sp|Q5W7F2|AGD3_ARATH ----> ADP-ribosylation factor GTPase-activating protein AGD3
Intron 1 GTACATGTTC ... AATGATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.92 | 45 | 14 | 7 |
| A2 | 14.58 | 41 | 7 | 7 |
| A3 | 12.78 | 58 | 12 | 5 |
| A4 | 20.47 | 68 | 17 | 18 |
| A5 | 22.45 | 19 | 5 | 6 |
| A6 | 15.29 | 36 | 6 | 7 |
| A7 | 17.24 | 108 | 31 | 14 |
| A8 | 22.92 | 37 | 14 | 8 |
| A9 | 23.5 | 70 | 32 | 11 |
| A10 | 14.81 | 46 | 6 | 10 |
>TRINITY_DN134031_c1_g2_i2 from sample A1 / Example spliced isoformATAGCTGTTGGAGGGCCTGTGATGACAAAGTTCACTATTGCTCTGCGTGAGATAGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTAAATGACAGGTTGATGCAGTTTGTGAATGTCGATCTACAAGATGTAAAGGAGGCCCGGAAGCGCTTTGACAAAGCTACTCTTCATTATGATCAGGCGCGTGA
AAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGACCACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGC
AGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCACAGCAGTCCAGGGAAAGGACGAGTTATGAGCAAGCTGCTCTTGCAGAAAGGATGCAGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCTACTTCTGGGGATGGTATTCAGGCC
GTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAGGTGCAAACAATAAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGGAGCTGC
AAACCAGCTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCTCACCATGCGACACCCCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCAT
TAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATCACTTTTGAATTCTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGAT
TTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTATGCAGGGCGTTTTGGCAGCTGAACAACAGGAGAGGCCCATTGAGATACTGCGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCT
GGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACACTGGATGTAAAGGTTTGGGAACCTTCTGTTATTAATTTGTTCCAGTCCCTTGGTAATATGTATGCAAATTCAATATGGGAAGAGCTTTTAGAAATTGGGCAGGACAGTGTTGATTGCAATA
GCAGACTAGATGGCCATGAACATAAGGCAAATTGCATATCCATCAACAAACCAAGCGCTAGGGATACTCTTTCAACTAAGGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGCGATTAGTATCAAAGGAAAAATTTGATCCGGAATTACCACCATTGGATTATCGTATGTGGGATGCAGTTCAAACAAATAACAAACAA
ATGGTTTACCGTCTTCTTGTCATGTACGATGCAAATATTACAACTACTTATGAGCAGTCTAAGTCGAGCAGTTTTTCTAATTTGTTAATGGGTAGTTCAATGAATCATGATATATCACAAAGCAGTTACAGGGGAAACTTGCAGCTCCCAGATTCAGGAACATCGAGCCCAAGTTCAGTAGCTTACTCTGATGATTTTAG
TGAAATTGAGGGTGGCTTGCAAGGATGCTCATTACTGCATCTTGCATGCCATACTGGTGATCTGGGTATGTTAGAGTTATTATTGCAGTATGGTGCAGATGTAAATTCCCAAGATTATCATGGAAGATCGCCTCTTCATCATTGCATTTTGAAAGGGAAGAATCAATTTGCAAAGCTGCTGATAAGAAGGGGTGCGAACC
CAATTATTGTTGATGGGAGAGGTAAAACGCCATTACAGAGAGCAATGGAGATAGGTGCTATTACAGATGATGAGCTTTTCCTTCTCCTATCTGAACATAGCAGATAAAGCATTGTAAGCTCTGTTCAAGGGTAGACAAAAAAAGTGGCTTATGTTCCCAAAGCCTTGTGTATTATAGGGTTCGGTTGTTCATTTATGGTT
GGATATCTTGCTTTTTCATATGAAGTCCATACAACACTTGGGAGTTGCTTGTAAGCATCTTGCAACAAATGCGTCATGTAACCTTACTGAAATGTGGTATGATTATGTTGTAAACTTATCTGGAAGTATATCTGTAGAGCCTATATTTATTATCTTTGTCCAATGGATGTATTGTCTTCTTTTTATATCGAGTGTTTGCA
GTTCCATTATTACACTTTGCTGGGCTTGTTAACAATTCAATTATAATGTTGTTTCCTACCTATATCTGACATGAAATGCATGTCCCTCA
>TRINITY_DN134031_c1_g2_i9 from sample A1 / Example unspliced isoform:CTTTTGATTGTTCTTTGAGCGGAGTTCAAGTTGGCTTCCACCTGAAAGGGCAGAGTAATTGTTCATTACTAGTGGAATAGCTTAAGGTCAAGGAAAAATTGTTCCAGTATGATACTAGATTTCATCAAGAATTAGGAAACACTTGGAATCCTACTCCAAAAATCAAACTTCACCAACTATGGGTATACTTTTTTGTTAAA
TTAGAATAGGAACAGGTAGAAATTGGACTAATTGATCATGGTTATGAGTCCTGAAATATTAGTTGAGATGAGTAAAATGACAAATTTGTTTTTTCATTGACACCTCTAATCCTGTGCCTTTGCTACAGGCGCGTGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAAAAGAGGATTTG
