NA ----> NA
Intron 1 GTATCTCTCT ... GAACCAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.08 | 60 | 8 | 15 |
| A2 | 20.6 | 79 | 21 | 20 |
| A3 | 13.17 | 89 | 11 | 16 |
| A4 | 22.49 | 81 | 18 | 29 |
| A5 | 16.19 | 44 | 5 | 12 |
| A6 | 20.27 | 348 | 76 | 101 |
| A7 | 18.63 | 474 | 108 | 109 |
| A8 | 19.85 | 531 | 102 | 161 |
| A9 | 17.38 | 442 | 89 | 97 |
| A10 | 18.68 | 457 | 89 | 121 |
>TRINITY_DN47714_c0_g1_i10 from sample A10 / Example spliced isoformCTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGAGACAGAAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATC
CCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGTCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACC
AATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAGATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATAT
TAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGA
TATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTT
>TRINITY_DN47714_c0_g1_i4 from sample A10 / Example unspliced isoform:CTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGgtatctctctatatttatgatatgcaagaacaagaacaagaaccagcagtttatgatatgcaagaacaagaacaagaaccagcagAGACAG
AAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGTC
ATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAGATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGT
ATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTTAAGTGTTCATTAGGATATTAGAAGTGTTCACTGGAGCTTACTTAGGATATTGAT
ATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTT
TTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTT
Intron 2 GTTATGATGC ... TTGGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.85 | 3 | 3 | 4 |
| A2 | 9.09 | 15 | 0 | 3 |
| A3 | 52 | 6 | 9 | 4 |
| A4 | 33.33 | 6 | 4 | 2 |
| A5 | 39.13 | 7 | 6 | 3 |
| A6 | 25 | 21 | 2 | 12 |
| A7 | 19.73 | 59 | 18 | 11 |
| A8 | 29.87 | 54 | 19 | 27 |
| A9 | 14.75 | 52 | 7 | 11 |
| A10 | 15.79 | 48 | 7 | 11 |
>TRINITY_DN47714_c0_g1_i1 from sample A10 / Example spliced isoformCTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGGTATCTCTCTATATTTATGATATGCAAGAACAAGAACAAGAACCAGCAGGTATCTCTCTATATTTATGATATGCAAGAACAAGAACAAGAA
CCAGCAG
>TRINITY_DN47714_c0_g1_i6 from sample A10 / Example unspliced isoform:CTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGGTATCTCTCTATATTTATGATATGCAAGAACAAGAACAAGAACCAGCAGGTATCTCTCTATAgttatgatgctttgccatgaccaatcttt
aaaatgcaagaacaagaaccagaacaggaacaagaatctttaatctttaatatgctttcccatgatatgtaagattcacaagaaccagcagatatctctctatatttatgatgctttgccatgactaatctttatatcattcaaagtagtttcaattttaattttttggatgcagTTTATGATATGCAAGAACAAGAACA
AGAACCAGCAGAGACAGAAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGA
TCCCTGCAAGGCATGTCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAGATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTA
GATTTGATAAGTTGAGTATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGT
AAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGG
GAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTT
Intron 3 GTAAGGCTTA ... TTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.51 | 33 | 9 | 7 |
| A2 | 16.13 | 26 | 2 | 8 |
| A3 | 15.15 | 42 | 9 | 6 |
| A4 | 13.98 | 40 | 12 | 1 |
| A5 | 16.67 | 5 | 1 | 1 |
| A6 | 15.32 | 47 | 12 | 5 |
| A7 | 18.56 | 79 | 17 | 19 |
| A8 | 16 | 21 | 2 | 6 |
| A9 | 11.11 | 40 | 5 | 5 |
| A10 | 13.33 | 52 | 5 | 11 |
>TRINITY_DN107061_c0_g1_i5 from sample A3 / Example spliced isoformCGCGGGGGCTATGGATCTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCG
AAGCTTACTCCCGATTATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGA
TGTGGACTCTGGTATTAACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTACAGTGGACA
GAGCTCCATCCCCAATCTTCTGGTTTAAGAATATAGTTTTTAAAACGTTTGTTGGGCAATGTTAATTTTATTTAAACCCCACTTATCTGGTTCAAGATCATGATTATTTTTTACTTGGGCAATGATTAATTTCATTTAATCCCGTCATCTGGTTTAAAATAATGTTTGCTTTTTTTGCCACCTGAAGCCTCAGTGGCAGC
