sp|F4IV99|CHR5_ARATH ----> Protein CHROMATIN REMODELING 5
Intron 1 GTAAGCTGTA ... GATTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.53 | 40 | 14 | 12 |
| A2 | 21.05 | 45 | 7 | 17 |
| A3 | 15.07 | 31 | 6 | 5 |
| A4 | 4.76 | 10 | 1 | 0 |
| A5 | 36.84 | 12 | 7 | 7 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 1 | 1 | 0 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | 23.08 | 5 | 0 | 3 |
| A10 | 0 | 6 | 0 | 0 |
>TRINITY_DN128599_c2_g1_i10 from sample A1 / Example spliced isoformAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTCCGATTAGCCTC
TTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGATATTTCGGATAA
TTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTGGACAATATCAA
AGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCAGACTCAGATTA
CCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGGTAAAGAGGGTA
ACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCGGCAGCAGAGGT
AGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAGAGAGGTAGGAT
AATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTATGCTGAAAGTG
AACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGGAGCTAGATTGG
AATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCAGCAAGGAAATGGAGCT
AGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGGTGAGTTCTTTATCCTTTT
TAAAAGAAGGCCTCTGCAGTGTTCTTGTTGGTTTGTTTTGATATTATTCTAAATTCTATTTAGTAATTACAATAGTGTAGTTTCCTGGAAACTAGACTAGCTGTTTGCTGCAATATATTCATTCATTCTGAAAACTTTTTAGTATATGTTGTGCTGTGATGTTAACTCCTTTGTGCTTTCTCTGTTAGAAAGACAAATAT
AAAGCACTGTATAAAACATGTTATTTAGGTTTCTTTCTTA
>TRINITY_DN128599_c2_g1_i11 from sample A1 / Example unspliced isoform:AGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTCCGATTAGCCTC
TTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGATATTTCGGATAA
TTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTGGACAATATCAA
AGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCAGACTCAGATTA
CCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGGTAAAGAGGGTA
ACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCGGCAGCAGAGGT
AGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAGAGAGGTAGGAT
AATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTATGCTGAAAGTG
AACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGGAGCTAGATTGG
AATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATgtaagctgtaaatcaatttcagatccagagggttctcacaaatttatgatttaattttcagatagagagggttctttcaaattttgatttataaatcttacttttgcttgctggctaag
atacctagtttaggatcccctaagtttcatcatcattttttttagtttattcattcaaaattagttaaacaggccattcattgtgatgattatacagCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCA
GCAAGGAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGT
CGCGAAGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCCT
CGGAAAAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTCT
ATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTCAGTACCAAAAATAAGTTGTTGATT
ACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATC
TTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCT
ATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTG
GATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAAT
TGGTCCGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCA
GGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTT
TGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGAGCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCC
TCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCAACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAG
ATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGTGGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCC
AAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAAATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACG
GAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGACGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGG
TTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGAGAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAG
GTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACATTCAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGG
TGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAGCTTCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTG
GCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGGGTCCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAG
ACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCCTGCTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTA
GTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCCTGGCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTG
GAGAAATTGTAAATCATTTTTGAAGTTCATATGAAAGTTGTTCTTTACATTTTATGATACTTATCTGGATTTTTTTTGTACAATGTTCTGCTCTTTACCTATAACTTTGCTAATGTCAACTGAAAGACATCAAGGAATGCTTTTGGTACTGGCATTTTTGTAAATTGAATATCACACTCCTGCAGTTTTGTTGGGAAACT
CTCAACGACATTACTTTGACCCAGAGTGAAGCATTTGAGAAGAGTATCATGTACAGTGAAGCCCTCTTAGTAACAAGGGAACATAACATTGATAATTATGCTTCCTGAGAAATTGTTGTTCCATCTCTACCTGTGAAATGTCACAAGAACACAGAATTAAGACCTGCCTAATGAGAGTTCCCTGGGAAATAGATCAAGG
Intron 2 GTTAGTTATT ... TCGATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.54 | 48.1 | 3.5 | 14 |
| A2 | 27.5 | 29 | 5 | 11 |
| A3 | 27.45 | 37 | 11 | 14 |
| A4 | 15 | 17 | 3 | 3 |
| A5 | 7.69 | 12 | 3.5 | 1 |
| A6 | 50 | 1 | 0 | 1 |
| A7 | 37.5 | 10 | 0.5 | 6 |
| A8 | 20 | 4 | 0 | 1 |
| A9 | 28.57 | 5 | 0.5 | 2 |
| A10 | 20 | 4 | 0.5 | 1 |
>TRINITY_DN116412_c2_g1_i15 from sample A2 / Example spliced isoformAGGTTTGCCAGCAGTATGAATTCTATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTC
AGTACCAAAAATAAGTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGGTCAGTGGGTTTGGATAATATTCATAGTTTGTCCATGTGTTCTT
ATTCATTTATGTTATTGTGTTGGTCTTCACTCCATGCTTTTCACTATTATGTGCCATAATGTTAAAAGAACAATCTGTTGTCGGTTGTATGGTAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAG
ATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGT
TCAACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAA
TGGAGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTT
ACCAGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAA
TGAGGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGT
>TRINITY_DN116412_c2_g1_i18 from sample A2 / Example unspliced isoform:TGAAAGAAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCG
AGCCTCCGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTT
TGAGATATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAG
TAGTTGGACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAA
AAATCAGACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATT
ATCAGGTAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTC
TGGGCGGCAGCAGAGGTAGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGT
CCAAAGAGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAAT
ATCGTATGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAG
ACGGGGAGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTC
AGCAAGGAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAG
TCGCGAAGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCC
TCGGAAAAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTC
TATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTCAGTACCAAAAATAAGTTGTTGAT
TACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAAT
CTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGgttagttattcgtacagtgtcaaagatcttgtgtggatctgcttatgataaaatcaagggatatgaatatattccaat
ttaaatgaggtccatgcacaacttcttttatatgcttttttttgctttattggatatatttatgacttatttcgatttcagGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCA
ACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGG
AGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACC
AGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGA
GGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTG
AAGAAGCATTGGCACCACGTGCTGCAAGGAGCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGG
GCAGGTGGTGGGCTGTCAAAGAAGGATGCAACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGG
CAAGGCGGCTGTCTTGGACTTTTTTGGGGTGGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTC
TTCTTGGCATTCACTATCATGGGTATGGAAATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGA
TTTCAATCAACTGATAAGGTAGGTTCTAGACGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATC
AGAAGAGCCTCAGTACCAGAGATACAAGGAGAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGC
AGAAAATTGACCTTATCTTGAAAGAACATTCAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGT
GGCAGAGATGTTGATCCCAGTCAGCCAGCTTCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCC
TCCAGTGAGCTCGTATGCACAGTATGGGGTCCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATA
ATGGCTCCTTTCCAAATAGTCATCCTCCTGCTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAA
GAGATAGGCTATTCTTGGTGAAACCTCCTGGCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGAAAGTTG
TTCTTTACATTTAAAAAAAAATAAATAAAAAAAAAAAGAAAAAATTATCTTCTTGTTATCC
