NA ----> NA
Intron 1 GTAAGCCAAA ... TTCTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.29 | 5 | 9 | 9 |
| A2 | 40.91 | 13 | 5 | 13 |
| A3 | 52.94 | 4 | 1 | 8 |
| A4 | 45.95 | 10 | 8 | 9 |
| A5 | 38.46 | 4 | 1 | 4 |
| A6 | 30.77 | 27 | 1 | 23 |
| A7 | 47.37 | 20 | 17 | 19 |
| A8 | 52.94 | 16 | 12 | 24 |
| A9 | 52 | 12 | 13 | 13 |
| A10 | 41.38 | 17 | 5 | 19 |
>TRINITY_DN45040_c0_g3_i2 from sample A7 / Example spliced isoformGGCTTCATGAGTTCAGCAAAGCTACTCCCCTATTTAACTCCGGACGAAGCTTTCCCACGGTTTAATCCAAGGATTAGCATCTGTAGCGTGATGGGATGAGCCATAATATAAGCTCAAACTCCACGGAAATTGAATCGGGTAATGTAAGGGCTTGTAGAACCAATTAAATTCCACGACGCGTCAATCATTAACGCGGTTTC
TATCCGGTTACAGGTTTAAACGCAGTTTTTATCAGGCAACTCCGCACAGGTTAACATAGGTATCCATCATTTCCCCGTGTGGGCTTAGGGTCCTTGGGGAAATCCAGAGTGATGGGACAATTCTTGCAGTCCCTTAACTCCGTCCGTCCATGATCTGCAACGAGCTAAGATATGACGCAAAGGTGGGCATGGCCGCCCGA
AACCAGATAACTGGCTATGCCCGGATATATGCTCCGACGATGCTCTTGCTGAGGTCAAACCAGACGATTAAGCGCCTGAGAAAACAGAGTATGATGAAGTTGAAGTGGAGAATGCTTTAACAAGGCTTGGAGTGCGTCTAACACCAACTGCTCATATCGCCATGAAATCCTTTATGGATTGATATCTTACTCGTGGTTCA
TGTGTTCAGTTTCACCCAGTTTCCAAGATTTTGATGGTCGTGGCAGTTTAACCCGGTTTATATCTCTTAGTTTCTTCGGATTTGTGTTTAAAATTACCTGCCTGGTTTATGTCGAGACAATGTTTTTTATTGAGGAATTATGCGTGTTACGATTACAGTTTTCTACAAGCGGAAGCGAGCTCGATCTTGACCCTCGACTG
TAGTCTTTGTTTAGAGAATAACCAAACCCTAGCTTATTACAGGGCAT
>TRINITY_DN45040_c0_g3_i3 from sample A7 / Example unspliced isoform:GGCTTCATGAGTTCAGCAAAGCTACTCCCCTATTTAACTCCGGACGAAGCTTTCCCACGGTTTAATCCAAGGATTAGCATCTGTAGCGTGATGGGATGAGCCATAATATAAGCTCAAACTCCACGGAAATTGAATCGGGTAATGTAAGGGCTTGTAGAACCAATTAAATTCCACGACGCGTCAATCATTAACGCGGTTTC
TATCCGGTTACAGGTTTAAACGCAGTTTTTATCAGGCAACTCCGCACAGGTTAACATAGGTATCCATCATTTCCCCGTGTGGGCTTAGGGTCCTTGGGGAAATCCAGAGTGATGGGACAATTCTTGCAGTCCCTTAACTCCGTCCGTCCATGATCTGCAACGAGCTAAGATATGACGCAAAGGTGGGCATGGCCGCCCGA
AACCAGATAACTGGCTATGCCCGGATATATGCTCCGACGATGCTCTTGCTGAGGTCAAACCAGACGATTAAGCGCCTGAGAAAACAGAGTATGATGAAGTTGAAGTGGAGAATGCTTTAACAAGGCTTGGAGTGCGTCTAACACCAACTGCTCATATCGCCATGAAATCCTTTATGGATTGATATCTTACTCGTGGTTCA
TGTGTTCAGTTTCACCCAGTTTCCAAGATTTTGATGGTCGTGGCAGTTTAACCCGGTTTATATCTCTTAGTTTCTTCGGATTTGTGTTTAAAATTACCTGCCTGGTTTATgtaagccaaaattcagtcacagttagatcttgattgcaattctagaggaaaagaaagataacctgatccaactccgaacttagagcagta