CACAATGCAAGGGCATCATTTGAACAAGCCCGCTTCAATCTAGTATGTGACTACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCAC
AGCAGTCCAGGGAAAGGACAAGTTATGAGCAAGCTGCTCTTGCAGAAAGGATGCAGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCTACTTCTGGGGATGGTATTCAGGCCGTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAG
gtacatgttctattacagctttgttgatcttattttaggattggcatatcaccttctttgcatagaacaaagaatactggttacatattgcagttgttactacaaaactttttatcgtagatattagatcagaggagtggtattctgattaaaaatttgaaggtcattatagttgtgtgtgtgtcttagcgtctttgtaa
ataatttaaatctcgcaatgcttaatgatttagGTGCAAACAATAAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGTAGGTCATCATTGTTGTTGTCAAGAGGGAGTATA
TGCTCATGAAAGTTTCCCAATCTGCTTTAATAATTTCAAAAATCTTTTCTCTAGCATAGCTAGCATTCATAATGCAAGTTCTTTGTGTTAATTATTTGTCAGGGAGCTGCAAACCAGCTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCTCACCATGCGACACC
CCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCATTAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATCACTTTTGAATT
CTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGATTTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTATGCAGGGCGTT
TTGGCAGCTGAACAACAGGAGAGGCCCATTGAGATACTGCGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGT
Intron 2 GTAGGTCATC ... TATTTGTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.23 | 30 | 10 | 16 |
| A2 | 20.51 | 31 | 7 | 9 |
| A3 | 18.18 | 27 | 7 | 5 |
| A4 | 17.65 | 28 | 9 | 3 |
| A5 | 29.63 | 19 | 4 | 12 |
| A6 | 21.57 | 20 | 8 | 3 |
| A7 | 20.66 | 48 | 16 | 9 |
| A8 | 22.86 | 27 | 11 | 5 |
| A9 | 20 | 40 | 8 | 12 |
| A10 | 11.43 | 31 | 5 | 3 |
>TRINITY_DN134031_c1_g2_i2 from sample A1 / Example spliced isoformATAGCTGTTGGAGGGCCTGTGATGACAAAGTTCACTATTGCTCTGCGTGAGATAGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTAAATGACAGGTTGATGCAGTTTGTGAATGTCGATCTACAAGATGTAAAGGAGGCCCGGAAGCGCTTTGACAAAGCTACTCTTCATTATGATCAGGCGCGTGA
AAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGACCACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGC
AGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCACAGCAGTCCAGGGAAAGGACGAGTTATGAGCAAGCTGCTCTTGCAGAAAGGATGCAGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCTACTTCTGGGGATGGTATTCAGGCC
GTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAGGTGCAAACAATAAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGGAGCTGC
AAACCAGCTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCTCACCATGCGACACCCCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCAT
TAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATCACTTTTGAATTCTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGAT
TTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTATGCAGGGCGTTTTGGCAGCTGAACAACAGGAGAGGCCCATTGAGATACTGCGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCT
GGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACACTGGATGTAAAGGTTTGGGAACCTTCTGTTATTAATTTGTTCCAGTCCCTTGGTAATATGTATGCAAATTCAATATGGGAAGAGCTTTTAGAAATTGGGCAGGACAGTGTTGATTGCAATA
GCAGACTAGATGGCCATGAACATAAGGCAAATTGCATATCCATCAACAAACCAAGCGCTAGGGATACTCTTTCAACTAAGGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGCGATTAGTATCAAAGGAAAAATTTGATCCGGAATTACCACCATTGGATTATCGTATGTGGGATGCAGTTCAAACAAATAACAAACAA
ATGGTTTACCGTCTTCTTGTCATGTACGATGCAAATATTACAACTACTTATGAGCAGTCTAAGTCGAGCAGTTTTTCTAATTTGTTAATGGGTAGTTCAATGAATCATGATATATCACAAAGCAGTTACAGGGGAAACTTGCAGCTCCCAGATTCAGGAACATCGAGCCCAAGTTCAGTAGCTTACTCTGATGATTTTAG
TGAAATTGAGGGTGGCTTGCAAGGATGCTCATTACTGCATCTTGCATGCCATACTGGTGATCTGGGTATGTTAGAGTTATTATTGCAGTATGGTGCAGATGTAAATTCCCAAGATTATCATGGAAGATCGCCTCTTCATCATTGCATTTTGAAAGGGAAGAATCAATTTGCAAAGCTGCTGATAAGAAGGGGTGCGAACC
