sp|A2RVP7|TI221_ARATH ----> Mitochondrial import inner membrane translocase subunit TIM22-1
Intron 1 GTTAAATTTG ... ATTTCTGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.61 | 64 | 4 | 63 |
| A2 | 50 | 49 | 2 | 49 |
| A3 | 49.09 | 56 | 2 | 54 |
| A4 | 51.35 | 54 | 4 | 57 |
| A5 | 52.44 | 39 | 2 | 43 |
| A6 | 52.05 | 234 | 2 | 254 |
| A7 | 51.41 | 190 | 4 | 201 |
| A8 | 50.74 | 201 | 5 | 207 |
| A9 | 50.88 | 195 | 4 | 202 |
| A10 | 51.09 | 202 | 4 | 211 |
>TRINITY_DN42450_c0_g1_i4 from sample A6 / Example spliced isoformCAAGCACTAACCCATCCAAACCCTGGTCTAATAATCACCTAGGGGTTGCATATAATATCCTCGAGCTTCGCAATCTCAAGGTGCATTTAAGACCCAGGCTTATATGGGTTTGTGTTGGTGTCCATATTCAATGCACCCAGTGCATCATCTAGGTTCAAGGCACTGTTACACACAAAGTGTTAATGGATCCCCTGCCCCCA
ACTGGGGCTGCAGACACTAGAGTACCTTACTTCTTTTTGTGCGACAAGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGG
GATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGA
TGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAG
>TRINITY_DN42450_c0_g1_i7 from sample A6 / Example unspliced isoform:CAAGCACTAACCCATCCAAACCCTGGTCTAATAATCACCTAGGGGTTGCATATAATATCCTCGAGCTTCGCAATCTCAAGGTGCATTTAAGACCCAGGCTTATATGGGTTTGTGTTGGTGTCCATATTCAATGCACCCAGTGCATCATCTAGGTTCAAGGCACTGTTACACACAAAGTGTTAATGGATCCCCTGCCCCCA
ACTGGGGCTGCAGACACTAGAGTACCTTACTTCTTTTTGTGCGACAAgttaaatttggaatactggtcccattggtcaattgttgctaaatagatttctttctatgcaaattgtgatgtagtctttactaaattgagctggatctaaaataagtgatgttgcatttctgaagGAGGTGGACTTGGAATCTTCATGGGCTT
GTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTG
CTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAG
Intron 2 GTCAATCTTC ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74 | 26 | 74 | 10 |
| A2 | 69.88 | 25 | 58 | 6 |
| A3 | 63.39 | 41 | 71 | 4 |
| A4 | 71.74 | 26 | 66 | 8 |
| A5 | 65.28 | 25 | 47 | 1 |
| A6 | 73.85 | 307 | 867 | 63 |
| A7 | 69.88 | 291 | 675 | 36 |
| A8 | 74.38 | 268 | 778 | 71 |
| A9 | 73.77 | 240 | 675 | 46 |
| A10 | 71.18 | 183 | 452 | 21 |
>TRINITY_DN44418_c0_g1_i3 from sample A10 / Example spliced isoformCTTTAAAAGGAAAAAGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGG
ATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGA
TAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACT
GTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCA
GGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATT
ATGCTTCTATAGGAATTGAATATCACTTTCTGAAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTG
ATGTCTCATCTTGAGTTGTCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTCCTTGTGAGTCTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAATATTGAACCCATTTGAGATTGTTCAGGTAATAAT
TCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATGAAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTGACAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTTAGGGTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGTTGGTTTTTGGAAGATAAGTTC
AAATATCTGAATTACGATTATAGTGCAATGATCTCTCATTTTCTGTTGACTCCAGAGTCCAG
>TRINITY_DN44418_c0_g1_i2 from sample A10 / Example unspliced isoform:CTTTAAAAGGAAAAAGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGG
ATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGA
TAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACT
GTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCA
GGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATT
ATGCTTCTATAGGAATTGAATATCACTTTCTGAAGgtcaatcttctattcccaaatagtaccagttttctagcagtgattattgaggaaatttaccctttctattttggagtttcatactccctgaagctttggtccccaatgatgggcattgcaattgctgcatttgcagcttttgatagagcaacattttttattaca
