sp|Q94KE1|PMTA_ARATH ----> Probable methyltransferase PMT10

Intron 1 GTCTTGGCTG ... CTTGTCGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	30.11	67.3	27	31
A2	31.7	78.7	32	41
A3	28.73	53.3	21	22
A4	28.68	46	22	15
A5	34.92	9.3	6	4
A6	30.14	175	80	71
A7	28.21	222.7	93	82
A8	30.3	170.3	83	65
A9	29.09	235.3	108	85
A10	24.21	216	84	54

>TRINITY_DN101127_c2_g1_i12 from sample A4 / Example spliced isoform

GGGTTTGCAATGGAAAATAGGGGTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCATGGAGGGAGGGTTTGCAATGGAAAATAGGGGGTTTCTTTGGGTCCGAGAAGCCATTCAGAGAAGGCCACTGAGGGAGGTTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCA
TGGAGGGAGGGTTTGCAATGGAAATAGGGGTTTTCTTTGGGTCCAAGAAGCCATTCAGAGGAGGCCACAGAGGGAGGGTTTCCAATAGTAGAAAGGAATGCATAGCATGGAATCTTCTCTGCATCATCAGGGGGTATATTACTTCTTGAGGTAGATAGGATGTTGAGGGATGGAGGCTACTTTGTTTGGGCAGCACGGCT
AATATACAAACATGAGAAGAAGCAACAAGAAACTTGGAAAGGGGTCCTTGAAGAGCCCCGACACTTACTTAGCTATTGCTAGCTAATGCTCCTGATTTCTAAATGCATAATGCAGTGGATTGCTCGATGGATGATTTCGCGGACAACATCATGTGAATCAAAGTGTGGAGATCGCTAAGCTGTTCATAGTTTTTCAAGTG
TTTGCATAGTCTGGTTTCCTAGGAAGGTACAATGTGAGCCTAACTCATAAAACCCTGAGCGTTGGAGGTATTTAGGGTTCGGTTGTTCTTCGACAATGCCAAACGAACAAAGTTTGGGCACTACTGGAGATTCAAGTGGTGCATTAAGCACATACTATAGGAAACATGGAAACTTGTGTTTAAAAATCAGGTAATGTTTT
ATATTCTACGATTTCATTTTTACAGTGGTTAACAACTATCTTTTTGTCTTAAGCTTTTTGCTTCAAGCTTTGACCCTTCGTTACAATGTTGTTGGCAGGTGATACTTTGTGAGCGTGA

>TRINITY_DN101127_c2_g1_i5 from sample A4 / Example unspliced isoform:

GGGTTTGCAATGGAAAATAGGGGTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCATGGAGGGAGGGTTTGCAATGGAAAATAGGGGGTTTCTTTGGGTCCGAGAAGCCATTCAGAGAAGGCCACTGAGGGAGGTTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCA
TGGAGGGAGGGTTTGCAATGGAAATAGGGGTTTTCTTTGGGTCCAAGAAGCCATTCAGAGGAGGCCACAGAGGGAGGGTTTCCAATAGTAGAAAGGAATGCATAGCATGGAATCTTCTCTGCATCATCAGgtcttggctgtgattgtttcagaaatggatgcgaattctctcgttttgcaattatgatatgtggggcact
tgttctattcaaacctgtgtcagaaatccacagatctgtagttgttgagttatttatacccaaatatcaagacgtatcttgtcgaagGGGGTATATTACTTCTTGAGGTAGATAGGATGTTGAGGGATGGAGGCTACTTTGTTTGGGCAGCACGGCTAATATACAAACATGAGAAGAAGCAACAAGAAACTTGGAAAGTT
TCGTGAATGAGCCAGCATGGGTTGATCTCTGAATAGAGTATGCTATTGAATGGTTTACTTGAATGAATCCTTAATGGATTACGCCCAAACCTCTGTCTCTAACCATGAAGCCCTGATTGGTGTAGTATTCTCCTTGACCTTCACTTGTAACACTTCTGCGTTCTGAGATCTCGGGTGATCGGCCACTATTGACTCCATAC
CCACTCTGTTTCTCGTGTTCGTTTCAACATATACATCACGCACTGCGAATACCATAGATCCCTGTAGGATTTTATTAATTATGCCCTGTGCTTGACGTGCATGAAAGCCCAGTTAGTTTTGCGGTAACATATTCTTCAAAGATCCGATTTCATTTGTCTGTAAACTGACTTAATTTCTCTCTGCGATTTGATGAGAATCC
TCCAGATCCCATAAGTTTGTTAAATTTCACGTTGATCCATTTCAAATGACGTTTCCAAGAGCTGATAAATTGTAATAAACCACTTAATTGCCCTTTTGGAATCGATTGGCAGAGTATTCCTAAATCTCTCTGGCCTTTAATTTCGAATTGGGGACTGTTCTGCGCTCCCAGGTCGAGAAGGATTGTAACCTGAACTTACC
CTCTTTATGCATCACGAATTCAATGGGATAGTAGTTGATTACATTCGGTTGGTTTCATCTCTGCGTTCAGCTTTGGATTGACATTTTTTTTATATACTCAGAAATGAATTTCTTGTAGCCTCTGCGTTCGATTTGGATTGACAGGTTTTATTTTTAGAAACAAATTTGACCTTTGAAGTCGCTACGTTGAATTCAATGTG
ACGACGTCTTGTTTTTATATTCAGACTCTCTGAAAAATCTATGCAGCT