CAATTATTGTTGATGGGAGAGGTAAAACGCCATTACAGAGAGCAATGGAGATAGGTGCTATTACAGATGATGAGCTTTTCCTTCTCCTATCTGAACATAGCAGATAAAGCATTGTAAGCTCTGTTCAAGGGTAGACAAAAAAAGTGGCTTATGTTCCCAAAGCCTTGTGTATTATAGGGTTCGGTTGTTCATTTATGGTT
GGATATCTTGCTTTTTCATATGAAGTCCATACAACACTTGGGAGTTGCTTGTAAGCATCTTGCAACAAATGCGTCATGTAACCTTACTGAAATGTGGTATGATTATGTTGTAAACTTATCTGGAAGTATATCTGTAGAGCCTATATTTATTATCTTTGTCCAATGGATGTATTGTCTTCTTTTTATATCGAGTGTTTGCA
GTTCCATTATTACACTTTGCTGGGCTTGTTAACAATTCAATTATAATGTTGTTTCCTACCTATATCTGACATGAAATGCATGTCCCTCA
>TRINITY_DN134031_c1_g2_i9 from sample A1 / Example unspliced isoform:CTTTTGATTGTTCTTTGAGCGGAGTTCAAGTTGGCTTCCACCTGAAAGGGCAGAGTAATTGTTCATTACTAGTGGAATAGCTTAAGGTCAAGGAAAAATTGTTCCAGTATGATACTAGATTTCATCAAGAATTAGGAAACACTTGGAATCCTACTCCAAAAATCAAACTTCACCAACTATGGGTATACTTTTTTGTTAAA
TTAGAATAGGAACAGGTAGAAATTGGACTAATTGATCATGGTTATGAGTCCTGAAATATTAGTTGAGATGAGTAAAATGACAAATTTGTTTTTTCATTGACACCTCTAATCCTGTGCCTTTGCTACAGGCGCGTGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAAAAGAGGATTTG
CACAATGCAAGGGCATCATTTGAACAAGCCCGCTTCAATCTAGTATGTGACTACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCAC
AGCAGTCCAGGGAAAGGACAAGTTATGAGCAAGCTGCTCTTGCAGAAAGGATGCAGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCTACTTCTGGGGATGGTATTCAGGCCGTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAG
GTACATGTTCTATTACAGCTTTGTTGATCTTATTTTAGGATTGGCATATCACCTTCTTTGCATAGAACAAAGAATACTGGTTACATATTGCAGTTGTTACTACAAAACTTTTTATCGTAGATATTAGATCAGAGGAGTGGTATTCTGATTAAAAATTTGAAGGTCATTATAGTTGTGTGTGTGTCTTAGCGTCTTTGTAA
ATAATTTAAATCTCGCAATGCTTAATGATTTAGGTGCAAACAATAAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGgtaggtcatcattgttgttgtcaagagggagtata
tgctcatgaaagtttcccaatctgctttaataatttcaaaaatcttttctctagcatagctagcattcataatgcaagttctttgtgttaattatttgtcagGGAGCTGCAAACCAGCTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCTCACCATGCGACACC
CCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCATTAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATCACTTTTGAATT
CTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGATTTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTATGCAGGGCGTT
TTGGCAGCTGAACAACAGGAGAGGCCCATTGAGATACTGCGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGT
Intron 3 GTACATGTTC ... AATGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.92 | 45 | 14 | 7 |
| A2 | 14.58 | 41 | 7 | 7 |
| A3 | 12.78 | 58 | 12 | 5 |
| A4 | 20.47 | 68 | 17 | 18 |
| A5 | 22.45 | 19 | 5 | 6 |
| A6 | 15.29 | 36 | 6 | 7 |
| A7 | 17.24 | 108 | 31 | 14 |
| A8 | 22.92 | 37 | 14 | 8 |
| A9 | 23.5 | 70 | 32 | 11 |
| A10 | 14.81 | 46 | 6 | 10 |
>TRINITY_DN109820_c0_g2_i3 from sample A4 / Example spliced isoformTCAAATTTCAATGCCGATTAGCGACGGAGTCAATGGTCTAAGGTTTAAGAAACATTTGCCATGCCCGCCCAATATGCTTAAGCTGACTTTGGAAGCCCTGGTCAATGACAAAGCAAACCATAATCACACTCTCATGGGGAATCGAGCCCGAAGGGAAGAATATTGCCACCAGCTTTACCAGTCGGCGATTGCTGAATGCT
TATTTATTCAAAGCTGCAAGCTGCTAACAACGGATCCCGATCGTTGTCCGCAAACAAAGGGATCGTTGTCCTCAAACAAAGGGACGAAGTCCAAGGCCAGATCAACAAGTGGTCTTACCCTGTGAAATGAGACAAAATCCCAAATTGAAAAGACCGTTTCTATCTTTCGGCCACGTGGGTTGCGTGTCTGGACTGGACTG
GACTGAATCCCCGACGCGAGAACCGGATTGCGCTGCGGGATTCTTTAACATGTGGCGCTCAGTCATTGAGGGAAGCTGCAGAGATTGTTGTCGCTGGATCGGTTGCAGTACAGTCGCGGCGTTTGCTCTGCTTGCAGGGATACGGGTCTTCCAGTATAAGATTGGTATTTAGGGCATCGAGGGCGAACAATGCCCTTAAA
TTTTGGGACATTTCAATAAGGGCTGCAGAGATTGAGGGGCATTCCCTGCTCAAAGGTTCCGTTGAGGTCAGCAGCCATGAATTTGGGGAGGCTAGACGATTCGCCTATGTTCCGCAGGCAGGTACAAGTATCGGAGGAAAGTGCAGAGGTTTTAAGGGAACGCTGCCAGAAGTTTTACAAAGGATGTAGAAAATATACTG