AGGATTTGCCTTTTCTTTTTGATCTTCAATATACACAATGGGTTTCATGTTTTATTTTTAACTTGGGCAATCCTTAATTTCAATCGCAGAGAAGGATCAAATTCCGCCCTTTAATCTGAGGGAGCAATCTAATAATGTAGCAAAAACCCAAGCTCTAATCTGAGGGAGCTTTTTCATTATGTAGCAATCTTCCCTCCCT
>TRINITY_DN107061_c0_g1_i3 from sample A3 / Example unspliced isoform:CGCGGGGGCTATGGATCTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCG
AAGCTTACTCCCGATTATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGA
TGTGGACTCTGGTATTAACTATGATAATGgtaaggcttacaggtggttttcttctgaagaacgttttagttttagagttctgagatggttgcctcggccctcggctatgattttgtttctgtgcttgtattaataagccctttttttccttttttgcagCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGA
TTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTACAGTGGACAGAGCTCCATCCCCAATCTTCTGGTTTAAGAATATAGTTTTTAAAACGTTTGTTGGGCAATGTTAATTTTA
TTTAAACCCCACTTATCTGGTTCAAGATCATGATTATTTTTTACTTGGGCAATGATTAATTTCATTTAATCCCGTCATCTGGTTTAAAATAATGTTTGCTTTTTTTGCCACCTGAAGCCTCAGTGGCAGCAGGATTTGCCTTTTCTTTTTGATCTTCAATATACACAATGGGTTTCATGTTTTATTTTTAACTTGGGCAA
TCCTTAATTTCAATCGCAGAGAAGGATCAAATTCCGCCCTTTAATCTGAGGGAGCAATCTAATAATGTAGCAAAAACCCAAGCTCTAATCTGAGGGAGCTTTTTCATTATGTAGCAATCTTCCCTCCCT
Intron 4 GTATCTCTCT ... TTGGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.49 | 60 | 10 | 12 |
| A2 | 18.13 | 79 | 24 | 11 |
| A3 | 10.1 | 89 | 13 | 7 |
| A4 | 17.35 | 81 | 17 | 17 |
| A5 | 10.2 | 44 | 8 | 2 |
| A6 | 17.18 | 347 | 84 | 60 |
| A7 | 16.39 | 477 | 110 | 77 |
| A8 | 15.54 | 530 | 115 | 80 |
| A9 | 13.14 | 443 | 87 | 47 |
| A10 | 16.48 | 456 | 108 | 72 |
>TRINITY_DN46612_c0_g2_i3 from sample A7 / Example spliced isoformCTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACAAGAACCAGAACCAGCAGAGACAGAAAATGTGGAAACAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATC
CCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAATTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGCCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCCTGTTACC
AATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGAAGATTTGATATGTGAAATATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTATTTCTTTGAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATAT
TAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGA
TATGTAAAGTATGTCTTTTAAGTGTTCATTAGGATATTAATATGTAAGCTTACGGTATTA
>TRINITY_DN46612_c0_g2_i9 from sample A7 / Example unspliced isoform:CCAAAACCCACCAAAACCTCGAGGTGTTAGTGAGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGGAGGCTCATACATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGTTGTTAGTGAGGCTCATATTTGTTAGTGAGGCTCATATACCAAATATGGTAC
ATGATATGAACCGTTACACCAAAACCCCGAGGTGTTAGTGAAACTCGAGGTAGAGGTGTTAGTGAAGATTGGCCACTAGGATCCTATCCTAACAATTTCCAGCGTTGGCTCTACCTCAGAATCCCTGAAGCTACATCTACCAGGAGTTTCCTTCGCCCTTAAGGCCAAAAAAATTATTTACTGTTGCAGCTGGTAGGTGT
ATTCTTGTTTGGGATGTTTGAATATTGATGCAGTTTGTTTCTTTGCTTTTTTCCTTCACTGATGCAGGTTCAGACTGTGCCAGAGTTAACGGTGTTATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAA
CATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCACCCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATG
TACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAGCCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGAT
CCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGGACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGA
CAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCAAAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTG
CAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACGAAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACAAGAACCAGAACCA
GCAGgtatctctctatatttatgatatgcaagaacaagaacaagaaccagcaggtatctctctatagttatgatgctttgccatgaccaatctttaaaatgcaagaacaagaaccagaacaggaacaagaatctttaatctttaatatgctttcccatgatatgtaagattcacaagaaccagcagatatctctctatat
