NA ----> NA

Intron 1 GTATTGAACA ... AAGAGAGAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	52.85	116	164	96
A2	55.29	95	136	99
A3	50.67	110	137	89
A4	53.39	79	116	65
A5	58.22	75	130	79
A6	61.83	175	309	258
A7	59.04	214	359	258
A8	62.42	236	440	344
A9	54.4	176	241	179
A10	62.84	157	300	231

>TRINITY_DN135569_c2_g2_i2 from sample A1 / Example spliced isoform

AGCTTTTTCAAATTTGAATTTGGATGCTGTGACGATGCTGTGGAGGAAGCAGGAATTAGGGAGGTGATGTTTAAACTTGGTCATGTCAAGTATGTATGCGACAGAGAAGGATGATGCGATTAGATTCTGATCATCCCCAACTTCAAAAAAAGGGCGGCTGAGCAACTCAGCTGTCACTGCTCTCTCAATAATGGCTGCAA
TAAATTCCAGGCATCAAGTATTTCTTTAACATTGATTCAATGTTATTTACAACAGTTTGAAGTGATTTAGGTGGACTTGCATAGTTTACCATTTTTGAGAATTTTGTAAAGACAGACTTACAAACATATTATTTTAATAAAAATAATTATATTTTTTG

>TRINITY_DN135569_c2_g2_i4 from sample A1 / Example unspliced isoform:

AGCTTTTTCAAATTTGAATTTGGATGCTGTGACGATGCTGTGGAGGAAGCAGGAATTAGGGAGGTGATGTTTAAACTTGGTCATGTCAAGTATGTATGCGACAGAGAAGGATGATGCGATTAGATTCTGATCATCCCCAACTTCAAAAAAAGGGCGGCTGAGCAACTCAGCTGTCACTGCTCTCTCAATAATGGCTGCAA
TAAATTCCAGgtattgaacatttttttaaacaaagagagaagGCATCAAGTATTTCTTTAACATTGATTCAATGTTATTTACAACAGTTTGAAGTGATTTAGGTGGACTTGCATAGTTTACCATTTTTGAGAATTTTGTAAAGACAGACTTACAAACATATTATTTTAATAAAAATAATTATATTTTTTG

Intron 2 GCAATGATCT ... TTATTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22.47	88	23	28
A2	21.33	83	25	20
A3	19.39	79	23	15
A4	26.51	61	31	13
A5	21.93	73	29	12
A6	19.26	197	62	32
A7	19.31	211	67	34
A8	16.42	280	64	46
A9	21.79	140	43	35
A10	16.05	204	55	23

>TRINITY_DN135569_c2_g2_i7 from sample A1 / Example spliced isoform

AGCTTTTTCAAATTTGAATTTGGATGCTGTGACGATGCTGTGGAGGAAGCAGGAATTAGGGAGGTGATGTTTAAACTTGGTCATGTCAAGTATGTATGCGACAGAGGAGTATGCGATTAGATTCTGATCATCCCCAACGTCAAAGAAAGGGCGGCTGAGCAAAGGGCGGCTGAGCAACTCAGCTGTCACTGCTCTCTCAA
TAATGGCTGCAATAAATTCCAGGTATTGAACATTTTTTAAACAAAGAGAGAAGGCATCAAGTATTTCTTTAACATTGATTCAATGTTATTTACAACAGTTTGAAGTGATTTAGGTGGACTTGCATAGTTTACCATTTTTGAGAATTTTGTAAAGACAGG

>TRINITY_DN135569_c2_g2_i5 from sample A1 / Example unspliced isoform:

AGCTTTTTCAAATTTGAATTTGGATGCTGTGACGATGCTGTGGAGGAAGCAGGAATTAGGGAGGTGATGTTTAAACTTGGTCATGTCAAGTATGTATGCGACAGAGGAGTATGCGATTAGATTCTGATCATCCCCAACGTCAAAGAAAGGGCGGCTGAGCAAAGGGCGGCTGAGCAACTCAGCTGTCACTGCTCTCTCAA
TAATGGCTGCAATAAATTCCAGGTATTGAACATTTTTTAAACAAAGAGAGAAGgcaatgatctctatctttttcatatttttatttaaagtaatatttaaataaggatacatctcatatttgttttggtttgttttattttcagGCATCAAGTATTTCTTTAACATTGATTCAATGTTATTTACAACAGTTTGAAGTGAT
TTAGGTGGACTTGCATAGTTTACCATTTTTGAGAATTTTGTAAAGACAGACTTACAAACATATTATTTTAATAAAAATAATTATATTTTTTG