2 | 21 |
| A6 | 21.57 | 40 | 0 | 11 |
| A7 | 27.36 | 77 | 0 | 29 |
| A8 | 30.12 | 58 | 0 | 25 |
| A9 | 24.51 | 77 | 0 | 25 |
| A10 | 32.84 | 90 | 0 | 44 |
>TRINITY_DN108849_c5_g1_i6 from sample A5 / Example spliced isoformATTACTCTGTGATATATCTATGGTCTGACGCGACCCGCGTTCGACTCTTTCGAACCCACATTTACAGTTGCTTTACATTTGGGTGCACTGGAGTCGCGCATTGGAGTCTGGGCGAGGGGAGGAAGCACCCGGGGTTGCAGATTTTGAGTCGGAGATTCGAAAAATGGGAGAGGACATGTCTCTGTCTTTTGACGAGAAAG
CCAAAAGAACCAGAGATCTGCTCACAAGTTTTTATGGCGATAATTCTTCTAGTCCCGATGGACTCACCCGGAGTGACAGCTTGCTTACGATTAACACTCCCGCCTTCGATCCTGCTAGATACATGAATAACCTGGTAGGCAAAACCAATGTGGAAGGCTTGCTTCAAAGACATGTTGAGATGGCAGCTGAAATTACGAAT
TTGGATAGTGATCTGCAGATGTTGGTTTATGAGAATTACAATAAGTTTATCAGTGCTACAGACACAATTCGAAGAATGAAGGATAATGTTGTTGGCATGGAGACCAATATGGAACAGCTTCTGGAGAAGATTACATCTGTTCAGTCAAAAAGTGACACTGTTAATGCATCTCTATGTGAGAGAAGAGAATGCATAGAAAA
CCTGAATCGTACTCGCAGTCTTCTTCGTAAAGTGCAGTTCATATATGACCTTCCTTCACGGCTGACGAAGTGTATCAAATCTGAAGCATATGCAGATGCAGTGAAATATTATGTAGGGGCTTTGCCAGTTTTGAAGGCATATGGACAATCATCTTTTGAGAAATGCAGAAAGGAATCTGAGGAAGCTATTGGTACAGTCA
TAAAGCACCTTCAGGCTCGCCTGTTCACGGATTCCGAACCAGTCGAAGCCAGGGCAGAAGCAGTTGTATTACTTAAGCAACTAGGTTTTCCGGTAGACAATCTGAAGACAAAGGTCTTGGAGGCGAAGTTGGAACATTTTCTCTCAGAGCTACAGGCTGAAGCCCGACAAGAAAATCATGCTGTTACAGATTCAGACAAG
TCTTCTGAGCACATGTCGGATTCAGTGTCAAAACAACCAGTGGAAAATTCAAAGGACTCAATTGGCGAATTTGCTAAAATGGTTACTGCTTATCGCATCATTTTTCCCAATTCCGAAAAGCGGTTAACTGAAGTTGCAATAGACCTCTTTAACAAACATTTTGCATGCCTGCGGCAACCTGAGAAAGGAAATGCTTCTGC
TGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACATGTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGTGCAGAGTGCTAATCTGTGTCTTTTTGTGATCTTT
TTATTTGAAACTAGAGATCTTTATCATCAAAGAGAATTAAGTTGGAAATTTCCCTCTGCATATGTCGTTGATAAATTTGATCAATTGAAATGGAGACATATTTTTAACATGGCTAATTTGAAAGCGCACCTTATCTCAGCATTATGCTTCTGTGTTGGGGATGCCATAAGAGACTCAGATGTATCATGTCTGCTGCACTA
AATGGTCCCTTGCATTTCACATTAGATGTAAATAAGATGGTCATGTAAGTGACATTGATCCTGCTTAATATTATTGATCTGTGTATTCTAGCAGTAATGCCACCTTGTATTTATTGATGAGGGATAAGTTATGATAAAACACATTCAAGTAAATACAAGTGAACTTTTACATTAAATTGATTCAGAGAAGCAG
>TRINITY_DN108849_c5_g1_i7 from sample A5 / Example unspliced isoform:AGGGGCTTTGCCAGTTTTGAAGgtagagtatctattctcagtttgtgttggagaatatctatcagagttattctgcttgaattttactgagaagttttcctttactacttgtctcgggatctaacttaagctcaatcttctataatgtctgtgactctatgtttagGCATATGGACAATCATCTTTTGAGAAATGCAGAA
