sp|O82265|SCC3_ARATH ----> Sister-chromatid cohesion protein 3
Intron 1 GTAATTTTGT ... TTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.32 | 149 | 42 | 34 |
| A2 | 18.81 | 164 | 41 | 35 |
| A3 | 21.89 | 132 | 40 | 34 |
| A4 | 17.29 | 122 | 35 | 16 |
| A5 | 22.22 | 56 | 19 | 13 |
| A6 | 22.11 | 37 | 11 | 10 |
| A7 | 16.99 | 127 | 24 | 28 |
| A8 | 18.42 | 62 | 17 | 11 |
| A9 | 18.52 | 99 | 25 | 20 |
| A10 | 21.88 | 100 | 23 | 33 |
>TRINITY_DN119714_c1_g2_i8 from sample A2 / Example spliced isoformGTCACACCCGGGCCTTAATGTTTGTTGTTAAAGTCCGTCGCAGCGCAGTGTAGAACAATCTGACGTGGCACACTGACACGTTATAATTCCGGGCTCAAGACATCGTCCCACACCTGGGCTTTAATTTTTGTTGTAAAAGCCGTTTTGGTTCCCTCCATTTTACAAGGCAGTGGCCAAACTTGGATTAAGCAAAGCTCTGT
AGAAAGCAGACACACGGCGTCAATTGACACAATTCCGAGAGCCGTAGATGTTATCGGTTTATCTTAAATATTTTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAACCTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAG
CCATGGAAGGTGCTCGTGTGCTTCGGCAAAAACGTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAAACTGAGTCTGGGCTTGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAG
GAGTCTAGAAATCCTAATGTCGAGGCTACAGTTGGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTATTAAGTATCATGGAAAGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTAC
CTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAATTTTAAAGATAACCTTCTTGTTTTTTTGG
ACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCTTGGTGGACAGCGTGAGACTACACAACGT
CAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTGCTTGTATCAGAGCTATTGGTTCATGGAT
TCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGAATGCTGCTGTCCGGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTG
ATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCACTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATG
GAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGTGATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGT
TCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCAAAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAG
TGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTG
AAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGAT
CCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATAT
GTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGAT
GTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGATGACAAT
CTTTAGTTGTCTCTCCAACTAAATGGCTTTACCAATGGTGCAAAGCTTATGATTTCGTAGAAGACTCCAGAAATACAC
>TRINITY_DN119714_c1_g2_i10 from sample A2 / Example unspliced isoform:CTAGATTCTAAGTAAATATTGTTTCCTTGTTTACGCAAACTATAAATTCTATTTTTTTTTGTTTTATATTATTTTCACTGAATGATTGTAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAGTGG
AAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTGAAG
GAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGgtaattttgttcattgtttttacagatatgttatattcaatggcgtgttgaaacttgatacatccagtatctgatgaattttttttcagGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAG
TTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGCCTACTGATACAAGTGTCCTTGTAGACAAGAAATGGAAAGATCAGTTTGGATTGCGTGCTATTATTATATTTATTAAACACTAACTTACACAGTGGAAGTAGTTGTTTACAGGTGA
TCCG
Intron 2 GTAATGTGCT ... GACCATCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.91 | 159 | 78 | 12 |
| A2 | 26.46 | 139 | 50 | 11 |
| A3 | 27.84 | 127 | 49 | 4 |
| A4 | 21.37 | 103 | 28 | 21 |
| A5 | 19.05 | 51 | 12 | 1 |
| A6 | 22.22 | 56 | 16 | 0 |
| A7 | 28.41 | 126 | 50 | 2 |
| A8 | 28.08 | 105 | 41 | 7 |
| A9 | 24.67 | 113 | 37 | 4 |
| A10 | 25.19 | 98 | 33 | 1 |
>TRINITY_DN103256_c3_g2_i3 from sample A4 / Example spliced isoformTCAGCAATTTGGATGATGAGGTGCCTACTGATACAAGTGTCCTTGTAGACAAGAAATGGAAAGATCAGTTTGGATTGCGTGCTATTATTATATTTATTAAACACTAACTTACACAGTGGAAGTAGTTGTTTACAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGG
CGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGC
TACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTT
GGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGACCACAAGCAAGTCTTT
TTTCCAATGCAAGGAGCTTGCAAGTCGGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGCACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGTCTGATGTACAAGAAA
TAATTAGGGATGTTCAGAAAAAAGTGGATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGCCCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAACATCAAGGGAAAGAAA
CTTTTTGAAGGACATGACACAACAGATGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACTAGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCCAAAAAATTCTGGCAA
GTCTGTACAAGAAACAAGAATTATCTCTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGATAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCATCATCAGCTGACCCTA
GCAAAGCAACTGAGGAATACTCAGCAGCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAAGACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTTTTTGTTCCAAAGATA
TTGTTCGTAAGAAGACTGCATTGACAATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGCTGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTACTGCTGATGCTAATTT
CAATTTGAGCAGCATATTTTTTGCTTATTTCCAACACCCTGGGGTAGCCTTAAATTCGGCAGTCAATGAGATCTCTTTGACTACTTTCTGAAACCATCTCATATATTCCATGTGCTGTTGTAGATTGACAGAGTGGGTGACAACCTTAAAATCTCTTTCCTAACTTTTTATGCCTCTTGTTATTTTTTGGCACTTTAGTT
TTCATCTATTATCT
>TRINITY_DN103256_c3_g2_i5 from sample A4 / Example unspliced isoform:GAGGACTGCAAGTCAGGAAAAAATATGTTGAATGCTTCAGTCGATCCATTACCTTGCAAATGGGAAGCTGAACTTCTATCAGGCTGAAAAAAAAATCAGATAGTAAGATCCTGTGCTTCAGCTTATAAAAGAAGCATTTTTCAGATATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGAAATAACATTCTGCGCTA
CAGAAATCCAGGTAGACTTGCAAGATTTTTCCCAGAATAAGTTGAAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATG
CTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAG
CTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAGTATGTTGAAATCTCAAACATATTATAATTGCAATTGTTCAATATTTGTTCATGAACTGTAATTTTATTTCAAATGCATTTGTACAATTTGTAAATTTGTTTCTGGCTATTGAATAATTTGTTTCAGATATGTACTATATTATCCGATGTATGGAGTTTG
TTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGgtaatgtgcttttggaggactgactaaatttccattttaccacatagattcttgttatgtttttaccatatgagactgtaaagaaata
atggtatttgtgaccatccagATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGTAAACACTGAAACCTACTAAATTCTTTCACTCTTTCCTGTTGCGTAAGGATCTGAAATAAGTAGCAGG
GGGGAAGTCACAAGTGCTTGCATTATACAGATACTTTCTACATTGAGTAAAAACTATCTTCTGCAATTTTTTACTCTTTTTATTTCCATTTCAAGCATGCTATTTTGTAAAACTTGAAATCAAGTACAAAGAAAATGTTCATGTGTCTTTTCTTGCATTTGAAAGGGATGGAAGTCATTCTAAACATGATCGGTTGTTTC
TTCTTTTTCATTCTTCACTCCCCCTTCCATCCTTCCTGGTTGAACTATTATCTACAGATTCTACACAAAGGGAAAATGCAACATTGCAATCAATTTCTATTGCCGTAAGGTATAACTGAATCGGCAATTACCCGTGATGACAGATGTATCTGCCACTTGCAAATCTTTTAAAACTTTTGCTTCATGCACCTCTTCTGCTC
TTCACGAGTCATGACTACATATATTCATTTAACATTTTATTTGTTTCATGCTATCCTTATCTTTAAGTATTAGCAACAATTTGCTTAGGTTTTTCCGTGAATGGGAAATTATGCTTGATGACAGATATATCTGCCACTTGCAAAACTTTTGGAACTTTTGCTTTATGCATCTCTTCTGCTCTTCTTGACTACATTATATT
CATTTTACTTGTTTCATGGTATCCCTATCTTCAAGAATTGGC
Intron 3 GTATGTTGAA ... TTTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.74 | 171 | 47 | 48 |
| A2 | 21.05 | 135 | 31 | 41 |
| A3 | 20 | 118 | 21 | 38 |
| A4 | 24.7 | 125 | 54 | 28 |
| A5 | 25 | 57 | 16 | 22 |
| A6 | 20.9 | 70 | 18 | 19 |
| A7 | 20.99 | 143 | 31 | 45 |
| A8 | 18.48 | 86 | 14 | 25 |
| A9 | 18.15 | 106 | 23 | 24 |
| A10 | 16.42 | 84 | 15 | 18 |
>TRINITY_DN119714_c1_g2_i8 from sample A2 / Example spliced isoformGTCACACCCGGGCCTTAATGTTTGTTGTTAAAGTCCGTCGCAGCGCAGTGTAGAACAATCTGACGTGGCACACTGACACGTTATAATTCCGGGCTCAAGACATCGTCCCACACCTGGGCTTTAATTTTTGTTGTAAAAGCCGTTTTGGTTCCCTCCATTTTACAAGGCAGTGGCCAAACTTGGATTAAGCAAAGCTCTGT
AGAAAGCAGACACACGGCGTCAATTGACACAATTCCGAGAGCCGTAGATGTTATCGGTTTATCTTAAATATTTTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAACCTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAG
CCATGGAAGGTGCTCGTGTGCTTCGGCAAAAACGTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAAACTGAGTCTGGGCTTGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAG
GAGTCTAGAAATCCTAATGTCGAGGCTACAGTTGGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTATTAAGTATCATGGAAAGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTAC
CTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAATTTTAAAGATAACCTTCTTGTTTTTTTGG
ACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCTTGGTGGACAGCGTGAGACTACACAACGT
CAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTGCTTGTATCAGAGCTATTGGTTCATGGAT
TCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGAATGCTGCTGTCCGGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTG
ATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCACTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATG
GAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGTGATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGT
TCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCAAAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAG
TGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTG
AAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGAT
CCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATAT
GTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGAT
GTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGATGACAAT
CTTTAGTTGTCTCTCCAACTAAATGGCTTTACCAATGGTGCAAAGCTTATGATTTCGTAGAAGACTCCAGAAATACAC
>TRINITY_DN119714_c1_g2_i4 from sample A2 / Example unspliced isoform:ATTTTTTTGTTGTAAAAGTCCTTTTGGTGTGGTGGCCAAATGTGGACTAAGAAAAGATCTGTAGAAAGCAGACATGGTGTCAACTGACACATTATTCAGAGAGTCGTAGATGTTATCTATTCACCTTTAATATCTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAAC
CTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAGCCATGGAAGGTGCTCGTGTGCTTCGGCAAAAACGTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAAACTGAGTCTGGGCT
TGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAGGAGTCTAGAAATCCTAATGTCGAGGCTACAGTTGGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTATTAAGTATCATGGAA
AGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTACCTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATGTATCCTTAAAAAAT
CATTGAGTCTTTTGCTTGTCCAATTAAAGTAGTTGAGGTCAATCTAAGAATTCTATGTTATATCTCCTTGTGCAAATATTGTTTTACAAGGAATGAATCTTCTTATGTTTTTGGGTACGATTTCAATAAAAATCTTCTTAACTAAACACCAGGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAAT
TTTAAAGATAACCTTCTTGTTTTTTTGGACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCT
TGGTGGACAGCGTGAGACTACACAACGTCAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTG
CTTGTATCAGAGCTATTGGTTCATGGATTCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGAATGCTGCTGTCCGGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAAC
CGTATGATTGAGCTAGCAGATGATATTGATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCACTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAG
CAGCTCACAGCCTATCCCCAAAGGAATGGAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGTGATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAAC
TTACAGAGAAAGATGCTACAAATCTTGTTCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCAAAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTA
GCAGACAAGGTGAAGATATCATCAATAGTGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGA
CTTGCAAGATTCCGCTCAGAATAAATTGAAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAG
ATTTCAGCAATTTGGATGATGAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACT
GCAAGAATTATGCTCTGCTGTACAgtatgttgaaatctcaaacatattataattgcaattgttcaatatttgttcatgaactgtaattttatttcaaatgcatttgtacaatttgtaaatttgtttctggctattgaataatttgtttcagATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGT
TGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTT
CCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGAC
CACAAGCAAGTCTTTTTTCCAATGCAAGGAGCTTGCAAGTCGGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGCACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGT
CTGATGTACAAGAAATAATTAGGGATGTTCAGAAAAAAGTGGATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGCCCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAAC
ATCAAGGGAAAGAAACTTTTTGAAGGACATGACACAACAGATGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACTAGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCC
AAAAAATTCTGGCAAGTCTGTACAAGAAACAAGAATTATCTCTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGATAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCAT
CATCAGCTGACCCTAGCAAAGCAACTGAGGAATACTCAGCAGCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAAGACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTT
TTTGTTCCAAAGATATTGTTCGTAAGAAGACTGCATTGACAATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGCTGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTAC
TGCTGATGCTAATTTCAATTTGAGCAGCATATTTTTTGCAAGGACAGCCTAC
Intron 4 GTGAATTCAT ... GGGAATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.93 | 188 | 29 | 37 |
| A2 | 21.17 | 175 | 45 | 49 |
| A3 | 15.87 | 159 | 21 | 39 |
| A4 | 17.14 | 203 | 39 | 45 |
| A5 | 20.19 | 83 | 19 | 23 |
| A6 | 15.38 | 11 | 0 | 4 |
| A7 | 18.52 | 66 | 20 | 10 |
| A8 | 18.52 | 22 | 4 | 6 |
| A9 | 18 | 41 | 12 | 6 |
| A10 | 14.93 | 57 | 11 | 9 |
>TRINITY_DN119714_c1_g2_i8 from sample A2 / Example spliced isoformGTCACACCCGGGCCTTAATGTTTGTTGTTAAAGTCCGTCGCAGCGCAGTGTAGAACAATCTGACGTGGCACACTGACACGTTATAATTCCGGGCTCAAGACATCGTCCCACACCTGGGCTTTAATTTTTGTTGTAAAAGCCGTTTTGGTTCCCTCCATTTTACAAGGCAGTGGCCAAACTTGGATTAAGCAAAGCTCTGT
AGAAAGCAGACACACGGCGTCAATTGACACAATTCCGAGAGCCGTAGATGTTATCGGTTTATCTTAAATATTTTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAACCTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAG
CCATGGAAGGTGCTCGTGTGCTTCGGCAAAAACGTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAAACTGAGTCTGGGCTTGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAG
GAGTCTAGAAATCCTAATGTCGAGGCTACAGTTGGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTATTAAGTATCATGGAAAGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTAC
CTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAATTTTAAAGATAACCTTCTTGTTTTTTTGG
ACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCTTGGTGGACAGCGTGAGACTACACAACGT
CAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTGCTTGTATCAGAGCTATTGGTTCATGGAT
TCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGAATGCTGCTGTCCGGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTG
ATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCACTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATG
GAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGTGATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGT
TCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCAAAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAG
TGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTG
AAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGAT
CCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATAT
GTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGAT
GTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGATGACAAT
CTTTAGTTGTCTCTCCAACTAAATGGCTTTACCAATGGTGCAAAGCTTATGATTTCGTAGAAGACTCCAGAAATACAC
>TRINITY_DN119714_c1_g2_i6 from sample A2 / Example unspliced isoform:ATTTTTTTGTTGTAAAAGTCCTTTTGGTGTGGTGGCCAAATGTGGACTAAGAAAAGATCTGTAGAAAGCAGACATGGTGTCAACTGACACATTATTCAGAGAGTCGTAGATGTTATCTATTCACCTTTAATATCTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAAC
CTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAGCCATGGAAGGTGCTCGTGTGCTTCGGCAAAAACGTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAAACTGAGTCTGGGCT
TGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAGGAGTCTAGAAATCCTAATGTCGAGGCTACAGTTGGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTATTAAGTATCATGGAA
AGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTACCTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATGTATCCTTAAAAAAT
CATTGAGTCTTTTGCTTGTCCAATTAAAGTAGTTGAGGTCAATCTAAGAATTCTATGTTATATCTCCTTGTGCAAATATTGTTTTACAAGGAATGAATCTTCTTATGTTTTTGGGTACGATTTCAATAAAAATCTTCTTAACTAAACACCAGGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAAT
TTTAAAGATAACCTTCTTGTTTTTTTGGACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCT
TGGTGGACAGCGTGAGACTACACAACGTCAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTG
CTTGTATCAGAGCTATTGGTTCATGGATTCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGgtgaattcatgaaggtttattgcttgtggtaccctcttatctttaatatgagctaactgcctgtctttattcttctcttgggaatgaagAATGCTGCTGTCC
GGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTGATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCA
CTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATGGAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGT
GATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGTTCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCA
AAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAGTGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATA
AAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTGAAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGAC
AGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTA
CAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCA
AGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTT
TATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGACCACAAGCAAGTCTTTTTTCCAATGCAAGGAGCTTGCAA
GTCGGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGCACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGTCTGATGTACAAGAAATAATTAGGGATGTTCAGAAAAAA
GTGGATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGCCCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAACATCAAGGGAAAGAAACTTTTTGAAGGACATGACACAAC
AGATGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACTAGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCCAAAAAATTCTGGCAAGTCTGTACAAGAAACAAGAATTA
TCTCTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGATAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCATCATCAGCTGACCCTAGCAAAGCAACTGAGGAATACTCA
GCAGCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAAGACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTTTTTGTTCCAAAGATATTGTTCGTAAGAAGACTGCATTG
ACAATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGCTGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTACTGCTGATGCTAATTTCAATTTGAGCAGCATATTTTTTG
CAAGGACAGCCTAC
Intron 5 GTATCCTTAA ... TAAACACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.07 | 164 | 68 | 36 |
| A2 | 23.64 | 126 | 46 | 32 |
| A3 | 21.41 | 200 | 75 | 34 |
| A4 | 20 | 132 | 46 | 20 |
| A5 | 23.61 | 110 | 31 | 37 |
| A6 | 26.32 | 7 | 4 | 1 |
| A7 | 22.47 | 69 | 22 | 18 |
| A8 | 24.14 | 11 | 6 | 1 |
| A9 | 22.52 | 43 | 17 | 8 |
| A10 | 17.24 | 72 | 20 | 10 |
>TRINITY_DN133078_c1_g4_i9 from sample A1 / Example spliced isoformTCCGTCGCAGCGCAGTGTAGAACAATCTGACGTGGCACACTGACACGTTATAATTCCGGGCTCAAGACATCGTCCCACACCTGGGCTTTAATTTTTGTTGTAAAAGCCGTTTTGGTTCCCTCCATTTTACAAGGCAGTGGCCAAACTTGGATTAAGCAAAGCTCTGTAGAAAGCAGACACACGGCGTCAATTGACACAAT
TCCGAGAGCCGTAGATGTTATCGGTTTATCTTAAATATTTTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAACCTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAGCCATGGAAGGTGCTCGTGTGCTTCGGCAAAAAC
GTGCCGCTGCTGAAAAGTCTACACAACCCCAGATGTTATTAAGTATCATGGAAAGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTACCTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGG
ATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAATTTTAAAGATAACCTTCTTGTTTTTTTGGACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCA
TGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCTTGGTGGACAGCGTGAGACTACACAACGTCAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGAT
AACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTGCTTGTATCAGAGCTATTGGTTCATGGATTCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGAATGCTGCTGTCCGGA
AAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTGATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCACTG
TATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATGGAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGTGAT
TGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGTTCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCAAAG
CTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAGTGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAA
GAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTGAAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGT
GAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAG
TATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGT
GAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTTTAT
TCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGACCACAAGCAAGTCTTTTTTCCAATGCAAGGAGCTTGCAAGTC
GGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGCACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGTCTGATGTACAAGAAATAATTAGGGATGTTCAGAAAAAAGTG
GATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGCCCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAACATCAAGGGAAAGAAACTTTTTGAAGGACATGACACAACAGA
TGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACTAGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCCAAAAAATTCTGGCAAGTCTGTACAAGAAACAAGAATTATCT
CTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGATAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCATCATCAGCTGACCCTAGCAAAGCAACTGAGGAATACTCAGCA
GCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAAGACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTTTTTGTTCCAAAGATATTGTTCGTAAGAAGACTGCATTGACA
ATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGCTGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTACTGCTGATGCTAATTTCAATTTGAGCAGCATATTTTTTGCTT
ATTTCCAACACCCTGGGGTAGCCTTAAATTCGGCAGTCAATGAGATCTCTTTGACTACTTTCTGAAAAAA
>TRINITY_DN133078_c1_g4_i5 from sample A1 / Example unspliced isoform:TCCGTCGCAGCGCAGTGTAGAACAATCTGACGTGGCACACTGACACGTTATAATTCCGGGCTCAAGACATCGTCCCACACCTGGGCTTTAATTTTTGTTGTAAAAGCCGTTTTGGTTCCCTCCATTTTACAAGGCAGTGGCCAAACTTGGATTAAGCAAAGCTCTGTAGAAAGCAGACACACGGCGTCAATTGACACAAT
TCCGAGAGCCGTAGATGTTATCGGTTTATCTTAAATATTTTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAGATTAACAGCAAAACCTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAGCCATGGAAGGTGCTCGTGTGCTTCGGCAAAAAC
GTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAAACTGAGTCTGGGCTTGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAGGAGTCTAGAAATCCTAATGTCGAGGCTACAGTT
GGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTATTAAGTATCATGGAAAGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTACCTTGACAGAGTTATTAACAGTGCTATTTGAGGC
ATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATgtatccttaaaaaatcattgagtcttttgcttgtccaattaaagtagttgaggtcaatctaagaattctatgttatatctccttgtgcaaatattgttttacaaggaat
gaatcttcttatgtttttgggtacgatttcaataaaaatcttcttaactaaacaccagGGCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAATTTTAAAGATAACCTTCTTGTTTTTTTGGACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAG
ATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTGGTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCTTGGTGGACAGCGTGAGACTACACAACGTCAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTG
TCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGGGCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTGCTTGTATCAGAGCTATTGGTTCATGGATTCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGA
TAAGAATGCTGCTGTCCGGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGGATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTGATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAG
ATGATGAGCTTGGTCCACTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGTGCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATGGAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCA
ATTCTCAGTGACTATGTGATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTGGAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGTTCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCG
TAAGCCTTCACTCAGCAAAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGACAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAGTGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGA
CCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAGTCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTGAAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGAT
GATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTTTGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAA
TCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAA
ATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCT
GTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGACCACAAGCAAGTCTTTTTTCCA