AAGGTCTTGGGGAAGCTTATGATGGAGACATTGCTTTTGCAAGTTCCTTAGAAATGTTTGGAGGGGGACATGATGACCCTATCAGTATAGCTGTTGGAGGGCCTGTGATGACAAAGTTCACTATTGCTCTGCGTGAGATAGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTAAATGACAGGTTGATG
CAGTTTGTGAATGTCGATCTACAAGATGTAAAGGAGGCCCGGAAGCGCTTTGACAAAGCTACTCTTCATTATGATCAGGCGCGTGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGTATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGACTAC
TCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCACAGCAGTCCAGGGAAAGGACGAATTATGAGCAAGCTGCTCTTGCAGAAAGGATGC
AGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCTACTTCTGGGGATGGTATTCAGGCCGTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAGGTGCAAACAATAAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGT
GATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGGAGCTGCAAACCAGCTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCCCACCATGCGACACCCCAGGATGAGAAGTCTGTGACACA
TCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCATTAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATCACTTTTGAATTCTCACATGCCTGAACAAGTGGGTT
ATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGATTTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTATGCAGGGCGTTTTGGCAGCTGAACAACAGGAGAGG
CCCATTGAGATACTGCGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACACTGGATGTAAAGGTTTGGGAACCTTCTGTTATTAA
TTTGTTCCAGTCCCTTGGTAATATGTATGCAAATTCAATATGGGAAGAGCTTTTAGAAATTGGGCAGGACAGTGCTGATTGCAATAGCAGACTAGATGGCCATGAACATAAGGCAAATTGCATATCCATCAACAAACCAAGCGCTAGGGATACTTTTTCAACTAAGGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGC
GATTAGTATCAAAGGAAAAATTTGATCCGGAATTACCACCATTGGATTATCGTATGTGGGATGCAGTTCAAACAAATAACAAACAAATGGTTTACCGTCTTCTTGTCATGTACGATGCAAATATTACCACTACTTATGAGCAGTCTAAGTCGAGCAGTTTTTCTAATTTGTTAATGGGTAGTTCAATGAATCATGATATA
TCACAAAGCAGTTACAGGGGAAACTTGCAGCTCCCAGATTCAGGAACATCGAGCCCAAGCTCAGTAGCTTACTCTGATGATTTAAGTGAAATTGAGGGTGGCTTGCAAGGATGCTCATTACTGCATCTTGCATGCCATACTGGTGATCTGGGTATGTTAGAGTTATTATTGCAGTATGGTGCAGATGTAAATGCCCAAGA
TTATCATGGAAGATCGCCTCTTCATCATTGCATTTTGAAAGGGAAGAATCAATTTGCAAAGCTGCTGATAAGAAGGGGTGCGAACCCAATTATTGTTGATGGGAGAGGTAAAACGCCATTACAGAGAGCAATGGAGATAGGTGCTATTACAGATGATGAGCTTTTCCTTCTCCTATCTGAACATAGCAGATAAAGCATTG
TAAGCTCTGTTCAAGGGTAGACAAAAAAAGTTGCTTATGTTCCCAAAGCCTTGTGTATTATAGGGTTCGGTTGTTCATTTATGGTTGGATATCTTGCTTTTTCATATGAAGTCCATACAACACTTGGGAGTTGCTTGTAAGCATCTTGCAATAAATGCGTCATGTAACCTTACTGAAATGTGGTATGATTATGTTGTAAA
CTTATCTGGAAGTATATCTGTAGAGCCTATATTTATTATCTTTGTCCAATGGATGTATTGTCTTCTTTTTATATCGAGTGTTTGCAGTTCCATTATTACACTTTGCTGGGCTTGTTAACAATTAAATTATAATGTTGTTTCCTAC
>TRINITY_DN109820_c0_g2_i11 from sample A4 / Example unspliced isoform:TCAAATTTCAATGCCGATTAGCGACGGAGTCAATGGTCTAAGGTTTAAGAAACATTTGCCATGCCCGCCCAATATGCTTAAGCTGACTTTGGAAGCCCTGGTCAATGACAAAGCAAACCATAATCACACTCTCATGGGGAATCGAGCCCGAAGGGAAGAATATTGCCACCAGCTTTACCAGTCGGCGATTGCTGAATGCT
TATTTATTCAAAGCTGCAAGCTGCTAACAACGGATCCCGATCGTTGTCCGCAAACAAAGGGATCGTTGTCCTCAAACAAAGGGACGAAGTCCAAGGCCAGATCAACAAGTGGTCTTACCCTGTGAAATGAGACAAAATCCCAAATTGAAAAGACCGTTTCTATCTTTCGGCCACGTGGGTTGCGTGTCTGGACTGGACTG
GACTGAATCCCCGACGCGAGAACCGGATTGCGCTGCGGGATTCTTTAACATGTGGCGCTCAGTCATTGAGGGAAGCTGCAGAGATTGTTGTCGCTGGATCGGTTGCAGTACAGTCGCGGCGTTTGCTCTGCTTGCAGGGATACGGGTCTTCCAGTATAAGATTGGTATTTAGGGCATCGAGGGCGAACAATGCCCTTAAA
TTTTGGGACATTTCAATAAGGGCTGCAGAGATTGAGGGGCATTCCCTGCTCAAAGGTTCCGTTGAGGTCAGCAGCCATGAATTTGGGGAGGCTAGACGATTCGCCTATGTTCCGCAGGCAGGTACAAGTATCGGAGGAAAGTGCAGAGGTTTTAAGGGAACGCTGCCAGAAGTTTTACAAAGGATGTAGAAAATATACTG