aattaatttctcattgagggagtctgagaataattttctgtatagtgattttagggtcttcgattcatattatttttttcattttgagaataaaaaataatgtttcctatttttaaatccggtccgggggttttctttccagGTCGAGACAATGTTTTTTATTGAGGAATTATGCGTGTTACGATTACAGTTTTCTACAA
GCGGAAGCGAGCTCGATCTTGACCCTCGACTGTAGTCTTTGTTTAGAGAATAACCAAACCCTAGCTTATTACAGGGCAT
Intron 2 GTTTATATCT ... TTCTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 36 | 18 | 9 |
| A2 | 28.74 | 31 | 12 | 13 |
| A3 | 16.13 | 26 | 2 | 8 |
| A4 | 26.67 | 22 | 7 | 9 |
| A5 | 21.95 | 16 | 5 | 4 |
| A6 | 21.7 | 83 | 23 | 23 |
| A7 | 28.38 | 53 | 23 | 19 |
| A8 | 25.93 | 70 | 25 | 24 |
| A9 | 24.09 | 52 | 20 | 13 |
| A10 | 21.33 | 59 | 13 | 19 |
>TRINITY_DN45040_c0_g3_i4 from sample A7 / Example spliced isoformGGCTTCATGAGTTCAGCAAAGCTACTCCCCTATTTAACTCCGGACGAAGCTTTCCCACGGTTTAATCCAAGGATTAGCATCTGTAGCGTGATGGGATGAGCCATAATATAAGCTCAAACTCCACGGAAATTGAATCGGGTAATGTAAGGGCTTGTAGAACCAATTAAATTCCACGACGCGTCAATCATTAACGCGGTTTC
TATCCGGTTACAGGTTTAAACGCAGTTTTTATCAGGCAACTCCGCACAGGTTAACATAGGTATCCATCATTTCCCCGTGTGGGCTTAGGGTCCTTGGGGAAATCCAGAGTGATGGGACAATTCTTGCAGTCCCTTAACTCCGTCCGTCCATGATCTGCAACGAGCTAAGATATGACGCAAAGGTGGGCATGGCCGCCCGA
AACCAGATAACTGGCTATGCCCGGATATATGCTCCGACGATGCTCTTGCTGAGGTCAAACCAGACGATTAAGCGCCTGAGAAAACAGAGTATGATGAAGTTGAAGTGGAGAATGCTTTAACAAGGCTTGGAGTGCGTCTAACACCAACTGCTCATATCGCCATGAAATCCTTTATGGATTGATATCTTACTCGTGGTTCA
TGTGTTCAGTTTCACCCAGTTTCCAAGATTTTGATGGTCGTGGCAGTTTAACCCGGTCGAGACAATGTTTTTTATTGAGGAATTATGCGTGTTACGATTACAGTTTTCTACAAGCGGAAGCGAGCTCGATCTTGACCCTCGACTGTAGTCTTTGTTTAGAGAATAACCAAACCCTAGCTTATTACAGGGCAT
>TRINITY_DN45040_c0_g3_i3 from sample A7 / Example unspliced isoform:GGCTTCATGAGTTCAGCAAAGCTACTCCCCTATTTAACTCCGGACGAAGCTTTCCCACGGTTTAATCCAAGGATTAGCATCTGTAGCGTGATGGGATGAGCCATAATATAAGCTCAAACTCCACGGAAATTGAATCGGGTAATGTAAGGGCTTGTAGAACCAATTAAATTCCACGACGCGTCAATCATTAACGCGGTTTC
TATCCGGTTACAGGTTTAAACGCAGTTTTTATCAGGCAACTCCGCACAGGTTAACATAGGTATCCATCATTTCCCCGTGTGGGCTTAGGGTCCTTGGGGAAATCCAGAGTGATGGGACAATTCTTGCAGTCCCTTAACTCCGTCCGTCCATGATCTGCAACGAGCTAAGATATGACGCAAAGGTGGGCATGGCCGCCCGA
AACCAGATAACTGGCTATGCCCGGATATATGCTCCGACGATGCTCTTGCTGAGGTCAAACCAGACGATTAAGCGCCTGAGAAAACAGAGTATGATGAAGTTGAAGTGGAGAATGCTTTAACAAGGCTTGGAGTGCGTCTAACACCAACTGCTCATATCGCCATGAAATCCTTTATGGATTGATATCTTACTCGTGGTTCA
TGTGTTCAGTTTCACCCAGTTTCCAAGATTTTGATGGTCGTGGCAGTTTAACCCGgtttatatctcttagtttcttcggatttgtgtttaaaattacctgcctggtttatgtaagccaaaattcagtcacagttagatcttgattgcaattctagaggaaaagaaagataacctgatccaactccgaacttagagcagta