AGGAATCTGAGGAAGCTATTGGTACAGTCATAAAGCACCTTCAGGCTCGCCTGTTCACGGATTCCGAACCAGTCGAAGCCAGGGCAGAAGCAGTTGTATTACTTAAGCAACTAGGTTTTCCGGTAGACAATCTGAAGACAAAGGTCTTGGAGGCGAAGTTGGAACATTTTCTCTCAGAGCTACAGGCTGAAGCCCGACAA
GAAAATCATGCTGTTACAGATTCAGACAAGTCTTCTGAGCACATGTCGGATTCAGTGTCAAAACAACCAGTGGAAAATTCAAAGGACTCAATTGGCGAATTTGCTAAAATGGTTACTGCTTATCGCATCATTTTTCCCAATTCCGAAAAGCGGTTAACTGAAGTTGCAATAGACCTCTTTAACAAACATTTTGCATGCCT
GCGGCAACCTGAGAAAGGAAATGCTTCTGCTGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACATGTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGCATTC
TTGCAATACTTCAGTCACAGCAGAGGGAGAGAGAAAGTCCAGAGAAAATGAAACCACTGCAAGTGGCTTTGGATAGTGGAAAGAATGCTTTACTTCAAGGAAGCCTGGATGTCTTAATGGATCTTCGACAGCTTCTTGATGACAATTTGGAGTTACTGGTTAAGTTGAGGGATGTGTATATTGACTGGGTTCAAGGAGGT
TTTCAGGACTTTTTTACATCCCTGGAAGATTTATTTCTCTCGGTTTCGCGGGGAACCTGTGATGGAAAACTGCCTCTCACAGAGAAGTTGCAGATAGATAAGGTTTCAACAGGACTTGTGCTTGTGCTGGCCCAGCTATCTGTATTTATTGAGCACACAGCAATTCCTAATATTACAGAGGAGATTGCTATTGGTTTCTC
TGGAGGTGGTGCTAGAAGTTATGAGGATGGACCTGCATTTATACCTGCAGAGATTTGTCGAATGTTTCGGTCAGTTGGTGACAATCTTTTACATAGTTATATTAATATGCAAACGTGCAAGCTTTCATTGCTGGTCAAGAAAAGTGTAGCAACACCAAATTGGCTTAAGTATAAGGAGCCTCGGGATGTTCGCATGTTTG
TGGATTTGCTACTTCAAGAGTTGAAAACAATGGAGGGGGAAGTGCAACAGGTTCTAAATCAAGGATCAACAAGAAAACATCGACGTTCTGATAGTACAGGAAGCACCAACTCGTCTCGTAGTAATCAAATACGAGATGATAGGAGTAGCCGTTCAAACAAACATCGTGCTCGTAGTCGCTTGCTGGAAAGTCACGTGGCC
AAGCTGTTCAAACAAAAAGTTGAAATTTTTACGAAACTTGAGTATACACAGGAATCTGTAATTTCAACCATAGTGAAGATGTGCTTAAAGAGCTTTCAAGAGTATGTTCGACTTGAAACATTTAGCAGAAGTGGATTCCAGCAGATTCATTTAGACACTCAGTTTTTGAGGGAGCCATTAAAGGAAGTCGTTGAAGATGA
AGCTGTTATTGATTTTTTGTTGGATGAGGTCTGTGTGGCTGCTGCTGAACGGTGTTTGGACCCAATTCCTCTTGAACCTGCCATTTTGGATAAGCTTATTCATGCAAAGATAGCCAAAAATTCAGAGAATATTGTGAGTTCCTAGTATTTAATTTAAATAAGTACCACCAATTTCAAGGTGTCTTAAGTAGAGCATTGCC
AGCGGCTCCGGATCCTTAGATTCAATGTCCTTCCTACTCTGACTTCAATTGTGGTTGTATGAAGCTTCCCTTCCAATATCTGTAATAGGTGGATGCTGTTACAAATGTATGTTATGAACGTCAACCACAATGTATGGACTTTTTATTTCTTCAGTTTGAAAATTTGTGCTGCCATTTTTTCTATTTCACAGGCATTGATG
AGCTTTTTCTCTACCAAAAATTTTCTTAGTGTGTTCAATTAGGAGGGTATCATCAG
Intron 4 GTTTTTATTT ... ATGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.83 | 72.7 | 2 | 5 |
| A2 | 0 | 64.6 | 1 | 0 |
| A3 | 4.94 | 59.2 | 0 | 3 |
| A4 | 10.48 | 78.3 | 0 | 9 |
| A5 | 27.22 | 13.5 | 0 | 5 |