ttatgatgctttgccatgactaatctttatatcattcaaagtagtttcaattttaattttttggatgcagAGACAGAAAATGTGGAAACAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGAT
TTGTGGGTAATTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGCCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCCTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATA
GGGGAAGATTTGATATGTGAAATATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTATTTCTTTGAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATT
TGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTTAAGTGTTCATTAGGATATTA
ATATGTAAGCTTACGGTATTA
Intron 5 GTATCTCTCT ... GAACCAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.08 | 60 | 10 | 13 |
| A2 | 19.8 | 79 | 21 | 18 |
| A3 | 13.17 | 89 | 11 | 16 |
| A4 | 22.86 | 81 | 19 | 29 |
| A5 | 16.98 | 44 | 7 | 11 |
| A6 | 20.09 | 348 | 77 | 98 |
| A7 | 19.04 | 474 | 116 | 107 |
| A8 | 19.97 | 531 | 106 | 159 |
| A9 | 16.53 | 442 | 88 | 87 |
| A10 | 18.25 | 457 | 89 | 115 |
>TRINITY_DN47714_c0_g1_i10 from sample A10 / Example spliced isoformCTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGAGACAGAAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATC
CCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGTCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACC
AATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAGATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATAT
TAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGA
TATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTT
>TRINITY_DN47714_c0_g1_i6 from sample A10 / Example unspliced isoform:CTGATAAGGACGGACCTTCACTCTGTCTCAGATGAACATTGAGAGCCAGAAGTTTAGAATTCGTTGTTGAATTGTTGTTACCAAGTGCAATAGAATTTAGTCAGAATTTCGTTTTCTTCGTCAGAGAATGGCTCAGCTTGAAGGCAAGCTGCTCGATGTTGAAGATTCGCCAGATGCTCATCCGAAGCTTACTCCCGATT
ATCAGCTTGATATTGGTAATGGTTTGGAACCACCGGAGGAGGAGGAGGGATTGGCAACACCAGCACCAACACCGACATATGTCTCGAAGAACACTGAAAATGATGGAACCAAGCACTTAAAACAGCTGAAATTTGTAGTGCAGGACCCTGGCTACGAGGAGGAAGGTTATATTGTAGTAGACGATGTGGACTCTGGTATT
AACTATGATAATGCTGCAATTGTGCAGGATGAAGTCCTGAAAGTGTTCTCAGGATTAGACACATTCGGCACTCGTGACATTTTTAAAGGAGAGCTCAAGGATTTCAAAGCTCCCAAGCTGGCAGGAACAGATTCGACTGCGTCCCGGTCGAACTTATCTGGGCGAGACGATGGTTCAGACTGTGCCAGAGTTAACGGTGT
TATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCAC
CCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAG
CCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGG
ACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCA
AAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACG
AAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGgtatctctctatatttatgatatgcaagaacaagaacaagaaccagcaggtatctctctatagttatgatgctttgccatgaccaatcttt
aaaatgcaagaacaagaaccagaacaggaacaagaatctttaatctttaatatgctttcccatgatatgtaagattcacaagaaccagcagatatctctctatatttatgatgctttgccatgactaatctttatatcattcaaagtagtttcaattttaattttttggatgcagtttatgatatgcaagaacaagaaca
agaaccagcagAGACAGAAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGA
TCCCTGCAAGGCATGTCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAGATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTA
GATTTGATAAGTTGAGTATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGT
AAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGG
GAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTT
Intron 6 GTAGGTGTAT ... GCAGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 9 | 10 | 27 |
| A2 | 67.74 | 10 | 4 | 21 |
| A3 | 67.86 | 9 | 5 | 19 |
| A4 | 67.86 | 9 | 5 | 19 |
| A5 | 70.27 | 11 | 7.5 | 26 |
| A6 | 70 | 15 | 5 | 35 |
| A7 | 71.64 | 38 | 34 | 96 |
| A8 | 69.62 | 24 | 21 | 55 |
| A9 | 74.02 | 33 | 20.5 | 94 |
| A10 | 75 | 39 | 48 | 117 |
>TRINITY_DN41292_c0_g1_i9 from sample A8 / Example spliced isoformTATGAACCGTTACCCACCAAAACCTCCAGGTGTTAGTGAGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGGAGGCTCATACATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGTTGTTAGTGAGGCTCATATTTGTTAGTGAGGCTCATATACCAAATA