aattaatttctcattgagggagtctgagaataattttctgtatagtgattttagggtcttcgattcatattatttttttcattttgagaataaaaaataatgtttcctatttttaaatccggtccgggggttttctttccagGTCGAGACAATGTTTTTTATTGAGGAATTATGCGTGTTACGATTACAGTTTTCTACAA
GCGGAAGCGAGCTCGATCTTGACCCTCGACTGTAGTCTTTGTTTAGAGAATAACCAAACCCTAGCTTATTACAGGGCAT
Intron 3 GTAAGATAAT ... TTTCATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.27 | 16 | 6 | 1 |
| A2 | 28.57 | 20 | 8 | 4 |
| A3 | 30 | 14 | 6 | 0 |
| A4 | 58.33 | 10 | 14 | 6 |
| A5 | 38.1 | 13 | 8 | 1 |
| A6 | 33.77 | 100 | 51 | 3 |
| A7 | 31.71 | 56 | 26 | 0 |
| A8 | 36.45 | 68 | 39 | 0 |
| A9 | 35.62 | 47 | 26 | 0 |
| A10 | 21.54 | 51 | 14 | 1 |
>TRINITY_DN97771_c0_g2_i2 from sample A4 / Example spliced isoformCATGGGTATCGATCATTTCCCCATGTGGGCTTAGGGTTCTTGGGGAAATCCAGAGTGATGGACCAATGCTTGCAGTCCCTTAAATCCGTCCGTCCATGATCTGCAACGAGCTAAGATATGACGCAAAGGTGGGCATGGCCACTCGAAACCAGATAACCAGCTATGCCCGGATAGATGCTCTGACGATGCTCTTGCTGAGG
TCAAACCAGACGATTAAGCGCCTGAGAAAACAGAGGATGATGAAGTTGAAGTGGAGAATGCTTTAACAAGGCTTGCAGTGCTTCTAACACCAACTGCTCGGATCGCCATGGAATCCTTTATGGATTGATATCTTACTCGTGGTTCATGTGTTCAGTTTCACCTTGTTTCCAAGAGTCTGATGGTCGTGGCAGGTCGAGAC
AATGTTTTTATTGAGGAATTATGCGTGTTAGGATTACAGTTCTCTACAAGAGGAAGCGAGCTCGATCTTGACCCTCGACTGTAGTCTTTGTTTAGAGAATAACCAAACCCTAGCTTATTACAAGGCATTTGGATTTCCTCTATGGCGAAGGTTTGCATATGGTCGACTCCTACTTCTGGCTCTTTTCACCAGTTATTCAG
AGTTGAAACACCAAGATGGGAGAACGTAGGATCTCCCAACCTGGATGCAGCAATGGTAGCTACAACTGAAATTGCGGCACCC
>TRINITY_DN97771_c0_g2_i5 from sample A4 / Example unspliced isoform:CATGGGTATCGATCATTTCCCCATGTGGGCTTAGGGTTCTTGGGGAAATCCAGAGTGATGGACCAATGCTTGCAGTCCCTTAAATCCGTCCGTCCATGATCTGCAACGAGCTAAGATATGACGCAAAGGTGGGCATGGCCACTCGAAACCAGATAACCAGCTATGCCCGGATAGATGCTCTGACGATGCTCTTGCTGAGG
TCAAACCAGACGATTAAGCGCCTGAGAAAACAGAGGATGATGAAGTTGAAGTGGAGAATGCTTTAACAAGGCTTGCAGTGCTTCTAACACCAACTGCTCGGATCGCCATGGAATCCTTTATGGATTGATATCTTACTCGTGGTTCATGTGTTCAGTTTCACCTTGTTTCCAAGAGTCTGATGGTCGTGGCAGGTCGAGAC
AATGTTTTTATTGAGGAATTATGCGTGTTAGGATTACAGTTCTCTACAAGAGGAAGCGAGCTCGATCTTGACCCTCGACTGTAGTCTTTGTTTAGAGAATAACCAAACCCTAGCTTATTACAAGGCATTTGGATTTCCTCTATGGCGAAGgtaagataattttgggttaaatcctttggtttcattatatttctttgtta
atatcagcaatgcagttattctaattttatctccattttcatacagGTTTGCATATGGTCGACTTCCTACTTCTGGCTCTTTTCACCAG