gaaataagatggggatgagaggcttgcaattttggagccacgtttgttctgattccaataatttggattaaaaacagtatttgtgtatttatgcaagccagttcatttcattgaatgacttgatgcatggtattttaccatccttctggatatctaacttttgtttcactgtcttgttctcccactttttttctttctgg
atttgatgatatatcttcttatcagatttattttacagAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTT
GTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTCCTTGTGAGTCTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAATATTGAACCCATTTGAGATTGTTCAGGTAAT
AATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATATAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTGACAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTTAGGGTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGTTGGTTTTTGGAAGATAAG
TTCAAATATCTGAATTACGATTATAGTGCAATGATCTCTCATTTTCTGTTGACTCCAGAGTCCAG
Intron 3 GTCAATCTTC ... TTCTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74 | 26 | 74 | 9 |
| A2 | 70.73 | 24 | 58 | 5 |
| A3 | 63.39 | 41 | 71 | 4 |
| A4 | 71.74 | 26 | 66 | 8 |
| A5 | 65.28 | 25 | 47 | 1 |
| A6 | 72.86 | 323 | 867 | 65 |
| A7 | 67.57 | 324 | 675 | 37 |
| A8 | 72.78 | 291 | 778 | 70 |
| A9 | 72.04 | 262 | 675 | 45 |
| A10 | 69.33 | 200 | 452 | 20 |
>TRINITY_DN44418_c0_g1_i1 from sample A10 / Example spliced isoformCTTTAAAAGGAAAAAGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGG
ATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGA
TAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACT
GTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCA
GGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATT
ATGCTTCTATAGGAATTGAATATCACTTTCTGAAGATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGC
TATGAATTTTGTGATGTCTCATCTTGAGTTGTCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTCCTTGTGAGTCTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAATATTGAACCCATTTGAGATTG
TTCAGGTAATAATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATGAAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTGACAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTTAGGGTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGTTGGTTTTT
GGAAGATAAGTTCAAATATCTGAATTACGATTATAGTGCAATGATCTCTCATTTTCTGTTGACTCCAGAGTCCAG
>TRINITY_DN44418_c0_g1_i2 from sample A10 / Example unspliced isoform:CTTTAAAAGGAAAAAGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGG
ATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGA
TAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACT
GTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCA
GGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATT
ATGCTTCTATAGGAATTGAATATCACTTTCTGAAGgtcaatcttctattcccaaatagtaccagttttctagcagtgattattgaggaaatttaccctttctattttggagtttcatactccctgaagctttggtccccaatgatgggcattgcaattgctgcatttgcagcttttgatagagcaacattttttattaca
gaaataagatggggatgagaggcttgcaattttggagccacgtttgttctgattccaataatttggattaaaaacagtatttgtgtatttatgcaagccagttcatttcattgaatgacttgatgcatggtattttaccatccttctggatatctaacttttgtttcactgtcttgttctcccactttttttctttctgg
atttgatgatatatcttcttatcagATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTT
GTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTCCTTGTGAGTCTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAATATTGAACCCATTTGAGATTGTTCAGGTAAT
AATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATATAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTGACAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTTAGGGTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGTTGGTTTTTGGAAGATAAG
TTCAAATATCTGAATTACGATTATAGTGCAATGATCTCTCATTTTCTGTTGACTCCAGAGTCCAG
Intron 4 GTCAATCTTC ... TTTATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.25 | 21 | 74 | 41 |