| A6 | 3.54 | 55.5 | 0 | 2 |
| A7 | 0 | 75.4 | 0 | 0 |
| A8 | 2.03 | 50.6 | 0 | 1 |
| A9 | 0 | 77.7 | 0 | 0 |
| A10 | 0 | 64.5 | 0 | 0 |
>TRINITY_DN127682_c1_g2_i3 from sample A1 / Example spliced isoformGCAACATGAATCCACAATTACTCTGTGATATATCTATGGTCTGACGCGACCCGCGTTCGACTCTTTCGAACCCACATTTACAGTTGCTTTACATTTGGGTGCACTGGAGTCGCGCATTGGAGTCTGGGCGAGGGGAGGAAGCACCCGGGGTTGCAGATTTAGAGTCGGAGATTCGAAAAATGGGAGAGGACATGTCTCTG
TCTTTTGACGAGAAAGCCAAAAGAACCAGAGATCTGCTCACAAGTTTTTATGGCGATAATTCTTCTAGTCCCGATGGACTCACCCGGAGTGACAGCTTGCTTACGATTAACACTCCCGCCTTCGATCCTGCTAGATACATGAATAACCTGGTAGGCAAAACCAATGTGGAAGGCTTGCTTCAAAGACATGTTGAGATGGC
AGCTGAAATTACGAATTTGGATAGTGATCTGCAGATGTTGGTTTATGAGAATTACAATAAGTTTATCAGTGCTACAGACACAATTCGAAGAATGAAGGATAATGTTGTTGGCATGGAGACCAATATGGAACAGCTTCTGGAGAAGATTACATCTGTTCAGTCAAAAAGTGACACTGTTAATGCATCTCTATGTGAGAGAA
GAGAATGCATAGAAAACCTGAATCGTACTCGCAGTCTTCTTTGTAAAGTGCAGTTCATATATGACCTTCCTTCACGGCTGACGAAGTGTATCAAATCTGAAGCATATGCAGATGCAGTGAAATATTATGTAGGGGCTTTGCCAGTTTTGAAGGCATATGGACAATCATCTTTTGAGAAATGCAGAAAGGAATCTGAGGAA
GCTATTGGTACAGTCATAAAGCACCTTCAGGCTCGCCTGTTCACGGATTCCGAACCAGTCGAAGCCAGGGCAGAAGCAGTTGTATTACTTAAGCAACTAGGTTTTCCGGTAGACAATCTGAAGACAAAGGTCTTGGAGGCGAAGTTGGAACATTTTCTCTCAGAGCTACAGGCTGAAGCCCGACAAGAAAATCATGCTGT
TACAGATTCAGACAAGTCTTCTGAGCACATGTCGGATTCAGTGTCAAAACAACCAGTGGAAAATTCAAAGGACTCAATTGGCGAATTTGCTAAAATGGTTACTGCTTATCGCATCATTTTTCCCAATTCCGAAAAGCGGTTAACTGAAGTTGCAATAGACCTCTTTAACAAACATTTTGCATGCCTGCGGCAACCTGAGA
AAGGAAATGCTTCTGCTGCAGAACTTATCTCTGCACTAAGAGTAATTTGTGCTGATGTCAGAAGGATGCATGAAGTATTACCGGAGGCAGGCCTTCCAGAGTATGCCGTTAAGGCAGCAGAGACAGCAATCAAACAACATGTTTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGCATTCTTGCAATACTTCAG
TCACAGCAGAGGGAGAGAGAAAGTCCAGAGAAAATGAAACCACTGCAAGTGGCTTTGGATAGTGGAAAGAATGCTTTACTTCAAGGAAGCCTGGATGTCTTAATGGATCTTCGACAGCTTCTTGATGACAATTTGGAGTTACTGGTTAAGTTGAGGGATGTGTATATTGACTGGGTTCAAGGAGGTTTTCAGGACTTTTT
TACATCCCTGGAAGATTTATTTCTCTCGGTTTCGCGGGGAACCTGTGATGGAAAACTGCCTCTCACAGAGAAGTTGCAGATAGATAAGGTTTCAACAGGACTTGTGCTTGTGCTGGCCCAGCTATCTGTATTTATTGAGCACACAGCAATTCCTAATATTACAGAGGAGATTGCTATTGGTTTCTCTGGAGGTGGTGCTA
GAAGTTATGAGGATGGACCTGCATTTATACCTGCAGAGATTTGTCGAATGTTTCGGTCAGTTGGTGACAATCTTTTACATAGTTATATTAATATGCAAACGTGCAAGCTTTCATTGCTGGTCAAGAAAAGTGTAGCAACACCAAATTGGCTTAAGTATAAGGAGCCTCGGGATGTTCGCATGTTTGTGGATTTGCTACTT