Intron 2 GTCTTGGCTG ... ATTGTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	44.76	29	27	20
A2	40.74	40	32	23
A3	41.94	27	21	18
A4	44.09	26	22	19
A5	45.45	9	6	9
A6	44.94	87	80	62
A7	44.9	100	93	70
A8	44.12	95	83	67
A9	42.45	120	108	69
A10	42.47	86	84	43

>TRINITY_DN101127_c2_g1_i8 from sample A4 / Example spliced isoform

GGGTTTGCAATGGAAAATAGGGGTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCATGGAGGGAGGGTTTGCAATGGAAAATAGGGGGTTTCTTTGGGTCCGAGAAGCCATTCAGAGAAGGCCACTGAGGGAGGTTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCA
TGGAGGGAGGGTTTGCAATGGAAATAGGGGTTTTCTTTGGGTCCAAGAAGCCATTCAGAGGAGGCCACAGAGGGAGGGTTTCCAATAGTAGAAAGGAATGCATAGCATGGAATCTTCTCTGCATCATCAGAAATGGATGCGAATTCTCTCGTTTTGCAATTATGATATGTGGGGCACTTGTTCTATTCAAACCTGTGTCA
GAAATCCACAGATCTGTAGTTGTTGAGTTATTTATACCCAAATATCAAGACGTATCTTGTCGAAGGGGGTATATTACTTCTTGAGGTAGATAGGATGTTGAGGGATGGAGGCTACTTTGTTTGGGCAGCACGGCTAATATACAAACATGAGAAGAAGCAACAAGAAACTTGGAAAGTTTCGTGAATGAGCCAGCATGGGT
TGATCTCTGAATAGAGTATGCTATTGAATGGTTTACTTGAATGAATCCTTAATGGATTACGCCCAAACCTCTGTCTCTAACCATGAAGCCCTGATTGGTGTAGTATTCTCCTTGACCTTCACTTGTAACACTTCTGCGTTCTGAGATCTCGGGTGATCGGCCACTATTGACTCCATACCCACTCTGTTTCTCGTGTTCGT
TTCAACATATACATCACGCACTGCGAATACCATAGATCCCTGTAGGATTTTATTAATTATGCCCTGTGCTTGACGTGCATGAAAGCCCAGTTAGTTTTGCGGTAACATATTCTTCAAAGATCCGATTTCATTTGTCTGTAAACTGACTTAATTTCTCTCTGCGATTTGATGAGAATCCTCCAGATCCCATAAGTTTGTTA
AATTTCACGTTGATCCATTTCAAATGACGTTTCCAAGAGCTGATAAATTGTAATAAACCACTTAATTGCCCTTTTGGAATCGATTGGCAGAGTATTCCTAAATCTCTCTGGCCTTTAATTTCGAATTGGGGACTGTTCTGCGCTCCCAGGTCGAGAAGGATTGTAACCTGAACTTACCCTCTTTATGCATCACGAATTCA
ATGGGATAGTAGTTGATTACATTCGGTTGGTTTCATCTCTGCGTTCAGCTTTGGATTGACATTTTTTTTATATACTCAGAAATGAATTTCTTGTAGCCTCTGCGTTCGATTTGGATTGACAGGTTTTATTTTTAGAAACAAATTTGACCTTTGAAGTCGCTACGTTGAATTCAATGTGACGACGTCTTGTTTTTATATTC
AGACTCTCTGAAAAATCTATGCAGCT