| A2 | 65.79 | 26 | 58 | 42 |
| A3 | 62.63 | 37 | 71 | 53 |
| A4 | 69.13 | 23 | 66 | 37 |
| A5 | 60.34 | 23 | 47 | 23 |
| A6 | 69.52 | 353 | 867 | 743 |
| A7 | 65.64 | 308 | 675 | 502 |
| A8 | 70.99 | 310 | 778 | 739 |
| A9 | 68.93 | 297 | 676 | 642 |
| A10 | 62.84 | 196 | 452 | 211 |
>TRINITY_DN120065_c3_g1_i2 from sample A2 / Example spliced isoformTTTAAAAGGAAAATGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGA
TTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGAT
AAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTG
TGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAG
GCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTA
TGCTTCTATAGGAATTGAATATCACTTTCTGAAGAAATAAGATGGGGGATGAGAGGCTTGCAATTTTGGAGCCACGTTTGTTCTGATTCCAATAATTTGGATTAAAAACAGTATTTGTGTATTTATGCAAGCCAGTTCATTTCATTGAATGACTTGATGCATGGTATTTTACCATCCTTCTGGATATCTAACTTTTGTTT
CACTGTCTTGTTCTCCCACTTTTTTCTTTCTGGATTTGATGATATATCTTCTTATCAGATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTA
TGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCTTGAGTTGTCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAAAGCTGTCTGCTTTTAA
AGTATTGAACCCATTTGAGATTGTTCAGGTAATAATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATGAAAT
>TRINITY_DN120065_c3_g1_i1 from sample A2 / Example unspliced isoform:TTTAAAAGGAAAATGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGA
TTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGAT
AAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTG
TGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAG
GCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTA
TGCTTCTATAGGAATTGAATATCACTTTCTGAAGgtcaatcttctattccccaatagtaccagttttctagcagtgattattgaggaaatttaccctttctattttggagtttcatactccctgaagctttggtccccaatgatgggcattgcaattgctgcatttgcagcttttgatagagcaacattttttattacag
AAATAAGATGGGGGATGAGAGGCTTGCAATTTTGGAGCCACGTTTGTTCTGATTCCAATAATTTGGATTAAAAACAGTATTTGTGTATTTATGCAAGCCAGTTCATTTCATTGAATGACTTGATGCATGGTATTTTACCATCCTTCTGGATATCTAACTTTTGTTTCACTGTCTTGTTCTCCCACTTTTTTCTTTCTGGA
TTTGATGATATATCTTCTTATCAGATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTG
TGATGTCTCATCTTGAGTTGTCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCCATTTGAGATTGTTCAGGTAATA
ATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATGAAAT
Intron 5 GTCAATCTTC ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74 | 26 | 74 | 14 |
| A2 | 69.88 | 25 | 58 | 14 |
| A3 | 63.39 | 41 | 71 | 9 |
| A4 | 71.74 | 26 | 66 | 10 |
| A5 | 65.28 | 25 | 47 | 5 |
| A6 | 73.85 | 307 | 867 | 167 |
| A7 | 69.88 | 291 | 675 | 101 |
| A8 | 74.38 | 268 | 778 | 152 |
| A9 | 73.77 | 240 | 675 | 113 |
| A10 | 71.18 | 183 | 452 | 32 |
>TRINITY_DN98464_c0_g1_i6 from sample A4 / Example spliced isoformGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTT
GGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCC
GACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCAT
GGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTG
CAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGAAAATATCAGCTTGTTCGTT
GGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTG
ATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCC
>TRINITY_DN98464_c0_g1_i4 from sample A4 / Example unspliced isoform:GCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTT
GGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCC
GACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCAT
GGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTG
CAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGgtcaatcttctattcccaaa
tagtaccagttttctagcagtgattattgaggaaatttaccctttctattttggagtttcatactccctgaagctttggtccccaatgatgggcattgcaattgctgcatttgcagcttttgatagagcaacattttttattacagaaataagatggggatgagaggcttgcaattttggagccacgtttgttctgattc
caataatttggattaaaaacagtatttgtgtatttatgcaagccagttcatttcattgaatgacttgatgcatgatttattttacagAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCT
TTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAA
AGCTGTCTGCTTTTAAAGTATTGAACCC
Intron 6 GTGAGTTAGG ... GTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.93 | 146 | 36.3 | 11 |
| A2 | 22.13 | 158.3 | 45 | 8 |
| A3 | 20.25 | 130 | 33 | 11.3 |
| A4 | 25.2 | 137.5 | 46.3 | 5.3 |
| A5 | 18.09 | 95 | 21 | 4.7 |
| A6 | 19.92 | 965 | 240 | 99.3 |
| A7 | 19.06 | 785.3 | 185 | 98.7 |
| A8 | 19.38 | 635 | 152.7 | 64 |
| A9 | 18.37 | 758.5 | 170.7 | 75.3 |
| A10 | 20.69 | 661.8 | 172.7 | 50.7 |
>TRINITY_DN113799_c0_g2_i2 from sample A1 / Example spliced isoformTGTCCATATTCAATGCACCCAGTGCATCATCTAGGTTCAAGGCACTGTTACACACAAAGTGTTAATGGATCCCCTGCCCCCAACTGGGGTTGCAGACACTAGAGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCCAGGCAACAGTTTATATATAC
TGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAG
GCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGGTCAATCTTCTATTCCCCAATAGTACCAGTTTTCTAGCAGTGATTATTGAGGAAATTTACCCTTTCTATTTTGGAGTTTCATACTCCCTGAAGCT
TTGGTCCCCAATGATGGGCATTGCAATTGCTGCATTTGCAGCTTTTGATAGAGCAACATTTTTTATTACAGAAATAAGATGGGGATGAGAGGCTTGCAATTTTGGAGCCACGTTTGTTCTGATTCCAATAATTTGGATTAAAAACAGTATTTGTGTATTTATGCAAGCCAGTTCATTTCATTGAATGACTTGATGCATGG
TATTTTACCATCCTTCTGGATATCTAACTTTTGTTTCACTGTCTTGTTCTCCCACTTTTTTCTTTCTGGATTTGATGATATATCTTCTTATCAGATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAA
ATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCTTGAGTTGTCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGTTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTCCTTGTGAGT
CTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAATATTGAACCCATTTGAGATTGTTCAGGTAATAATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATGAAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTGACAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTTAGG
GTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGT
>TRINITY_DN113799_c0_g2_i1 from sample A1 / Example unspliced isoform:CTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTT
GATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCT
TCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGG
AATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCCAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGgtgagttagggttcacgaggtt
cttgttatttttatctttatttgagcattaaattttgaactcattatctagtggaaaactgtgctcaactcagaaacccctttttgttggttgaaaatagaacttattcatttgaggtttctgcagGCAAGGGCTAAACATGAT
Intron 7 GTCAATCTTC ... TATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74 | 26 | 74 | 10 |
| A2 | 69.88 | 25 | 58 | 6 |
| A3 | 63.39 | 41 | 71 | 4 |
| A4 | 71.74 | 26 | 66 | 8 |
| A5 | 65.28 | 25 | 47 | 1 |
| A6 | 73.86 | 306.9 | 866.9 | 63 |
| A7 | 69.88 | 291 | 675 | 35 |
| A8 | 74.36 | 268.1 | 777.7 | 71 |
| A9 | 73.76 | 240.1 | 675.1 | 45 |
| A10 | 71.18 | 183 | 452 | 21 |
>TRINITY_DN98464_c0_g1_i6 from sample A4 / Example spliced isoformGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTT
GGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCC
GACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCAT
GGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTG
CAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGAAAATATCAGCTTGTTCGTT
GGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTG
ATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCC
>TRINITY_DN98464_c0_g1_i3 from sample A4 / Example unspliced isoform:GCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTT
GGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCC
GACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCAT
GGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTG
CAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGgtcaatcttctattcccaaa
tagtaccagttttctagcagtgattattgaggaaatttaccctttctattttggagtttcatactccctgaagctttggtccccaatgatgggcattgcaattgctgcatttgcagcttttgatagagcaacattttttattacagaaataagatgggggatgagaggcttgcaattttggagccacgtttgttctgatt
ccaataatttggattaaaaacagtatttgtgtatttatgcaagccagttcatttcattgaatgacttgatgcatggtattttaccatccttctggatatctagctttcgtttcactgtcttgttctcccacttttttcgttctggatttgatgatatatcttcttatcagatttattttacagAAAATATCAGCTTGTTC
GTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAG
TTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCC
Intron 8 GTATTTTACC ... TTCTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.57 | 13 | 15 | 9 |
| A2 | 57.14 | 15 | 20 | 5 |
| A3 | 57.14 | 9 | 12 | 4 |
| A4 | 58.33 | 10 | 14 | 8 |
| A5 | 53.33 | 7 | 8 | 1 |
| A6 | 61.54 | 215 | 344 | 65 |
| A7 | 60.47 | 136 | 208 | 36 |
| A8 | 60.29 | 191 | 290 | 70 |
| A9 | 63.05 | 150 | 256 | 44 |
| A10 | 66.67 | 57 | 114 | 20 |
>TRINITY_DN98464_c0_g1_i4 from sample A4 / Example spliced isoformGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTT
GGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCC
GACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCAT
GGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTG
CAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGGTCAATCTTCTATTCCCAAA
TAGTACCAGTTTTCTAGCAGTGATTATTGAGGAAATTTACCCTTTCTATTTTGGAGTTTCATACTCCCTGAAGCTTTGGTCCCCAATGATGGGCATTGCAATTGCTGCATTTGCAGCTTTTGATAGAGCAACATTTTTTATTACAGAAATAAGATGGGGATGAGAGGCTTGCAATTTTGGAGCCACGTTTGTTCTGATTC
CAATAATTTGGATTAAAAACAGTATTTGTGTATTTATGCAAGCCAGTTCATTTCATTGAATGACTTGATGCATGATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCT
TTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAA
AGCTGTCTGCTTTTAAAGTATTGAACCC
>TRINITY_DN98464_c0_g1_i3 from sample A4 / Example unspliced isoform:GCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTATATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTT
GGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGTATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCC
GACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAAGCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCAT
GGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTG
CAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGGTCAATCTTCTATTCCCAAA
TAGTACCAGTTTTCTAGCAGTGATTATTGAGGAAATTTACCCTTTCTATTTTGGAGTTTCATACTCCCTGAAGCTTTGGTCCCCAATGATGGGCATTGCAATTGCTGCATTTGCAGCTTTTGATAGAGCAACATTTTTTATTACAGAAATAAGATGGGGGATGAGAGGCTTGCAATTTTGGAGCCACGTTTGTTCTGATT
CCAATAATTTGGATTAAAAACAGTATTTGTGTATTTATGCAAGCCAGTTCATTTCATTGAATGACTTGATGCATGgtattttaccatccttctggatatctagctttcgtttcactgtcttgttctcccacttttttcgttctggatttgatgatatatcttcttatcagATTTATTTTACAGAAAATATCAGCTTGTTC
GTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAG
TTGATCTTGAGCATATAGCTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTACTTGTGAGTCTGGTATTGCCTCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCC
Intron 9 GTCAATCTTC ... TTCTTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74 | 26 | 74 | 9 |
| A2 | 70.73 | 24 | 58 | 5 |
| A3 | 63.39 | 41 | 71 | 4 |
| A4 | 71.74 | 26 | 66 | 8 |
| A5 | 65.28 | 25 | 47 | 1 |