AAGGTCTTGGGGAAGCTTATGATGGAGACATTGCTTTTGCAAGTTCCTTAGAAATGTTTGGAGGGGGACATGATGACCCTATCAGTATAGCTGTTGGAGGGCCTGTGATGACAAAGTTCACTATTGCTCTGCGTGAGATAGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTAAATGACAGGTTGATG
CAGTTTGTGAATGTCGATCTACAAGATGTAAAGGAGGCCCGGAAGCGCTTTGACAAAGCTACTCTTCATTATGATCAGGCGCGTGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGTATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGACTAC
TCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCACAGCAGTCCAGGGAAAGGACGAATTATGAGCAAGCTGCTCTTGCAGAAAGGATGC
AGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCTACTTCTGGGGATGGTATTCAGGCCGTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAGgtacatgttctattacagctttgttgatcttattttaggattggcatatcacct
tctttgcatagaacaaagaatactggttacgtattgcagttgttactacaaaactttttatcgtagatattagatcagaggagtggtattctaattaaaaatttgaaggtcattatagctgtgtgtgtgtgtcttaaagtctttgtaaatactttagatttcacaatgcttaatgattcagGTGCAAACAATAAAACAAG
GATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGGAGCTGCAAACCAGCTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCCCAC
CATGCGACACCCCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCATTAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATC
ACTTTTGAATTCTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGATTTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTA
TGCAGGGCGTTTTGGCAGCTGAACAACAGGAGAGGCCCATTGAGATACTGCGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACA
CTGGATGTAAAGGTTTGGGAACCTTCTGTTATTAATTTGTTCCAGTCCCTTGGTAATATGTATGCAAATTCAATATGGGAAGAGCTTTTAGAAATTGGGCAGGACAGTGCTGATTGCAATAGCAGACTAGATGGCCATGAACATAAGGCAAATTGCATATCCATCAACAAACCAAGCGCTAGGGATACTTTTTCAACTAA
GGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGCGATTAGTATCAAAGGAAAAATTTGATCCGGAATTACCACCATTGGATTATCGTATGTGGGATGCAGTTCAAACAAATAACAAACAAATGGTTTACCGTCTTCTTGTCATGTACGATGCAAATATTACCACTACTTATGAGCAGTCTAAGTCGAGCAGTTTTTCTA
ATTTGTTAATGGGTAGTTCAATGAATCATGATATATCACAAAGCAGTTACAGGGGAAACTTGCAGCTCCCAGATTCAGGAACATCGAGCCCAAGCTCAGTAGCTTACTCTGATGATTTAAGTGAAATTGAGGGTGGCTTGCAAGGATGCTCATTACTGCATCTTGCATGCCATACTGGTGATCTGGGTATGTTAGAGTTA
TTATTGCAGTATGGTGCAGATGTAAATGCCCAAGATTATCATGGAAGATCGCCTCTTCATCATTGCATTTTGAAAGGGAAGAATCAATTTGCAAAGCTGCTGATAAGAAGGGGTGCGAACCCAATTATTGTTGATGGGAGAGGTAAAACGCCATTACAGAGAGCAATGGAGATAGGTGCTATTACAGATGATGAGCTTTT
CCTTCTCCTATCTGAACATAGCAGATAAAGCATTGTAAGCTCTGTTCAAGGGTAGACAAAAAAAGTTGCTTATGTTCCCAAAGCCTTGTGTATTATAGGGTTCGGTTGTTCATTTATGGTTGGATATCTTGCTTTTTCATATGAAGTCCATACAACACTTGGGAGTTGCTTGTAAGCATCTTGCAATAAATGCGTCATGT
AACCTTACTGAAATGTGGTATGATTATGTTGTAAACTTATCTGGAAGTATATCTGTAGAGCCTATATTTATTATCTTTGTCCAATGGATGTATTGTCTTCTTTTTATATCGAGTGTTTGCAGTTCCATTATTACACTTTGCTGGGCTTGTTAACAATTAAATTATAATGTTGTTTCCTAC
Intron 4 GTATAATGTG ... GGTGTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90 | 1 | 12 | 6 |
| A2 | 80 | 1 | 4 | 4 |
| A3 | 75 | 2 | 8 | 4 |
| A4 | 100 | 0 | 2 | 0 |
| A5 | 100 | 0 | 4 | 4 |
| A6 | 42.86 | 4 | 1 | 5 |
| A7 | 33.33 | 5 | 2 | 3 |
| A8 | 70 | 3 | 6 | 8 |
| A9 | 20 | 4 | 0 | 2 |
| A10 | 50 | 4 | 2 | 6 |
>TRINITY_DN48178_c1_g3_i3 from sample A10 / Example spliced isoformAATTGTTCATTAATAGTGGAATAGCTTAAGGTCATGGAAAAATTGTACCAGTATGATACTAGATTTCATCAAGAATTAGGAAACACTTGGAATCCTACTCCAAAAATCAAAATTCACCAACTATGGGTATACTTTTTTGTTAAATTAGAATAGGAACAGGTAGAAATTGGACTAATTGATCATGGTTATGAGTCCTGAAA
TATTAGTTGAGATGAGTAAAATGACAAATTTGGTTTTTCATTGACACCTCTAATCCTATGCCTTCACCACAGGCGCGTGAAAAGTTTGTCATTGAGAAAAAGAACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTGCGCAATGCAAGGGCAACATTTAAACAATCCCACTTCAATCTAGTGACTACTCTTTCAA
ACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACACTATTTTAAGCAGGAAATGCCCCTTTTTGGCTACCTCTATTACACCTTTTTGCCCTAATTCCATCTTGTTTTCATGAGCTATATCCATGTCTTTCCAGATCAATCTATAACATTGACAGCCCAGTAGTGCCAG
CTGTGACTCTTCAAGCGTCAACTCCTCATATTCCAAGGGACAATGCATCCTCCACACAAGCTATAACAGATTTCCACTATAACAGATCCTATTGAAGAAGAGCCTAGTTGCAACAGACAGGTGGCATTCCAGCTGTTGAGTCTGTTGATCCAATTGCTATCGGGACAGCAACATCCTTCAGAATCAACAACACTATTCAA
CACGTTGTATCAGTTAGCTGTAACTGCGCAGCATGAAGAACATAGATCTTCATTGCTGTGCGATTTTTGTGGATCTGAAGTTGTCTTTCTTTTGTATAAATTCCAGAAGGCTCTCATAGCCTGGGGTTGGACAATTACC
>TRINITY_DN48178_c1_g3_i4 from sample A10 / Example unspliced isoform:AATTGTTCATTAATAGTGGAATAGCTTAAGGTCATGGAAAAATTGTACCAGTATGATACTAGATTTCATCAAGAATTAGGAAACACTTGGAATCCTACTCCAAAAATCAAAATTCACCAACTATGGGTATACTTTTTTGTTAAATTAGAATAGGAACAGGTAGAAATTGGACTAATTGATCATGGTTATGAGTCCTGAAA
TATTAGTTGAGATGAGTAAAATGACAAATTTGGTTTTTCATTGACACCTCTAATCCTATGCCTTCACCACAGGCGCGTGAAAAGTTTGTCATTGAGAAAAAGAACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTGCGCAATGCAAGGGCAACATTTAAACAATCCCACTTCAATCTAGTGACTACTCTTTCAA
ACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACACTATTTTAAGCAGGAAATGCCCCTTTTTGGCTACCTCTATTACACCTTTTTGCCCTAATTCCATCTTGTTTTCATGAGCTATATCCATGTCTTTCCAGATCAATCTATAACATTGACAGgtataatgtgttat
tactttatttgtttttatgcctaagattgttaaagattatggatcttagtccttggtttatactagtttatgtgacttcatttagccaaggtctaaaagcacaggtgtatcagCCCAGTAGTGCCAGCTGTGACTCTTCAAGCGTCAACTCCTCATATTCCAAGGGACAATGCATCCTCCACACAAGCTATAACAGATTT
CCACTATAACAGATCCTATTGAAGAAGAGCCTAGTTGCAACAGACAGGTGGCATTCCAGCTGTTGAGTCTGTTGATCCAATTGCTATCGGGACAGCAACATCCTTCAGAATCAACAACACTATTCAACACGTTGTATCAGTTAGCTGTAACTGCGCAGCATGAAGAACATAGATCTTCATTGCTGTGCGATTTTTGTGGA
TCTGAAGTTGTCTTTCTTTTGTATAAATTCCAGAAGGCTCTCATAGCCTGGGGTTGGACAATTACC
Intron 5 GTATATTCAT ... GTTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.7 | 13 | 1 | 0 |
| A2 | 33.33 | 6 | 3 | 3 |
| A3 | 23.81 | 8 | 4 | 1 |
| A4 | 28.21 | 14 | 6 | 5 |
| A5 | 22.22 | 7 | 3 | 1 |
| A6 | 20 | 74 | 13 | 24 |
| A7 | 12.5 | 77 | 7 | 15 |
| A8 | 15.71 | 118 | 21 | 23 |
| A9 | 17.12 | 92 | 12 | 26 |
| A10 | 21.99 | 55 | 17 | 14 |
>TRINITY_DN46324_c2_g2_i1 from sample A8 / Example spliced isoformCTTAAGGTCAATCCCCTGGGCAAGCTTCCTCTATTGCATGCCTCATTCAATGTCCCTACCGGTCTTAGGCATCATAATCAACACCAACATATTTACACTGGGTACCATCTATAAAATGCAGGTGCGTGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTACGCAGTG
CAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGACTACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGGGTACGAGTTACTGCATCAAATGGAGCCATACATTCACCAGGTTTTGACATATGCACAGCAGTCCAGG
GAAAGGACGAATTATGAGCAAGCTGCTCTTGCAGAAAGGATGCAGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCCACTTCTGGGGATGGTATTCAGGCCGTTGGCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAGGTGCAAACAAT
AAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGGAGCTGCAAACCAACTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTT
CTTCCCACCATGCGACACCCCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCATTAAAGATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTG
ATTGCATCACTTTTGAATTCTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGATTTTGAACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGT
CAGAGCTATGCAGGGCGTTTTGGCAGCTGAACAACAGGAGAGGCCCCTTGAGATACTACGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGTATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGAT
CTCTAACACTGGATGTAAAGGTTTGGGAACCTTCTGTTATTAATTTGTTCCAGTCCCTTGGTAATATGTATGCAAATTCAATATGGGAAGAGCTTTTAGAAATTGGGCAGGACAGTGTTGATTGCAATAGCAGACTAGATGGCCATGAACATAAGGCAAATTGCATATCCATCAACAAACCAAGCGCTAGGGATACTCTT