>TRINITY_DN101127_c2_g1_i5 from sample A4 / Example unspliced isoform:

GGGTTTGCAATGGAAAATAGGGGTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCATGGAGGGAGGGTTTGCAATGGAAAATAGGGGGTTTCTTTGGGTCCGAGAAGCCATTCAGAGAAGGCCACTGAGGGAGGTTTTTCTTTGGGTTCGAGAAGCCATTCAAAGGAGGCCACGGAGGGAGGCA
TGGAGGGAGGGTTTGCAATGGAAATAGGGGTTTTCTTTGGGTCCAAGAAGCCATTCAGAGGAGGCCACAGAGGGAGGGTTTCCAATAGTAGAAAGGAATGCATAGCATGGAATCTTCTCTGCATCATCAGgtcttggctgtgattgtttcagAAATGGATGCGAATTCTCTCGTTTTGCAATTATGATATGTGGGGCACT
TGTTCTATTCAAACCTGTGTCAGAAATCCACAGATCTGTAGTTGTTGAGTTATTTATACCCAAATATCAAGACGTATCTTGTCGAAGGGGGTATATTACTTCTTGAGGTAGATAGGATGTTGAGGGATGGAGGCTACTTTGTTTGGGCAGCACGGCTAATATACAAACATGAGAAGAAGCAACAAGAAACTTGGAAAGTT
TCGTGAATGAGCCAGCATGGGTTGATCTCTGAATAGAGTATGCTATTGAATGGTTTACTTGAATGAATCCTTAATGGATTACGCCCAAACCTCTGTCTCTAACCATGAAGCCCTGATTGGTGTAGTATTCTCCTTGACCTTCACTTGTAACACTTCTGCGTTCTGAGATCTCGGGTGATCGGCCACTATTGACTCCATAC
CCACTCTGTTTCTCGTGTTCGTTTCAACATATACATCACGCACTGCGAATACCATAGATCCCTGTAGGATTTTATTAATTATGCCCTGTGCTTGACGTGCATGAAAGCCCAGTTAGTTTTGCGGTAACATATTCTTCAAAGATCCGATTTCATTTGTCTGTAAACTGACTTAATTTCTCTCTGCGATTTGATGAGAATCC
TCCAGATCCCATAAGTTTGTTAAATTTCACGTTGATCCATTTCAAATGACGTTTCCAAGAGCTGATAAATTGTAATAAACCACTTAATTGCCCTTTTGGAATCGATTGGCAGAGTATTCCTAAATCTCTCTGGCCTTTAATTTCGAATTGGGGACTGTTCTGCGCTCCCAGGTCGAGAAGGATTGTAACCTGAACTTACC
CTCTTTATGCATCACGAATTCAATGGGATAGTAGTTGATTACATTCGGTTGGTTTCATCTCTGCGTTCAGCTTTGGATTGACATTTTTTTTATATACTCAGAAATGAATTTCTTGTAGCCTCTGCGTTCGATTTGGATTGACAGGTTTTATTTTTAGAAACAAATTTGACCTTTGAAGTCGCTACGTTGAATTCAATGTG
ACGACGTCTTGTTTTTATATTCAGACTCTCTGAAAAATCTATGCAGCT