Intron 3 GTATGTTACT ... GCATCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.36 | 39 | 1 | 9 |
| A2 | 14.81 | 46 | 2 | 14 |
| A3 | 28.57 | 40 | 11 | 21 |
| A4 | 35.71 | 9 | 5 | 5 |
| A5 | 21.74 | 9 | 2 | 3 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 1 | 0 | 1 |
| A8 | 20 | 2 | 0 | 1 |
| A9 | 9.09 | 5 | 0 | 1 |
| A10 | 11.11 | 8 | 0 | 2 |
>TRINITY_DN117250_c0_g1_i5 from sample A3 / Example spliced isoformAAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTC
CGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGAT
ATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTG
GACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCA
GACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGG
TAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCG
GCAGCAGAGGTAGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAG
AGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTA
TGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGG
AGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCAGCAAG
GAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGCGA
AGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCCTCGGAA
AAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTCTATACC
GACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGTATGATTCTCCACCTGGATTGTGCCTATTGATAG
TCATCCAATTGCTTTACCATGCCCCCGTAGTAATTAGCTATTGCAATTGTTATTTCTAATTGGTTTTAATATAGCTATTGAGGATGTCCTTTTTCCACAGGAATTCAGTACCAAAAATAAGTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGT
TCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGG
ATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGT
TATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATT
TTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAA
CGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACAT
GGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGA
GCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCA
ACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGT
GGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAA
ATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGA
CGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGA
GAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACATT
CAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAGCT
TCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGGGT
CCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCCTG
CTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCCTG
GCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGA
>TRINITY_DN117250_c0_g1_i9 from sample A3 / Example unspliced isoform:ACAGGCCATTCATTGTGATGATTATACAGCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGgtatgttactgattaaattttctgtaacagttgagaagctctgaattgtagaaatgagcccaactgtgaaggattaaaacagaaaac
cttctttttgcagtaactgttagtcatctgatttccatcccttcactgtattgctttattgttttggagcatttacattccttgcctcatcattcatttatgctagattaaattttggttataaatttgcaaatcaattttttgaatttattagtgtgattgcatctacagGCAGAGGTCCATGATGTCAGCAAGGAAAT
GGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGG
Intron 4 GTCAGTGGGT ... TGTATGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.48 | 31 | 9 | 6 |
| A2 | 14.71 | 29 | 4 | 6 |
| A3 | 22.22 | 35 | 9 | 11 |
| A4 | 19.15 | 19 | 5 | 4 |
| A5 | 20 | 10 | 2 | 3 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 17.65 | 7 | 0 | 3 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | 14.29 | 3 | 0 | 1 |
| A10 | 20 | 4 | 0 | 2 |
>TRINITY_DN116412_c2_g1_i14 from sample A2 / Example spliced isoformCCTTGCATTGTAGGCCTTGGAAACAGATAATTGCTATCTTTACTTAGATTAACATTAAACAAAGAATGATATATGAAAGCAATCGTAGTGCTTTAATGCATGTATTTAGTAGGTGTTGATTGTGGTTTCCAGTTAGTATCTAGTCTGGGCAACGTACTTTGTATGTTGTTGCCTATCTTGGCATATTGCTCTTACCAATT
TTGGTTTTCAGGGTGTAACTTCTCATGTTAGATGTTTTTCGTAGATGGTTAACTTTAATGTTCTCTTCACAATTTGGAAAAAATGAGGATTCTTTAGAAGATCAATATTTTGAAATTGAATAATTTACTAGTCTGTCTATTTCCAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGAT
GCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAGAGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATC
GAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTATGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAG
ATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGGAGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAG
CTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCAGCAAGGAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACAT
TGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGCGAAGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAAC
CTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCCTCGGAAAAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTG
TCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTCTATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTC
AAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTCAGTACCAAAAATAAGTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATT
TTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTT
CATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCT
TAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAA
CCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATG
GTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACT
TGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGAGCACCAAAAGCTATGCAG
AGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCAACTAATTTTGTAAAAGCG
GTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGTGGCTGTCAAAGCACAAGA
ATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAAATTGGGAAAAGATAAGAA
CCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGACGTGAAAGAGATATCAAA
ACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGAGAAGATTGACCAAGAGAC
GAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACATTCAAACTCGCGCAATTCTA
GGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAGCTTCATTTGTTGCTGATCAT
TCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGGGTCCCATCAAATGGTAGCAG
ATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCCTGCTTTTATGCCTTAAATGT
TATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCCTGGCTGACATAATGAATGTA
AATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGAAAGTTGTTCTTTACATTTAAAAAAAAATAAATAAAAAAAAAAAGAAAAAATTAT
CTTCTTGTTATCC
>TRINITY_DN116412_c2_g1_i15 from sample A2 / Example unspliced isoform:AGGTTTGCCAGCAGTATGAATTCTATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTC
AGTACCAAAAATAAGTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGgtcagtgggtttggataatattcatagtttgtccatgtgttctt
attcatttatgttattgtgttggtcttcactccatgcttttcactattatgtgccataatgttaaaagaacaatctgttgtcggttgtatggtagCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAG
ATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGT
TCAACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAA
TGGAGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTT
ACCAGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAA
TGAGGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGT
Intron 5 GTATGATTCT ... TTTTCCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.71 | 32 | 17 | 4 |
| A2 | 12.5 | 35 | 9 | 1 |
| A3 | 22.22 | 42 | 12 | 12 |
| A4 | 23.08 | 15 | 1 | 8 |
| A5 | 12.5 | 14 | 4 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 17.65 | 7 | 3 | 0 |
| A8 | 20 | 4 | 1 | 1 |
| A9 | 23.08 | 5 | 3 | 0 |
| A10 | 16.67 | 5 | 0 | 2 |
>TRINITY_DN117250_c0_g1_i4 from sample A3 / Example spliced isoformAAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTC
CGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGAT
ATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTG
GACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCA
GACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGG
TAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCG
GCAGCAGAGGTAGACATCAAAAGCAGAAGTCTGTCTATTTCCAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTC
TCCACACGTCCAAAGAGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGT
TCGGAAAATATCGTATGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATA
CACCATCAGACGGGGAGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTC
CATGATGTCAGCAAGGAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGA
ATATAAGAGTCGCGAAGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATG
AGATGGGCCTCGGAAAAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAG
TATGAATTCTATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTCAGTACCAAAAATAA
GTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATG
TTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCG
GATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTT
TCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAG
CTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCA
GCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGA
TGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGAGCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGC
AAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCAACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAA
GCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGTGGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCC
CACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAAATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTG
CCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGACGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAA
CGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGAGAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACC
TAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACATTCAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAG
ATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAGCTTCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGA
ATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGGGTCCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCC
ATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCCTGCTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTG
CTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCCTGGCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGAT
TCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGA
>TRINITY_DN117250_c0_g1_i5 from sample A3 / Example unspliced isoform:AAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTC
CGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGAT
ATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTG
GACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCA
GACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGG
TAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCG
GCAGCAGAGGTAGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAG
AGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTA
TGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGG
AGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCAGCAAG
GAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGCGA
AGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCCTCGGAA
AAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTCTATACC
GACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTgtatgattctccacctggattgtgcctattgatag
tcatccaattgctttaccatgcccccgtagtaattagctattgcaattgttatttctaattggttttaatatagctattgaggatgtcctttttccacagGAATTCAGTACCAAAAATAAGTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGT
TCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGG
ATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGT
TATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATT
TTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAA
CGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACAT
GGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGA
GCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCA
ACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGT
GGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAA
ATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGA
CGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGA
GAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACATT
CAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAGCT
TCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGGGT
CCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCCTG
CTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCCTG
GCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGA
Intron 6 GTAAGCATTT ... AAAACTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 45 | 12 | 15 |
| A2 | 16.13 | 39 | 6 | 9 |
| A3 | 27.27 | 40 | 14 | 16 |
| A4 | 15.56 | 19 | 3 | 4 |
| A5 | 32 | 17 | 7 | 9 |
| A6 | 33.33 | 2 | 0 | 2 |
| A7 | 33.33 | 3 | 0 | 3 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 25 | 6 | 0 | 4 |
| A10 | 23.08 | 10 | 5 | 1 |
>TRINITY_DN116412_c2_g1_i18 from sample A2 / Example spliced isoformTGAAAGAAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCG
AGCCTCCGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTT
TGAGATATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAG
TAGTTGGACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAA
AAATCAGACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATT
ATCAGGTAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTC
TGGGCGGCAGCAGAGGTAGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGT
CCAAAGAGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAAT
ATCGTATGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAG
ACGGGGAGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTC
AGCAAGGAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAG
TCGCGAAGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCC
TCGGAAAAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTC
TATACCGACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTCAGTACCAAAAATAAGTTGTTGAT
TACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAAT
CTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTTAGTTATTCGTACAGTGTCAAAGATCTTGTGTGGATCTGCTTATGATAAAATCAAGGGATATGAATATATTCCAAT
TTAAATGAGGTCCATGCACAACTTCTTTTATATGCTTTTTTTTGCTTTATTGGATATATTTATGACTTATTTCGATTTCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCA
ACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGG
AGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACC
AGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGA
GGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTG
AAGAAGCATTGGCACCACGTGCTGCAAGGAGCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGG
GCAGGTGGTGGGCTGTCAAAGAAGGATGCAACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGG
CAAGGCGGCTGTCTTGGACTTTTTTGGGGTGGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTC
TTCTTGGCATTCACTATCATGGGTATGGAAATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGA
TTTCAATCAACTGATAAGGTAGGTTCTAGACGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATC
AGAAGAGCCTCAGTACCAGAGATACAAGGAGAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGC
AGAAAATTGACCTTATCTTGAAAGAACATTCAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGT
GGCAGAGATGTTGATCCCAGTCAGCCAGCTTCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCC
TCCAGTGAGCTCGTATGCACAGTATGGGGTCCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATA
ATGGCTCCTTTCCAAATAGTCATCCTCCTGCTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAA
GAGATAGGCTATTCTTGGTGAAACCTCCTGGCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGAAAGTTG
TTCTTTACATTTAAAAAAAAATAAATAAAAAAAAAAAGAAAAAATTATCTTCTTGTTATCC
>TRINITY_DN116412_c2_g1_i10 from sample A2 / Example unspliced isoform:TGAAAGAAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCG
AGCCTCCGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTT
TGAGATATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAG
TAGTTGGACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAA
AAATCAGACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATT
ATCAGGTAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGgtaagcatttcaaatgcttaatccttcttttctatgatc
aggattgatttgtataattttccatattaagactagatagaatttctgttggtgttgttgcaactataagctgtttgcatagaagtgttatcattttttaactaaaagtaagaagttttaatgtttcccatcaaaactgtagAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCGGCAGCAGAGGTAG
ACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAGAGAGGTAGGATAA
TATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTATGCTGAAAGTGAA
CAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCA
Intron 7 GTTAGTGCAT ... GTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.71 | 29 | 5 | 5 |
| A2 | 11.67 | 53 | 8 | 6 |
| A3 | 16.92 | 54 | 13 | 9 |
| A4 | 20.51 | 31 | 5 | 11 |
| A5 | 10.34 | 13 | 1 | 2 |
| A6 | 14.29 | 36 | 6 | 6 |
| A7 | 13.4 | 42 | 4 | 9 |
| A8 | 14.29 | 66 | 9 | 13 |
| A9 | 17.65 | 42 | 11 | 7 |
| A10 | 11.76 | 45 | 8 | 4 |
>TRINITY_DN117250_c0_g1_i5 from sample A3 / Example spliced isoformAAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTC
CGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGAT
ATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTG
GACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCA
GACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGG
TAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCG
GCAGCAGAGGTAGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAG
AGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTA
TGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGG
AGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCAGCAAG
GAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGCGA
AGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCCTCGGAA
AAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTCTATACC
GACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGTATGATTCTCCACCTGGATTGTGCCTATTGATAG
TCATCCAATTGCTTTACCATGCCCCCGTAGTAATTAGCTATTGCAATTGTTATTTCTAATTGGTTTTAATATAGCTATTGAGGATGTCCTTTTTCCACAGGAATTCAGTACCAAAAATAAGTTGTTGATTACCGGGACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGT
TCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGCCACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGG
ATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGTGGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGT
TATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGGTAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATT
TTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTCAGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAA
CGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTTGGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACAT
GGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAGTCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGA
GCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATCGAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCA
ACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGATGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGT
GGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTCTTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAA
ATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGGAATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGA
CGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAGCCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGA
GAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACATT
CAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAGCT
TCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGGGT
CCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCCTG
CTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCCTG
GCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGA
>TRINITY_DN117250_c0_g1_i10 from sample A3 / Example unspliced isoform:AAAGAAAAGAAAGAAAAGACACAGTGGAGTGGGTGGTTTCATATTTTCATTCTTTTTTCTATTTTTATCGTTATTAAATATATGTTGTGCGTGTTCTTCCTTCCATGGATATGATGGCAGGGCAGAGTAGAGTAGTTTTTAGGGATTATTGCCTCCACGCCTTCTGCTCACAAAACTGTCGTTGCTGTGCGTCGAGCCTC
CGATTAGCCTCTTAATCGACATCCGAAACCCTCGGATTAAACAAAACCTACAAATCAAAACTCCAAGCTTTAACAACAACAAAAACAACGGACAGAATCAATCATTCATTCTTTCTTTTCACAGGGGCCGCGCGGGAGAACGATCGATCGATTGGATTGCTGCCTTCATTATTTTTGGCTGAGAAATTTTGTTTTGAGAT
ATTTCGGATAATTTAGTGTTTGAAGAAAGCTTCCATGTAAAGAATGGCGTTTTATGGGGATTATAGCATTGGTGGTGATCCAGACCAACATCTGGCAAATGAAAAGGCTGAAGAGAGCAGTTATAGAGATGGAGAGATACCTCACAGTTCCTTGGGTAATGGTAGGGTAGATGCGAGTTCAAGTGATAAAGAAGTAGTTG
GACAATATCAAAGTGATGATGAAGTGACAGGTAATAACAGGATTCATGATAAAGATGATGAACCTATTACCGGTAGGCGGCAAGGTTTGCAGCATCCATCAAGGAGGATGGTAGGTAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGAGGAAGCTTCTGATTCTGGTCAAGAGTCAAAAAAATCA
GACTCAGATTACCATGCCGAGGAAGAATTTGAAAATAATGCATCTGAGGGTGGAGAAGACCAGTCAGAACCAGTGGATTATTATGGTGAGAAGAACTTTGGAGAAAATCAAAGAGACCAAGCAGGGGTTCCTGTTGAAGAGATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCACAGTGAATCATTATCAGG
TAAAGAGGGTAACAAAGTAAGAAGCTTAAGTTCCAGGTTTTCAATTAGGGATGCCAATAGTAACAAGAACCTTGCAAAGGGTGTAAAGGTAGTAAAATCAGATAATGATGATGATGAGGACTACCATGAAGAAGATGGCGAGGATGAGGAAGATGAAGATGATCCCGATGATGCTGATTTCAACCCTATATCTCTGGGCG
GCAGCAGAGGTAGACATCAAAAGCAGAAGGTTGAGCACTCTGAAAGTGACGATTATGCAGAAGAAAAGGATGATGATGATGATGCAGATTCTTCAGAAAGTGATGAGGAGTATACAGGGCGTAGCTATCGAGCTAACCGCAGAACTACAAGATCTTTACAATCTGGTAAAGAAACAAAAAGTGTCTCCACACGTCCAAAG
AGAGGTAGGATAATATCAGATGAGGAGGAATCTTCTGCCCAGGATACAGATGAAGACAGTGATGAAGACTTTCATCGACAATCGAGGAAGGTCACATCACTTCGTAGAAGGGGTGGGGGTCGACAAAATGCATTTGGGAACAAAGATGTTCGTTCAAGTGAACTGCGGACTTCAACTAGATCAGTTCGGAAAATATCGTA
TGCTGAAAGTGAACAAAGTGAAGATGAAGAAGAGGAGAGGGCCAAGAAACGGATCAAGATTTCAATAGAAGAGGCTGAGGAAGATGATGCTGATGCAATTGAGAGAGTATTGTGGCATCAACATAGAGGTATGGCCCAAAGTGGATTGCCAGAAAATAGACAGCCTGTGCTGGTTGTCTTGAATACACCATCAGACGGGG
AGCTAGATTGGAATGAAATAGAGTTTTTGATTAAGTGGAAAGGACAGTCATATATGCACTGTCAATGGCAATCTTTGTCTGAGCTTCAACATCTGAGTGGATTCAAAAAGGTGTTAAATTATACCAAGAAGGTGGAGGAAGAACGAAACCTTAGGCGGGCACTTTCACGAGAAGAGGCAGAGGTCCATGATGTCAGCAAG
GAAATGGAGCTAGAGCTTCTCACTCAATATAGACAGGTTGAGAGGGTCTTTGCAGACAGAACAACTAAGATTGATTCTGACATTGAGGTCCAGGAATATCTAGTTAAGTGGAAGGGGCTCTCATTTGCTGAAGCAACCTGGGAGAAAGACACAGACATTGCTTTTGCTCAAGATGCTATTGATGAATATAAGAGTCGCGA
