sp|A2XDG4|UBP26_ORYSI ----> Ubiquitin carboxyl-terminal hydrolase 26

Intron 1 GTGCTCAGTA ... CTGAATGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	41.08	16.5	16.1	7
A2	49.47	13.2	20.1	6
A3	34.18	11.5	8.9	3
A4	44.68	6.5	8.5	2
A5	21.54	9.1	3	2
A6	47.68	14.5	14.5	12
A7	44.54	33	34	19
A8	45.41	25.5	23	19.5
A9	39.69	14.5	10.1	9
A10	36.61	27.8	20	12

>TRINITY_DN46509_c3_g1_i18 from sample A8 / Example spliced isoform

GTGACTTGCCGTTGGCAAATAAAGAAAATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTATCTTAAACTCATTGGGTTTGAACTCCGTGACTTGCCGTTGGCAAATAAATAAAATCT
TATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCCAGACTGACTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAAATGGAGGGAGCTTTCTTCCTGAGGGAGCTTGCGGTCAATA
AGGCTCGAATGCTGAATTGGGGACGAAGTGGAGAGGGAAAGGGAAAGCAACCATCGGGGTTTTCACTATGTGATGGAACTAGAACGGTCTTTGGAGAGGTTCATAAGAGGAATTCCCCTCTATTATTAACCAGATTCCCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTTAGGCATTCAAGAAGGA
GTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTGGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGATCGGTGGAGGGAGCTTGTTGTTAAAAATGCTCAAATCATGGAATGGGAATTGGGGATTGACTTGGAGAGGAA
AAGGGAAAGCGACCATCAGGGGTTTCACTATGTTATGGAACGAGAACGGTCTTGGAAAGGTTCATCAGAGGTTCATGAGGGGAATTGAAAGGGGATAGGAACATGAATTGAAAGGGAGGGAGATAAGAGCAGAGGTTCTCTTGACAGGGACAACAAAAGGGAAAGGGATGGTTCTTATTCATAATGTGAGGGACAGCTGG
GGCTTGTCAGCCATAATAGAATTGCACTTGGCGAGCTTACCTTCAACTCCAAACTTAAACCACCAATTTGACAACATTGCTGGAGCAAATATTCATGCTACAAAGGACATTGTGGCGGCTGTTTGCAATCATGTTCTTAAGAAGGTTTAAATAATATGGAAGAATGTTTGGATGATGGCTCAGGGATTGAACATCCACAA
GACTGCAATAAAAATTACTATCATAGAGGAGCTTGCTTCAAAATTCAGCTTTCCAAGAATTTTGATTATGAGACAAAGATTGAGTGAGACTCAAGAGCTTAAATTTATAATATATGATCTAGAATACTCTATGGGATGGGATGGAAGGTAATTTCAATTTCATCTCCTTTTATTTTTTGGACACCGGGGATGAAGAGGCA
AGTATTTTAGAATTTGTTTGAGAACAACAAAAAATGAGTTAAAAAGCGTTCAAAGCAGGTTTGGGTTGGGCTTTTTTATTATTGTTATAATAACGATGATAATAATATTCGTATTTATATCATGTGACATGCACATAGGAAGTAGAAAATAAGACGAGATGAGACAAGATGGTGAAGATGAAAAATATGTGGCACAAACC
AACTTTGTGGAGTACCAACAACCTCAACTTCAACCTAAAGCTCAACATTGAACATGTAGGTGAGTACATTTTGTTGGGGTGCCTATAAAAAATAAGGTGAGATGAGACAAGATGGAGAAGATGAAGAGTATGTGGC

>TRINITY_DN46509_c3_g1_i5 from sample A8 / Example unspliced isoform:

ATGGAGGGAGCTTTCTTTCAATAAGGCTCGAATGCTGAATTGGGGACGAAGTGGAGAGGGAAAGGGAAAGCAACCATCGGGATTTTCACTATGTGATGGAACTAGAACGGTCTTTGGAGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGA
GACTTGTCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTGTAAGTATTAAACTGGATTTTATAGCTCACGGGCACCTGAAAGTATTAAACTCGATTTTGGCATACTGGCAAGTATTAAGGGTTCTTTATTTTGCATACTGGAAGCTTTCTTTTCTGACAAAAAAATTACCCTAAACTCG
TCAGTTTTTGACCTCATGACAAGGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGATCGGTGGAGGGAGCTTGTTGTTAAAAATGCTCAAATCATGGAATGGGAATTGGGGATTGACTTGGAGAGGAAAAGGGAAAGCGACC
ATCAGGGGTTTCACTATGTTATGGAACGAGAACGGTCTTGGAAAGGTTCATCAGAGGTTCATGAGGGGAATTGAAAGGGGATAGGAACATGAATTGAAAGGGAGGGAGATAAGAGCAGAGGTTCTCTTGACAGGGACAACAAAAGGGAAAGGGATGGTTCTTATTCATAATGTGAGGGACAGCTGGGGCTTGTCAGCCAT
AATAGAATTGCACTTGGCGAGCTTACCTTCAACTCCAAACTTAAACCACCAATTTGACAACATTGCTGGAGCAAATATTCATGCTACAAAGGACATTGTGGCGGCTGTTTGCAATCATGTTCTTAAGgtgctcagtatatggacaaaaaaatgggttttttgcaaaagttgctaatttctatgagttggaactgaatgta
gAAGGTTTAAATAATATGGAAGAATGTTTGGATGATGGCTCAGGGATTGAACATCCACAAGACTGCAATAAAAATTACTATCATAGAGGAGCTTGCTTCAAAATTCAGCTTTCCAAGAATTTTGATTATGAGACAAAGATTGAGTGAGACTGAGATTCAAGAGCTTAAATTTATAATATATGATCTAGAATACTCTATGG
GATGGGATGGAAGGTAATTTCAATTTCATCTCCTTTTATTTTTTGGACACCGGGGATGAAGAGGCAAGTATTTTAGAATTTGTTTGAGAACAACAAAAAATGAGTTAAAAAGCGTTCAAAGCAGGTTTGGGTTGGGCTTTTTTATTATTGTTATAATAACGATGATAATAATATTCGTATTTATATCATGTGACATGCAC
ATAGGAAGTAGAAAATAAGACGAGATGAGACAAGATGGTGAAGATGAAAAATATGTGGCACAAACCAACTTTGTGGAGTACCAACAACCTCAACTTCGACCTAAAGCTCAACATTGCACATGTAGGTGAGTACATTTTGTTGGGGTGCCTAGAGGAGAAAGAGAAAGGGTCGTGGGTACGGGGTGCGAGGAACACGAAAA
CATGATTTTTTCATTATTTTTATTTCTGACAATATTTTCTCTGTAGACTACAATAAAGAACACTATCATAGAGGTCACTTGAAAATTCAGCTTTCCAAGTATTTTGATTATGGGACAAAGATTGAGTGAGATTCAAG

Intron 2 GTAAGTATTA ... TCATGACAAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	41.59	40.4	22.5	34.5
A2	51.71	35.2	37.9	36.2
A3	59.4	27	42.8	35.6
A4	49.88	25.4	26.3	22.6
A5	54.65	26.9	38.4	25.9
A6	44.32	8.7	4	9.8
A7	55.54	24	23.7	35.6
A8	48.64	20	15.7	21.5
A9	38.86	19.3	15.6	8.7
A10	38.24	30.9	18.7	19.4

>TRINITY_DN123173_c0_g2_i2 from sample A1 / Example spliced isoform

TTGGCAAATAAAGAAAATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTATCTTAAACTCATTGGGTTTGAACTCCGTGACTTGCCGTTGGCAAATAAAGAAAATCTTATCAGACTGA
CTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACATGGAGGGAGCTTTCGGAGGGAGCTTGCTGTCAATAAGGCTCGAATGCTG
AATTGGGGACGAAGTGGAATGCTGAATTGGGGACGAAGTGGAGAGGGAAAGGGAAAGCAACCATCAGGGGGGAGTTTCACTATGTGATGGAACGAGAACGGTCTTTGGAGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTTA
GGCATTCAAGAAGGCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGAT

>TRINITY_DN123173_c0_g2_i8 from sample A1 / Example unspliced isoform:

TTGGCAAATAAAGAAAATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTATCTTAAACTCATTGGGTTTGAACTCCGTGACTTGCCGTTGGCAAATAAAGAAAATCTTATCAGACTGA
CTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACATGGAGGGAGCTTTCGGAGGGAGCTTGCTGTCAATAAGGCTCGAATGCTG
AATTGGGGACGAAGTGGAATGCTGAATTGGGGACGAAGTGGAGAGGGAAAGGGAAAGCAACCATCAGGGGGGAGTTTCACTATGTGATGGAACGAGAACGGTCTTTGGAGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTTA
GGCATTCAAGAAGGCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTgtaagtattaaacttgattttatagctcacgggcacctgaaagtattaaactcgattttggcatactggcaagtattaagggttctttattttgcatactggaagctttcttttctgacaaaaaaattaccct
aaactcgtcagtttttgacctcatgacaagGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGAT

Intron 3 GTAAGTATTA ... AACTCATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50.36	28.6	20.2	34.7
A2	62.46	22.7	36	36.3
A3	59.78	27.9	42	39.2
A4	54.16	23.8	24.8	28.2
A5	59.57	23.3	37.1	27.9
A6	49.02	6.5	4.1	7.8
A7	54.69	24.2	21.8	33.5
A8	56.05	14.8	15.2	20.2
A9	39.77	17.6	15.3	5.8
A10	42.47	27.5	17.5	17.8

>TRINITY_DN123173_c0_g2_i4 from sample A1 / Example spliced isoform

TTGGCAAATAAAGAAAATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTATCTTAAACTCATTGGGTTTGAACTCCGTGACTTGCCGTTGGCAAATAAAGAAAATCTTATCAGACTGA
CTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACATGGAGGGAGCTTTCGGAGGGAGCTTGCTGTCAATAAGGCTCGAATGCTG
AATTGGGGACGAAGTGGAATGCTGAATTGGGGACGAAGTGGAGAGGGAAAGGGAAAGCAACCATCAGGGGGGAGTTTCACTATGTGATGGAACGAGAACGGTCTTTGGAGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTTA
GGCATTCAAGAAGGCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTTTTTTGACCTCATGACAAGGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATC

>TRINITY_DN123173_c0_g2_i8 from sample A1 / Example unspliced isoform:

TTGGCAAATAAAGAAAATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTATCTTAAACTCATTGGGTTTGAACTCCGTGACTTGCCGTTGGCAAATAAAGAAAATCTTATCAGACTGA
CTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAACATGGAGGGAGCTTTCGGAGGGAGCTTGCTGTCAATAAGGCTCGAATGCTG
AATTGGGGACGAAGTGGAATGCTGAATTGGGGACGAAGTGGAGAGGGAAAGGGAAAGCAACCATCAGGGGGGAGTTTCACTATGTGATGGAACGAGAACGGTCTTTGGAGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTTA
GGCATTCAAGAAGGCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTgtaagtattaaacttgattttatagctcacgggcacctgaaagtattaaactcgattttggcatactggcaagtattaagggttctttattttgcatactggaagctttcttttctgacaaaaaaattaccct
aaactcgtcagTTTTTGACCTCATGACAAGGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGAT

Intron 4 GTAATTTCAA ... ATGCACATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	76.47	8	26	12
A2	65.52	10	19	18
A3	71.43	6	15	13
A4	100	0	12	14
A5	70.59	5	12	4
A6	44	14	11	2
A7	88.89	7	56	11
A8	81.43	13	57	7
A9	70	18	42	2
A10	94.74	2	36	1

>TRINITY_DN44169_c0_g1_i20 from sample A9 / Example spliced isoform

TAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTACCTTAAACTCACTGGGTTTCAACTCCGTGACTTGCTGTTGGCAAATAAAGAAAATCTTATCAGACTGACTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTAA
AATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAAATGGAGGGAGCTTTCTGTCAATAAGGCTCGAATGCTGAATTGGGGACAAAGTGGAGAGGGAAAGGGAAAGCAACCATCGGGGGTTTCACTATGTGATGGAACGAGAACGGTCTTTGG
AGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTGTAAGTATTAAACTGGATTTTATAGCTCACGGGCACCTGAAAGTATTAAACTCGATT
TTGGCATACTGGCAACTGCTAAGGGTTCTTTATTTTGCATACTGGAAGCTTTCTTTTCTGACAAAAAAATTACCCTAAACTCGTCAGTTTTTGACCTCATGACAAGGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGATCG
GTGGAGGGAGCTTGTTGTTAAAAATGCTCAAATCATGGAATGGGAATTGGGGATTGACTTGGAGAGGAAAAGGGAAAGCGACTATCAGGGGTTTCACTATGTTATGGAACGAGAACGGTCTTTGGAAAGGTTCATCAGAGGTTCATGAGGGGAATTGAAAGGGGATAGGAACATGAATTGAAAGGGAGGGAGATAAGAGC
AGAGGTTCTCTTGACAGGGACAACAAAAGGGAAAGGGATGATTCTATTCATAATGTGAGGGACAGCTGGGGCTTGTCAGCCATAATAGAATTGCATTTGGCGAGCTTACCTTCAACTCCAAACCTAAACCACTAATTTGACAACATTGCTGGAGCAAATATTCATGCCATTCTACAAAGGACATTGTGGCCGCTGTTTGC
AATCACGTTCTTAAGACTACAATAAAAATTACTATCATAGAGGAGCTTGCTTCAAAATTCAGCTTTCCAAGAATTTTGATTATGAGACAAAGATTGAGTGAGACTCAAGAGCTTAAATTTATAATATATGATCTAGAATACTCTATGGGATAGGATGGAAGGAAGTAGAAAATAAGACGAATGAGACAAGATGGTGAAGA
TGAAAAATATGTGGCACAAACCAACTTTGTGGAATACCAACAACTTCAACTTCAACCTAAAGCTCAACATTGAACATGTAGGTGAGTACATTTTGTTGGGGTGCCTAGAGGAGAAAGAGAAAGGGTCGTGGGTACGGGGTGCGAGGAACACGAAAACATGATTTTTTCATTATTTTTATTTCTGACAATAGTTTCTCTGT
AGACTACAATAAAGAACACTATCATAGAGGTCACTTGAAAATTCAGCTTTCCAAGCATTTTGATTATGTCAAAAATAAGGTGAGATGAGACAAGATGGAGAAGATGAAGAGTATGTGGCACAAA