| A6 | 72.87 | 322.8 | 866.8 | 65 |
| A7 | 67.57 | 324 | 675 | 36 |
| A8 | 72.75 | 291.3 | 777.5 | 70 |
| A9 | 72.05 | 262 | 675.3 | 44 |
| A10 | 69.33 | 200 | 452 | 20 |
>TRINITY_DN44924_c0_g5_i3 from sample A7 / Example spliced isoformCCCAAACATTCAATTAACTCTTTACTCTAAGAAGAATCCAAAACCAAATCGAACATGATCATTCTAGAGAGCCAATAGTTGTTCAATTAACTCTTTACCCTTTAAAAAGAAAAAGGTCTCGAATATTATGGCGTCTGAGAATCGACTTACATGAGCTCCAAATAACCGCTCATGTTAGGCAAGTGCCTTTACAATCGGTA
TATCCGTGTTGAGGTCTGCTGGGTCTGTTAGTTTTGATTCCAGAGAACCCATACATTATACATATATTGAGTTTATCTACTAAAGTTGGCCGATTTAGGATTTACAGATTGAGCATAGTGGGTTCATATTTTTTTATTTACGTTTGATTAGCTTGGTCCCTGATTTCTGAAAGTTTGTCTCATTTTATTCTTCTTTGGGT
ATCCGTAAATCCACCAAATAAGTGCTTTTTCTAGCTACCCAATTGACATTTATAACCTGTTGTCTCAAAGGGTTTTGGGTTTAATATGGAACATTGAGATAAAACATATTGAGAGATACGCTCACGCAAATATTTATAAATGGCTTCCGAATCCGACCAAACGAACTCTGCTATCTCCAATGAAAGTCCTGATCAAACAA
GCTCTGCTTCCTCCAATGATGGTCCTCCAGTAAAACAGATTGAGCCACTGAAACTGCCAACGTTTGAAGAAATCCGAGGCCAAGAGATGTGGAATAACTGTGCAGTTCGCAGCGTTTTCAGTGGTGTTCTGGGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAG
ATGACTGCTAGGCAACAGTTTATATATACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGG
TCCAAAAGCTGCCTGCATTGGGTGTGCAGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTC
TGACATATTGTCCATTGTTGCAATACTACCATCGGGACAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGTTCTTCTGGTTGTGAAAT
AGAGTACATTTAATAGATACAATGCAGATTCCTTGTGAGTCTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCCATTTGAGATTGTTCAGGTAATAATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATATAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTG
GCAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTTAGGGTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGTTGGTTTTTGGAAGATAAGTTCAAATATCTGAATTACGATTATAGTGCAATGATCTCTCATTTTCTGTTGACTCCAGAGTCCAACAATTAATGATACTTTCTATTTGTAT
CTGTTTGAATTGTATTTTATCAAAATGTCATGAGCC
>TRINITY_DN44924_c0_g5_i4 from sample A7 / Example unspliced isoform:GGTGTCCATATTCAATGCACCCAGTGCATCATCTAGGTTCAAGGCACTGTTACACACAAAGTGTTAATGGATCCCCTGCCCCCAACTGGGGTTGCAGACACTAGAGAGGTGGACTTGGAATCTTCATGGGCTTGTTCTTAGGTGCTTTAGACAACCCACTTATACAAGAACAGATGACTGCTAGGCAACAGTTTATATAT
ACTGCAAAGCAGATGGGAAGTAGGAGTTGGGGTTCAGCCAAGGCGTTTGCAGTCATGGGATTGATATTTTCAGGCGTAGAATGTGCTGTTGAGAAGGCAAGGGCTAAACATGATACAACTAATACTGCAGTTGCTGGCTGTGTTACTGGTGGAACGTTATCTGCCAGAGGTGGTCCAAAAGCTGCCTGCATTGGGTGTGC
AGGCTTTGCTACTTTTTCTGTTTTGATTGAGAAATTTTTGGATAGACACGACTAATGATGGCGTCCCTTATTATGCTTCTATAGGAATTGAATATCACTTTCTGAAGgtcaatcttctattcccaaatagtaccagttttctagcagtgattattgaggaaatttaccctttctattttggagtttcatactccctgaag
ctttggtccccaatgatgggcattgcaattgctgcatttgcagcttttgatagagcaacattttttattacagaaataagatgggggatgagaggcttgcaattttggagccacgtttgttctgattccaataatttggattaaaaacagtatttgtgtatttatgcaagccagttcatttcattgaatgacttgatgca
tggtattttaccatccttctggatatctagctttcgtttcactgtcttgttctcccacttttttcgttctggatttgatgatatatcttcttatcagATTTATTTTACAGAAAATATCAGCTTGTTCGTTGGGAGATGCTATCTTGTATACTCCAGAAATGTCTGACATATTGTCCATTGTTGCAATACTACCATCGGGA
CAAATCCAACTCACTTCACTTCTTTAGTATGGTCAATTATGGTTATGTTTTAGCTTTTCTGCTATGAATTTTGTGATGTCTCATCGTGAGTTATCATATCTGAAGCTGTTCATTAATAATATGCGAGTTGATCTTGAGCATATAGTTCTTCTGGTTGTGAAATAGAGTACATTTAATAGATACAATGCAGATTCCTTGTG
AGTCTGGTATTGCCCCCACCAAAAGCTGTCTGCTTTTAAAGTATTGAACCCATTTGAGATTGTTCAGGTAATAATTCAAGGGGAAGGTGATTGAAACTTCTTGAATGATAGAAATATAATGACATCAATTGTAATTGACTAATTGTAGTTAACAGGTCAGCTGGCAGGATTACTGTCTTTGTTCAGATTCAGAGCTGTTT
AGGGTTAGGACTGTGGCCTGAACACATTAAGAGTTTCACCAAAATATATTGGGTTGGTTTTTGGAAGATAAGTTCAAATATCTGAATTACGATTATAGTGCAATGATCTCTCATTTTCTGTTGACTCCAGAGTCCAACAATTAATGATACTTTCTATTTGTATCTGTTTGAATTGTATTTTATCAAAATGTCATGAGCC