TCAACTAAGGAGAAGTTTATCCAGTCAAAGTATGCTGAAAAGCGATTAGTATCAAAGGAAAAATTTGATCCGGAATTACCACCATTGGATTATCGTATGTGGGATGCAGTTCAAACAAATAACAAACAAATGGTTTACCGTCTTCTTGTCATGTACGATGCAAATATTACAACTACTTATGAGCAGTCTAAGTCGAGCAG
TTTTTCTAATTTGTTAATGGGTAGTTCAATGAATCATGATATATCACAAAGCAGTTACAGGGGAAACTTGCAGCTCCCAGATTCAGGAACATCGAGCCCAAGTTCAGTAGCTTACTCTGATGATTTTAGTGAAATTGAGGGTGGCTTGCAAGGATGCTCATTACTGCATCTTGCATGCCATACTGGTGATCTGGGTATGT
TAGAGTTATTATTGCAGTATGGTGCAGATGTAAATTCCCAAGATTATCATGGAAGATCGCCTCTTCATCATTGCATTTTGAAAGGGAAGAATCAATTTGCAAAGCTGCTGATAAGAAGGGGTGCGAACCCAATTATTGTTGATGGGAGAGGTAAAACGCCATTACAGAGAGCAATGGAGATAGGTGCTATTACAGATGAT
GAGCTTTTCCTTCTCCTATCTGAACATAGCAGATAAAGCATTGTAAGCTCTGTTCAAGGGTAGACAAAAAAAGTTGCTTATGTTCCCAAAGCCTTGTGTATTATAGGGTTCGGTTGTTCATTTATGGTTGGATATCTTGCTTTTTCATATGAAGTCCATACGACACTTGGGAGTTGCTTGTAAGCATCTTGCAACAAATG
CGTCATGTAACCTTACTGAAATGTGGTATGATTATGTTGTAAACTTATCTGGAAGTATATCTGTAGAGCCTATATTTAGTATCTTTGTCCAATGGATGTAATGTCTTCTTTTTATATCGAGTGTTTGCAGTTCCA
>TRINITY_DN46324_c2_g2_i10 from sample A8 / Example unspliced isoform:CTGTTGGAGGGCCTGTGATGACAAAGTTCACTATTGCTCTGCGTGAGATAGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTAAATGACAGGTTGATGCAGTTTGTGAATGTCGATCTACAAGATGTAAAGGAGGCCCGGAAGCGCTTTGACAAAGCTACTCTTCATTATGATCAGGCGCGTGAAAAG
TTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGACCACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGG
GTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTTTTGACATATGCACAGCAGTCCAGGGAAAGGACGAATTATGAGCAAGCTGCTCTTGCAGAAAGGATGCAGGAGTTTAGAAGGCAGATAGAACAAGAAAGTCAGCGCTCATTTAATGATGTGGAGGCTTCCACTTCTGGGGATGGTATTCAGGCCGTTG
GCAGGAGTTCTCATAAAATGATTGAAGCAGTTATGCAATCTACTGCAAAAGGGAAGGTGCAAACAATAAAACAAGGATACTTGTTGAAACGATCTTCAAATTTGAGGGGTGATTGGAAGAGGAGGTTTTTTGTACTTGATAGTCGTGGAATGCTGTATTATTACCGCAAACAATGGGGCAAGCCAGTGGGAGCTGCAAAC
CAACTGGCAATTCAGAAAGCTTCCCATTCATCTGAGCATGTCACTGGTTTGCTTGGACGGTTACTTTCTTCCCACCATGCGACACCCCAGGATGAGAAGTCTGTGACACATCATACCGTGAATCTTCTTACATCTACCATAAAGGTGGATGCAGAGCAAACAGATTTACGTTTTTGTTTCAGGATAATTTCTCCATTAAA
GATCTATACTCTACAGGCAGAGAATGCTGTAGATCGAATGGACTGGATTGACAAAATTACTGCAGTGATTGCATCACTTTTGAATTCTCACATGCCTGAACAAGTGGGTTATAGCCAGAGGGTTCCTCAAACTCTGATGGGTACTGGACACCAAGGCACACAGTGTGAAACAAACTCATTGAGTGGGTTTTCTGATTTTG
AACATTTAATGCCCGAAGAGTATACATCAGCAAGGGGTTATGCTTTCTCCTGTTATGATAATTCTGTCAGAGCTATGCAGGGCGTTTTGGCAGCTGAACAACAGGAGAGGCCCCTTGAGATACTACGAAAAGTTGCTGGTAATGATGTATGTGCAGACTGTGGTTGTCATGATCCAGATTGGGCCTCATTAAATCTGGGT
ATTTTGCTGTGCATTGAATGTTCCGGCGTTCATAGAAATCTTGGTGTTCATATTTCAAAGGTTAGATCTCTAACACTGGATGTAAAGGTTTGGGAACCTTCTGTTATTAATTTGTTCCAGTCCCTTGGTAATATGTATGCAAATTCAATATGGGAAGAGCTTTTAGAAATTGGGCAGGACAGTGTTGATTGCAATAGCAG
ACTAGATGGCCATGAACATAAGGCAAATTGCATATCCATCAACAAACCAAGCGCTAGGGATACTCTTTCAACTAAGGAGAAGTTTATCCACTCAAAGTACGCTGAAAAGCGATTAGTATCAAAGGAAAAATTTGATCCGGAATTACCACCATTGGATTATCGTATGTGGGATGCAGTTCAAACAAATAACAAACAAATGG
TTTACCGTCTTCTTGTCATGTACGATGCAAATATTACAACTACTTATGAGCAGTCTAAGTCGAGCAGTTTTTCTAATTTGTTAATGGGTAGTTCAATGAATCATGATATATCACAAAGCAGTTACAGGGGAAACTTGCAGCTCCCAGATTCAGGAACATCGAGCCCAAGTTCAGTAGCTTACTCTGATGATTTTAGTGAA
ATTGAGGGTGGCTTGCAAGGATGCTCATTACTGCATCTTGCATGCCATACTGGTGATCTGGGTATGTTAGAGTTATTATTGCAGTATGGTGCAGATGTAAATTCCCAAGATTATCATGGAAGATCGCCTCTTCATCATTGCATTTTGAAAGGGAAGAATCAATTTGCAAAGCTGCTGATAAGAAGgtatattcattttaa
ttttttggtatttattaattaaaaacacatgattaagcttgtacatctgtgctttaaatcaatccataattttatgtgaaccttgtctgtgtttttccagGGGTGCGAACCCAATTATTGTTGATGGGAGAGGTAAAACGCCATTACAGAGAGCAATGGAGATAGGTGCTATTACAGATGATGAGCTTTTCCTTCTCCTA