>TRINITY_DN44169_c0_g1_i6 from sample A9 / Example unspliced isoform:

TAGAGTTTGGAAGGTTGAGTAACGAGAGGGAGGCTTTTTGTTATAGCAAGAAATTACCTTAAACTCACTGGGTTTCAACTCCGTGACTTGCTGTTGGCAAATAAAGAAAATCTTATCAGACTGACTACAGAGGGCTCGGTGAAATGACTTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGGCTCGGTGAAATGACTAA
AATCTTATTAGACTAGACTACAGAGGGCTCCGTGAAATGACCTAGGTCAGGGGAGCAGGAATAGAGTTTGGAAGGTTGAGTAAATGGAGGGAGCTTTCTGTCAATAAGGCTCGAATGCTGAATTGGGGACAAAGTGGAGAGGGAAAGGGAAAGCAACCATCGGGGGTTTCACTATGTGATGGAACGAGAACGGTCTTTGG
AGAGGTTCATTAAGAGGAATTCGCCTCTATTATTAACCAGATTACCGAGAGACATTCATTAAACGACCGAGACAGACTTGAGAGACTTGTCAGCTATTCAAGAAGAAGTCGTGCCAGAGAATTTCTGAGTCGGTTTCACAATTGTAAGTATTAAACTGGATTTTATAGCTCACGGGCACCTGAAAGTATTAAACTCGATT
TTGGCATACTGGCAACTGCTAAGGGTTCTTTATTTTGCATACTGGAAGCTTTCTTTTCTGACAAAAAAATTACCCTAAACTCGTCAGTTTTTGACCTCATGACAAGGCGATGGCAAATAAAGAAAATCCTATTGGACTGGACTGTAGAGGGATCATGAAATAAGGGGAGTAGGAATAGAGTCTGGAAGGTCGAGTGATCG
GTGGAGGGAGCTTGTTGTTAAAAATGCTCAAATCATGGAATGGGAATTGGGGATTGACTTGGAGAGGAAAAGGGAAAGCGACTATCAGGGGTTTCACTATGTTATGGAACGAGAACGGTCTTTGGAAAGGTTCATCAGAGGTTCATGAGGGGAATTGAAAGGGGATAGGAACATGAATTGAAAGGGAGGGAGATAAGAGC
AGAGGTTCTCTTGACAGGGACAACAAAAGGGAAAGGGATGATTCTATTCATAATGTGAGGGACAGCTGGGGCTTGTCAGCCATAATAGAATTGCATTTGGCGAGCTTACCTTCAACTCCAAACCTAAACCACTAATTTGACAACATTGCTGGAGCAAATATTCATGCCATTCTACAAAGGACATTGTGGCCGCTGTTTGC
AATCACGTTCTTAAGACTACAATAAAAATTACTATCATAGAGGAGCTTGCTTCAAAATTCAGCTTTCCAAGAATTTTGATTATGAGACAAAGATTGAGTGAGACTCAAGAGCTTAAATTTATAATATATGATCTAGAATACTCTATGGGATAGGATGGAAGgtaatttcaatttcatctccttttattttttggacaccg
gggatgaagaggcaagtattttagaatttgtttgagaacaacaaaaaatgagttaaaaagcgttcaaagcagggttgggttgggcttttttattattgttataataacgatgataataatattcgtatttatatcatgtgacatgcacatagGAAGTAGAAAATAAGACGAGATGAGACAAGATGGTGAAGATGA