TGGTACATGATATGAACCGTTACACCAAAACCCCGAGGTGTTAGTGAAACTCGAGGTAGAGGTGTTAGTGAAGATTGGCCACTAGGATCCTATCCTAACAATTTCCAGCGTTGGCTCTACCTCAGAATCCCTGAAGCTACATCTACCAGGAGTTTCCTTCGCCCTTAAGGCCAAAAAAATTATTTACTGTTGCAGCTGAC
TGTGCCAGAGTTAACGGTGTTATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTT
GATCACGACGATGGAGCCACCCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGA
AGGAGGATTTCACGTGCCAGCCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGC
CAAGAGGCCGAATATCGTGGACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGA
AGGTGCAGAAATTGCAAGCAAAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATG
AGGGGAATGGTAAAGGGACGAAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGAACAAGAACAAGACGTAATACTTCCCGTT
>TRINITY_DN41292_c0_g1_i12 from sample A8 / Example unspliced isoform:TATGAACCGTTACCCACCAAAACCTCCAGGTGTTAGTGAGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGGAGGCTCATACATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGTTGTTAGTGAGGCTCATATTTGTTAGTGAGGCTCATATACCAAATA
TGGTACATGATATGAACCGTTACACCAAAACCCCGAGGTGTTAGTGAAACTCGAGGTAGAGGTGTTAGTGAAGATTGTAACAATTTCCAGCGTTGGCTCTACCTCAGAATCCCTGAAGCTACATCTACCAGGAGTTTCCTTCGCCCTTAAGGCCAAAAAAATTATTTACTGTTGCAGCTGgtaggtgtattcttgtttgg
gatgtttgaatattgatgcagtttgtttctttgcttttttccttcactgatgcaggttcagACTGTGCCAGAGTTAACGGTGTTATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACA
GGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCACCCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAG
ATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAGCCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCT
ACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGGACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAAT
CTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCAAAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGG
TTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACGAAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACAAGAACCAGAACCAGCAGAGACAGAA
AATGTGGAAACAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAATTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGCCAT
TGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCCTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGAAGATTTGATATGTGAAATATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTAT
TTCTTTGAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATAT
GTAAACTTAGGGTTAATTTTTGGGATTTTTTTATTGATATAACTTCATGAATAGATTTGATATGTAAAGTATCTTTGAAGTGGTC
Intron 7 GTAGGTGTAT ... ACTGTGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.77 | 13 | 10 | 30 |
| A2 | 84 | 4 | 4 | 21 |
| A3 | 72.41 | 8 | 5 | 21 |
| A4 | 86.36 | 3 | 5 | 19 |
| A5 | 77.14 | 8 | 7.7 | 27 |
| A6 | 68.97 | 18 | 5 | 40 |
| A7 | 72 | 42 | 34 | 108 |
| A8 | 71.08 | 24 | 21.3 | 59 |
| A9 | 75.56 | 33 | 20.7 | 102 |
| A10 | 73.56 | 46 | 48 | 128 |
>TRINITY_DN47714_c0_g1_i7 from sample A10 / Example spliced isoformCCAAAACCCACCAAAACCTCGAGGTGTTAGTGAGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGAAGGCTTGGAAGGGTGAAGGCTTGGAGGCTCGTATACCAAATATGGTATATGATATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGGTGTTAGTG
AGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGGAGGCTCATACATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGTTGTTAGTGAGGCTCATATTTGTTAGTGAGGCTCATATACCAAATATGGTACATGATATGAACCGTTACACCAAAACCCCGAGG
TGTTAGTGAAACTCGAGGTAGAGGTGTTAGTGAAGATTGTAACAATTTCCAGCGTTGGCTCTACCTCAGAATCCCTGAAGCTACATCTACCAGGAGTTTCCTTCGCCCTTAAGGCCAAAAAAATTATTTACTGTTGCAGCTGAGTTAACGGTGTTATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAA
GACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCCATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCACCCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGC
CCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGATTCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAGCCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAG
GAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGATAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGGACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGC
AGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAAATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCAAAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACA
AAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAATCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACGAAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGG
GCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGAGACAGAAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGAGGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGG
TAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGTCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCCTTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAG
ATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTGATATGTAAACTTAGGGTTAATTT
>TRINITY_DN47714_c0_g1_i11 from sample A10 / Example unspliced isoform:CCAAAACCCACCAAAACCTCGAGGTGTTAGTGAGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGAAGGCTTGGAAGGGTGAAGGCTTGGAGGCTCGTATACCAAATATGGTATATGATATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGGTGTTAGTG
AGCCTCATATAGGTGGAGGCTCTGATACCAAATTGAACCTCCACCCTAGGCAGGGTGGAGGCTCATACATGGTATATGATATGAACCGTTACACCAAAACCCACCAAAACCTCGAGTTGTTAGTGAGGCTCATATTTGTTAGTGAGGCTCATATACCAAATATGGTACATGATATGAACCGTTACACCAAAACCCCGAGG
TGTTAGTGAAACTCGAGGTAGAGGTGTTAGTGAAGATTGTAACAATTTCCAGCGTTGGCTCTACCTCAGAATCCCTGAAGCTACATCTACCAGGAGTTTCCTTCGCCCTTAAGGCCAAAAAAATTATTTACTGTTGCAGCTGgtaggtgtattcttgtttgggatgtttgaatattgatgcagtttgtttctttgctttt
ttccttcactgatgcaggttcagactgtgccagAGTTAACGGTGTTATTCAGTTCTTCGACTCCATCCACGCCCTTAGCATTGTTGCTCAAGACCTCGAAGACGAGACAAGTCTCCAGAGTACGTTTGTACATGTTGGTCCGGCTAAAAACATAGAGAAACAGGAAAATAGATGCACTGGAACTGGTCTGGTCTATTCCC
ATCCCAGTATTGAACCTGATGAGTTGATCACGACGATGGAGCCACCCAAAAACGACGAGGATAAAGCCGACAATGTAAATTCTGAAACTGCCCTGCCTGGTTCCTCTCGGCCTATTTCCGACGAATCGACGGAAAAAGACGATGAAAATGTACAGCTGAGAGATAATGCCCAGGAACCTGATTATGCATCACAGCAAGAT
TCTTCAGATATAGCACAGGGGCAGAAGGAGGATTTCACGTGCCAGCCAGCTACAGATGCTGATGATTTTGTGCCTCCGGTCCCTGAGAAAGGAATTATGCAGATGCCTCCTAAGGTTGAACAGAAGATCGAAACCCACATTGAGGAAGATCCCGTGTTTTCTACCATCAGAGAAAATTTCTATGATGCTGAAGCTCCTGA
TAATATGCAGAGATCCCTTGTAAGCCAAGAGGCCGAATATCGTGGACAAGACGAATTGGGGATATCAGATTCCGCAGAGGCTAAATATCGCAGACAAGGCGAGTCGCAGAGATCGGATTCCGATGAAGTTCGGTCGGGACCTCGTCCTGACAATTTGGTAATCTCTGAAGAAACTATGAAGCCTGTCGAGGAGAAAACAA
ATACTGTAGAAGGCCGGGGCGACGAAGGTGCAGAAATTGCAAGCAAAGAGCAAGAGCAATTAGAGGAGGAATCAGAAGATGAAGAGAAACAAAAATCTTATGATCATCAGAAAAGCTATACAAAAAAGATTTATGAGACAGCATCAAGTGCAGCCCAGGCGGTTGCCTTGAAGCTCGGATATGGCGCCGCAGAAGGGCAA
TCTGAAGAAACTGATGGTGTCAATGAGGGGAATGGTAAAGGGACGAAGGGCATTGTAGATCGAGCCGGCGAGGTGGTGGCCTCCTTCTTGGGCAGAAAGCACCAGGAGAAGGATGGCCAACATCAAGAACAAGAACCAGAACCAGAACCAGCAGAGACAGAAAATGTGGAAAAAGATGAACCACAATTTTGGGATGCAGA
GGCAGAGAATGTGGAAACAGCTGAAGGGCAGACACGATAGCCATCCCTGCAATGCTGGGCATCACAGAGCAAATACGCCTGGATTTGTGGGTAACTGGACTTCAACGTGGATTGTATATTTGTTAGTTTAGTGGGTGGCATGATCCCTGCAAGGCATGTCATTGCCAACTATTTTATGACCTCACTTAGCTAGTAAGCCC
TTCTTGAAGTTGTTAAGTAAGGTCATGACCCATTCTCTTGTTACCAATCCCTATGGGGCCGCTTCCCTAGTTTGGTTTTACATAGGGGGAGATTTGATATGTGAAGTATGTCTTTGGAGTGGTCACTAATTGTTTCATGAGTAGATTTGATAAGTTGAGTATTTCTTTAAAGTGCTTACTAGAGCTTCATGAGGAGATTG
ATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGA
TATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATTTGATATGTAAAGTATGTCTTTGAAGTGTTCACTGGAGCTTACTTAGGATATTGATATGTAAGCTTACGGTATTAATATGTAAACTTAGGGTTAATTTTTGGGAAATGTTTTATTGATATTAACAACATTTCTCTTGATATTATCAAACATTCTAGATT
TGATATGTAAAGTATGTCTTT