TCTGAACATAGCAGATAAAGCATTGTAAGCTCTGTTCAAGGGTAGACAAAAAAAGTTGCTTATGTTCCCAAAGCCTTGTGTATTATAGGGTTCGGTTGTTCATTTATGGTTGGATATCTTGCTTTTTCATATGAAGTCCATACGACACTTGGGAGTTGCTTGTAAGCATCTTGCAACAAATGCGTCATGTAACCTTACTG
AAATGTGGTATGATTATGTTGTAAACTTATCTGGAAGTATATCTGTAGAGCCTATATTTAGTATCTTTGTCCAATGGATGTAATGTCTTCTTTTTATATCGAGTGTTTGCAGTTCCA
Intron 6 GTAACTTTGA ... ATATTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.74 | 22.4 | 10.3 | 9 |
| A2 | 33.56 | 20.4 | 10.2 | 9 |
| A3 | 27.52 | 36.1 | 16.1 | 9 |
| A4 | 43.47 | 20.7 | 16.4 | 10 |
| A5 | 25.54 | 15.1 | 6 | 4 |
| A6 | 28.55 | 17.9 | 10.1 | 3 |
| A7 | 24.23 | 29.3 | 9.9 | 7 |
| A8 | 38.33 | 17 | 12.1 | 6 |
| A9 | 20.9 | 31.1 | 12.8 | 3 |
| A10 | 22.32 | 42.6 | 23.6 | 0 |
>TRINITY_DN119212_c0_g1_i10 from sample A2 / Example spliced isoformTATGGTTCTGAGTCTTAAAATATTAGTTGAGATGAGTAAAATGACAAATTTGGTTTTTCATTGACACCTCTAATCCTGTGCCTTTGCTACAGGTGCATGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTC
AATCTAGTGACCACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTCTATATATTGGACACATAGTTTCATAAATTTGTATGAAATTCAAATTATAATAA
GATATATCCTTGCTCAAAATGAATCTGCTACATCAAGTGCTTCCAACTGCTTTATTTCTACTTCATTATCCTTGAAGTATAGTTTGCGCTGATGATTGGAGCATACAAAATTCAACATTTTCTAATCCACCCATTTTGATTCCGTAGAAGACCTTATCTGATGAAATCAGTGAGTTTTATAAAGCTTTCCTTCTGAAAAA
GTGCGCCAATACTATTTGAATCACACCAAATTAAGTCCCTGAAATGCCAATGCTGCATTGAAGGGAACGCCATTACAGCATCAGATGGCACTGTCAGAGCAACTGTGATATGGATTCACTTTCTCCCGAGTCCTAATTAAGATACTGCTGAGACAAGAGTGGCCAACTTTTCACGACTAGTTATAGCGTTTCAATAGGAG
CAGGATTGTCAATGAGCGCATGTTACTTCTACATGCTCAGTAGTATGCCACTCTATGCATCTCAATTATTCCACCTCTGCCAACCTGCTCTACCAACGTCGCCAGTCTGCTAATTTATGCATAGTCCATTATCTTGAGGCTTTAATACCTAATTTTGACATCTCACGACC
>TRINITY_DN119212_c0_g1_i7 from sample A2 / Example unspliced isoform:GATTTCTGCTGCATTTAAAATTGAATTTCTTATAACTGAAGAAATAAGGTCTTTATGGAAATACTTGCTTAGTAATCTTGTCTACTTCTATTCAAGAATGTGTAAAATGACTTGAAGAAAATTGAAGGGGAAGTTTCTGTTCGAGCTGGATGTGCCATTAGCTTCATCCATTGGTGTCTATATAATATGTAGTTACAAAG
GTGAGAGTTTTTTAGGCAAATTTTTGTTAGTGCCTTCTGACGAAGTAAAGGCTTAGAAAAGGCCTCTGCAAACTTGGCTCAACAGAATCACATTTATCATTTATATATTCATTTGAAGTGCTAAAGAAATATTTATGGTTGCAAAATGATGTCTAATGTGATAGTATTAAGAGGCGCATGACAGGGAACTAGGGATATAT
CACATCTCCTTGTTATAGGCTTATAGCATATAATGCACCGGATTTGAACAGACCAAGAATTTAGGATCAGCCATTTTAATTTTTTGGTTCGTCTTTGATACAGGGCCTGTGATGACAAAGTTCACTATTGCTCTGCGTGAGATAGGGACATACAAGGAAGTTCTTCGCTCCCAGGTGGAGCATATGCTAAATGACAGGTT
GATGCAGTTTGTGAATGTCGATCTACAAGATGTAAAGGAGGCCCGGAAGCGCTTTGACAAAGCTACTCTTCATTATGATCAGGCGCGTGAAAAGTTTATGTCATTGAGAAAAAGTACAAGGATGGACATTGTTTCAGAAACAGAAGAGGATTTACGCAGTGCAAGGGCAGCATTTGAACAAGCCCGCTTCAATCTAGTGA
CCACTCTTTCAAACATTGAGGCCAAGAAAAAATTTGAATTCTTGGAAGCTGTGAGTGGAACAATGGATGCCCATCTACGCTATTTTAAGCAGgtaactttgaaaaggtgataatgcagttgccaggatgatttatattcaaaacatgacactgtacttacctgaatatcgactgcttctgttgaaggtgtccactgattg
caatatttgtctctggaatatttgtagGGGTACGAGTTACTGCATCAAATGGAACCATACATTCACCAGGTCTATATATTGGACACATAGTTTCATAAATTTGTATGAAATTCAAATTATAATAAGATATATCCTTGCTCAAAATGAATCTGCTACATCAAGTGCTTCCAACTGCTTTATTTCTACTTCATTATCCTTGA
AGTATAGTTTGCGCTGATGATTGGAGCATACAAAATTCAACATTTTCTAATCCACCCATTTTGATTCCGTAGAAGACCTTATCTGATGAAATCAGTGAGTTTTATAAAGCTTTCCTTCTGAAAAAGTGCGCCAATACTATTTGAATCACACCAAATTAAGTCCCTGAAATGCCAATGCTGCATTGAAGGGAACGCCATTA
CAGCATCAGATGGCACTGTCAGAGCAACTGTGATATGGATTCACTTTCTCCCGAGTCCTAATTAAGATACTGCTGAGACAAGAGTGGCCAACTTTTCACGACTAGTTATAGCGTTTCAATAGGAGCAGGATTGTCAATGAGCGCATGTTACTTCTACATGCTCAGTAGTATGCCACTCTATGCATCTCAATTATTCCACC
TCTGCCAACCTGCTCTACCAACGTCGCCAGTCTGCTAATTTATGCATAGTCCATTATCTTGAGGCTTTAATACCTAATTTTGACATCTCACGACC