CAAGAGTTGAAAATAATGGAGGGGGAAGTGCAACAGGTTCTAAATCAAGGATCAACAAGAAAACATCGACGTTCTGATAGTACAGGAAGCACTAACTCGTCTCGTAGTAATCAAATACGAGATGATAGGAGTAGCCGTTCAAACAAACATCGTGCTCGTAGTCGCTTGCTGGAAAGTCACGTGGCCAAGCTGTTCAAACA
AAAAGTTGAAATTTTTACGAAACTTGAGTATACACAGGAATCTGTAATTTCAACCATAGTGAAGATGTGCTTAAAGAGCTTTCAAGAGTATGTTCGACTTGAAACATTTAGCAGAAGTGGATTCCAGCAGATTCATTTAGACACTCAGTTTTTGAGGGAGCCATTAAAGGAAGTCGTTGAAGATGAAGCTGTTATTGATT
TTTTGTTGGATGAGGTGAGAAAGATGATATGAGAATCACAAAATTAGGTGCCTCTGCTATTTTATTGATTTTTTTGTTTTTTCCATCTCATTTTGTTAAACTGATTTGAAGAGTCGTGCCCTTTTCTACTTGCATAAAACATATCCCATTCTTTCCTCATGTAAACCGTAACATCTGAAGATTTCACATACTCAACCAAG
ATACAAATGACAAGGAAGACATGGCGTGGATGTGTAACAATGCTTGTTGCAATCTTTATCTCATGAATGTTGGGTGCCCTCTAAGTTGATCTGCCATTATCTTAACCAGACTGTTCACTACTTATCTATTTCTCTTTTGTATCAACTTTTTGGCTGGGAAACATTCACTGGCTTCTGGTAAATAAGAAATCACATACCAA
GCCATTGCTTGCCCTATCAGATGCTGGTTCCCACCTTATAGTTTGAAAAGTATCTGCTACTGGCTTCAGACTTCTTGTAAGGAAAGAACATACATATGTAATTGGCTAATAACAGCCTACTTTACATCTTAAAAAATGAGAGACTGATCTCCTGAATTTATTTTTGCATCTGCCTCTTCGCATTCCTTAAAAGGTGTTTA
TTGTTTATTTCAGGTCTGTGTGGCTGCTGCTGAA
>TRINITY_DN127682_c1_g2_i15 from sample A1 / Example unspliced isoform:CCTTCCAGAGTATGCCGTTAAGgtttttattttctttcaacaaacattgcttgtgttttgtggataggtttgctatggaatgtggatacatcctggtcattttgtctactttagcctatttttctaaaatgcataatagaattgtttgatatatattaaaaatgcttgctgaataggctattcaaggcactgcaaatttg
ctgccttaacacaaattagcctgatgcaatgctttcagatgttttgcaattaaggattaccattttaaaatgtatgtcttacatgcaatataatccagggtttgatatatgaaggatcatcttgctttgtttgcttagcattctgacttcatttgccattaatgtttgcagGCAGCAGAGACAGCAATCAAACAACATGT
TTCAAATATGTTTGGTCACCTTTTCTCACAAGTGACAGGTGCAGAGTGCTAATCTGTGTCTTTTTGTGATCTTTTTATTTGAAACTAGAGATCTTTATCATCAAAGAGAATTAAGTTGGAAATTTCCCTCTGCATATGTCGTTGATAAATTTGATCAATTGAAATGGAGACATATTTTTAACATGGCTAATTTGAAAGCG
CACCTTATCTCAGCATTATGCTTCTGTGTTGGGGATGCCATAAGAGACTCAGATGTATCATGTCTGCTGCACTAAATGGTCCCTTGCATTTCACATTAGATGTAAATAAGATGGTCATGTAAGTGACATTGATCCTGCTTAGTATTATTGATCTGTGTATTCTAGCAGTAATGCCACCTTGTATTTATTGATGAGGGATA
AGTTATGATAAAACACATTCAAGTAAATACAAGTGAACTTTTACATTAAATTGATTCAGAGAAGCAGTCATTTCACTCATGAAGATTTTTGGAGGAGAGAAAAGTATAAACTGTTCCAGTTATGTTCACAGTTAATCACTGGATCTTCTTAACATTCATTAAAGTGTTACCAACCGCGGCCGATTTATCGCGATTTTTCT
CCAGTCCCGATTTTCTAACAAAAAATTGCTCTAAAAATCGGTCCAATTTTTTGTTGATTTTTTGCCGATTTTTCCCGAGTTGACCGAGGCCCGATTTTTTGC