AGCTGCAATGACAATTCAAGGAAAGACTGTCGATGCCCAAAGAAAGAAAAGCAAAGCAAGTTTGCGTAAACTTGATGAACAACCTGAATGGTTGAAAGGAGGCACACTTCGTGATTACCAATTAGAAGGGTTGAACTTTCTTGTGAACAGCTGGAGGAATGATACAAATGTTATTCTTGCGGATGAGATGGGCCTCGGAA
AAACTGTGCAATCTGTGTCAATGCTTGGGTTTTTACAGAATGTGCAGCAGATACAAGGTCCTTTCCTTGTAGTTGTTCCCTTGTCAACATTAACAAACTGGGCAAAAGAATTCCGCAAATGGCTGCCTGACATGAATGTTGTTGTTTATGTTGGCAATCGTGCAAGTAGAGAGGTTTGCCAGCAGTATGAATTCTATACC
GACAAGAAGACTGGCCGAATTATTAAATTCAATGCATTATTGACCACATATGAGGTTGTGCTGAAAGACAGGTCTATTCTGTCAAAGATCAAGTGGAATTATCTCATGGTTGATGAAGCACACCGATTGAAGAATAGTGAAGCCTCACTGTACACCTCTCTTTGTGAATTCAGTACCAAAAATAAGTTGTTGATTACCGG
GACACCTTTGCAGAATAGTGTTGAAGAGCTCTGGGCTCTACTGCATTTCCTTGATCAGGACAAGTTCAGGAATAAGGATGATTTTGTGGAGAAATACAAGAACTTGAGCTCAATCGATGAGAATGAGCTTGCTGATCTACATAAAGAGCTTCGGCCTCATCTGCTCCGAAGAGTCATCAAAGATGTTGAGAAATCTTTGC
CACCAAAGATAGAGCGCATTTTAAGAGTTGAGATGTCTCCTCTTCAGAAACAGTACTATAAATGGATTTTGGAGCGGAACTTTCATGATTTGAATAAGGGAGTGCGTGGAAACCAGGTGTCACTATTAAATGTTGTTGTTGAATTGAAGAAATGCTGTAACCATCCATTTCTATTTGAGAGTGCGGATTATGGCTATGGT
GGAGATGCCAACATGAATGATAGCAGCAAAGTTCAACGTATCATTCTAAGCAGTGGCAAGCTAGTTATTCTGGACAAATTGCTTAATAGGCTGCGTGAGACGAAACATCGTGTCTTGATATTCTCACAGATGGTCAAGATGTTGGATATACTTGCAGATTATTTGTCTTTGAGGGGCTTTCAGTTTCAGAGACTGGATGG
TAGTACAAGAGCAGACTTGCGTCATCAGGCAATGGAGCATTTTAATGCACCGGGAAGTGAAGATTTTTGCTTTTTACTTTCAACCCGTGCAGGAGGTCTGGGAATCAATTTGGCTACTGCAGATACAGTTATTATCTTTGATTCCGACTGGAATCCTCAAAATGATTTACAGGCAATGAGTAGAGCTCATCGAATTGGTC
AGCAGGAGGTTGTCAATATTTATCGTTTTGTTACCAGCAGGAGTGTGGAGGAAGACATTCTAGAACGGGCTAAACAGAAGATGGTTCTTGATCATTTAGTGATTCAGAAGCTAAATGCACAAGGTAGACTGGAAAAGAAAGAAGCCAAGAAGGGAACTGCATTGTTTGATAAGAATGAGCTCTCAGCGATTCTCAGGTTT
GGTGCCGAGGAGCTCTTCAAGGAAGATAAAAATGAGGAGGAAGCAAAGAAGAAACTTGAGAACATGGATATTGATGAGATACTTGAAAGAGCTGAAAAGGTCGAGTCAAAGGAAACTGAAGAGCAAGGTGAAAGTGAACTATTAAGTGCTTTTAAGGTTGCGAACTTCAGCACTACAGAAGATGATGGGACATTTTGGAG
TCGTTTAATTCATCCTGAAGCAATATCACAAGCTGAAGAAGCATTGGCACCACGTGCTGCAAGGAGCACCAAAAGCTATGCAGAGGTTCCCCAACCTGAAAAAAATGGAAAGAGGAGGAGGAGAGGAAGTGAAGTGCAAGAACGGTTGCAGAAGCGCTCTGGAAAAATTTCAGAAGCACCTGTGCAAACATTGCCTCATC
GAATTGAACGTGCTGCAGGTTCTGTTTGTGAATGGGCAGGTGGTGGGCTGTCAAAGAAGGATGCAACTAATTTTGTAAAAGCGGTAAAGAAATATGGTGAACCAAGTCGCATCAATGTGATAGCAGCTGAAGTTGGGGGATCAATTGAATCTGCGACAACCCGTGCCCAAATGGAACTTTTTGAAGCATTAATAGATGGA
TGTAAAGAGGTCGTTAGAGAAGTAAATGGCGAGGGCAAGGCGGCTGTCTTGGACTTTTTTGGGGTGGCTGTCAAAGCACAAGAATTGGCAGAACGTGTAAGGGAACTCCAACTTTTATCAAAACGTATCCAGCGATATCAAGACCCTGTCCAACAATTTCGATTGAAGACACACCCCAGAAATCCCACATGGTCCAAGTC
TTGCAGCTGGAATCAAGTGGATGATGCAAAACTTCTTCTTGGCATTCACTATCATGGGTATGGAAATTGGGAAAAGATAAGAACCGACTCTATGCTTTGTCTAACTGGAAAGATAGCTCCAGCTGGTCTTTCAGCTTCAGAAACATTTCTACCTCGTGCTCCGCACTTGGACGCTCGGGCCTCTGCCCTTTTACGGAAGG
AATTTGAGTCTGAGAAGGCTCAACCAACTGCAAGATTTCAATCAACTGATAAGGTAGGTTCTAGACGTGAAAGAGATATCAAAACTCTAAATATTGACTTGAAGGAAGGGCACAGACCGTCATCTAAAACAGTATTCAGTAATCCAAAGCAGTGGACTAAGCCAAATAAGGAACGCCATCAGAAACGTCCTAAGGTTGAG
CCCAGAGTGAAGGAGGAAGGTGAAATATCTGAATCAGAAGAGCCTCAGTACCAGAGATACAAGGAGAAGATTGACCAAGAGACGAAAGAAGAAAGGTGGAGAGAATGGTGTGCTAATGTCATGGAGGATCAGTTACGCACTCTGAAACGATTGCAAAAGTTGCAGACAACCAGTGTTGATCTACCTAAAGAAGAGgttag
tgcatttctggtgggttcaggaacataaataatgctttctgtcaagtgtattaaaactctcacaattgataaagtctgctgggccagccataatttgtgatttaagatgtactgaaactcaagtatttgcagGTACTCTACAAGGTGAAAAAATATTTGCAGCTTCTTGGGCAGAAAATTGACCTTATCTTGAAAGAACA
TTCAAACTCGCGCAATTCTAGGATGGTTACGCGTCTATGGAACTATGTTGCTACATTCTCAAATTTATCTGGAGAACGTCTTTCAGAGATATATCAGAAACTCACTCAAGAGGCACATCAAGATACTGGGGGTGCCTCTACTGACATTAACAGCTCTGCAGCTGGCCCTAGTGGCAGAGATGTTGATCCCAGTCAGCCAG
CTTCATTTGTTGCTGATCATTCCAATACACGAAGGTATCAGCCTTTGGAAGGACATGTTGCAGACACAGTTCACAGGGACCAGGAGACAGGAAAGTCAGAAGCTTGGAAGCGGCGTAGGAGAATCGGTGGTGGCTATGAAGATAGGGATGGGCAAGGAAGTATGGATAGGCCTCCAGTGAGCTCGTATGCACAGTATGGG
GTCCCATCAAATGGTAGCAGATTTCAGGATCCCAGTTCAGCAGGTATCTTAGGGTGTGGTCCTGGAGACCATAGGCGGGTTGTTGGTGAAAGATGGAATAGGTCACACCCGAACTATCCCCCATCCGGGCAGACAGACCATGCTATACCCAGACAGGGCAGGCAAACTGATAATGGCTCCTTTCCAAATAGTCATCCTCC
TGCTTTTATGCCTTAAATGTTATATGCGATCACAGTAACTAGCTCCATCTGTTGCATCTGAATTATCTTCAATATTGATACATGCAATAGTAACATGACCTTGTGGTAAAGCAGAGAAGCTGCTACAAGGTAGTAACATTCAATCCCTGGTCAATGGGGTAGCAGGTCAAAAGAGATAGGCTATTCTTGGTGAAACCTCC
TGGCTGACATAATGAATGTAAATATGGGTTGTGGGGTCTCTCTTCAGAAAAAAATTATCTTCTTGTTATCCCCTCAGATTTTTTGTTCTATGCAGGTAATAATGGCATATCCTTCATTGGATTCTCAAATTGGAGAAATTGTAAATCATTTTTGAAGTTCATATGA