ATGCAAGGAGCTTGCAAGTCGGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGCACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGTCTGATGTACAAGAAATAATTA
GGGATGTTCAGAAAAAAGTGGATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGCCCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAACATCAAGGGAAAGAAACTTTTT
GAAGGACATGACACAACAGATGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACTAGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCCAAAAAATTCTGGCAAGTCTGT
ACAAGAAACAAGAATTATCTCTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGATAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCATCATCAGCTGACCCTAGCAAAG
CAACTGAGGAATACTCAGCAGCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAAGACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTTTTTGTTCCAAAGATATTGTTC
GTAAGAAGACTGCATTGACAATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGCTGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTACTGCTGATGCTAATTTCAATTT
GAGCAGCATATTTTTTGCTTATTTCCAACACCCTGGGGTAGCCTTAAATTCGGCAGTCAATGAGATCTCTTTGACTACTTTCTGAAAAAA
Intron 6 GTGCCTACTG ... TTGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.84 | 186 | 3 | 35 |
| A2 | 19.35 | 125 | 1 | 30 |
| A3 | 15.86 | 122 | 0 | 23 |
| A4 | 15.56 | 114 | 0 | 21 |
| A5 | 15.69 | 43 | 0 | 8 |
| A6 | 13.33 | 39 | 0 | 6 |
| A7 | 11.73 | 143 | 0 | 19 |
| A8 | 12.12 | 87 | 0 | 12 |
| A9 | 15.38 | 66 | 0 | 12 |
| A10 | 14.93 | 114 | 1 | 20 |
>TRINITY_DN103256_c3_g2_i1 from sample A4 / Example spliced isoformTTTTGTTGTAAAAGCCGTTTTGGTTCCCTCCATTTTACAAGGCAGTGGCCAAACTTGGATTAAGCAAAGCTCTGTAGAAAGCAGACACACGGCGTCAATTGACACAATTCCGAGAGCCGTAGATGTTATCGGTTTATCTTAAATATTTTTTGATATATTTTCCTTGGGTTCCATTCCAAACTTCAAGCATTTTCGCGCAG
ATTAACAGCAAAACCTGCTGATCTGAAGATAACACGGCAAGGCTCTTCAAAGCACCTGGGGACACCATCATTCAGCCATGGAAGGTGCTCGTGTGCTTCGGCAAAAACGTGCCGCTGCTGAAAAGTCTACACAACCCCAGAAAAGGTCCAAACTTGTTTCTTCAGACATGGAAGAAGGCACTATAGGAGGTCAGGTTCAA
ACTGAGTCTGGGCTTGAAGGTGGGAGGGATGTTTCTTTCAAACAACCACACCCTCCTAGCATTGATAAGGGGAAGGAGTCTAGAAATCCTAATGTCGAGGCTACAGTTGGAAAGGTCAAAGAGACTGGAGTTAAAAGGAAGGCCCAGGTCTTCTCAGGAGGACATGATACTGACAGCAATCCTAGTTTAATTGATGTTAT
TAAGTATCATGGAAAGCTTGTCCCACAGTCTGCAAAAAATTGGGTAGAGAGATATGAATCGGATACAAAAGCTACCTTGACAGAGTTATTAACAGTGCTATTTGAGGCATGTGGAGTCAAATACCAAGCAGATGAAGGTCCTTTGGACGAAATTGATGTGGATGATGTGGTGGTCTCCTTAGTAAACCAGGCCAAGGATG
GCAATATAGAAGACTACCTTGGATCCAAGCAAAAGGAATTGAAGAATTTTAAAGATAACCTTCTTGTTTTTTTGGACAGTCTTGTCCTTGAGTGCCAGGATGGACCTTTGTTTGACCAAGTATTCATGGAAAAATGCATAGATTATGTCATTGCTCTTTCATGTACCCCTCCAAGAGTTTTTCGACAGGTTACAACATTG
GTTGGACTCCAGCTTGTGACATCACTTGTTACTGTTGCAAAAACTCTTGGTGGACAGCGTGAGACTACACAACGTCAATTGAATGCTGAGAAAAAGAAAAGGAAAGATGGCCCTCGTTTAGAGTCATTGAATAAGACGTTGTCTGTGACGCATGAAAAGATAACTATGGCAGAGGAAATGATGCGTAAAATATTTACAGG
GCTTTTTATGCATCGTTACCGAGACGTAGATCCAGATATTCGGATTGCTTGTATCAGAGCTATTGGTTCATGGATTCTGTCTTATCCATCCCTATTCTTACAAGATCTATACTTGAAATACCTTGGATGGACTTTGAATGATAAGAATGCTGCTGTCCGGAAAATTTCCATATTGGCACTGCAAAATCTGTATGAGGTGG
ATGATAATGTGCCATCACTTAGCCTCTTCACAGAACGATTTTGCAACCGTATGATTGAGCTAGCAGATGATATTGATATATCTGTGGCTGTTAGTGCCATTGGACTCTTGAAACAATTATTAAGGCATCAGCTTCTCGCAGATGATGAGCTTGGTCCACTGTATGACCTATTGATTGATGAATCACCACTCATTCGCCGT
GCTGTTGGAGAATTAGTATATGATCACTTAATAGCTCAGAAATTTAGCAGCTCACAGCCTATCCCCAAAGGAATGGAAAATGAGTCTGAAGTTCCTATAGGTAGGTTGCTGCAAATATTGAAGGAATTTTCCACAGATCCAATTCTCAGTGACTATGTGATTGATGCTGTCTGGGAAGATATGAAGGCAATTAAAGATTG
GAAATGTATCATTTCTATGCTTTTAGATGATAATCCAAGGATTGAACTTACAGAGAAAGATGCTACAAATCTTGTTCGTGTTTTATGTGCCTCTATGAAGAAGGCAGTAGGAGAGAAGATTGTTCCTACTGCTGATAACCGTAAGCCTTCACTCAGCAAAGCTCAGAAGGAGGTACTAGACAATAATAAACGAGAAGTGA
CAGCGAGTATGATGAAGCATTATCCACTGATGTTGAGGAAATATTTAGCAGACAAGGTGAAGATATCATCAATAGTGGAAATTATCATGCATATGAAGCTTGAGCTTTATTCACTCAAACGTCAAGAACAGAATTTCATGACCGTGCTTCAGCTTATAAAAGAAGCATTTTTCAAACATGGGGAAGCAAACACTTTAAAG
TCATGTGTGAAGGCAATCACATTCTGCGCTACTGAAAGCCAGGCAGACTTGCAAGATTCCGCTCAGAATAAATTGAAGGAATTGGAAGATGAGCTTGTTCTCAAGCTCAGATCTGCCATAAAACAAGCAGGGGTATCTGATGATGAGTACTCACTGACAGTGAATCTTAGAAGGCTTTACCAACTGCAGTTATCGAAGTT
TGTGTCAAGTGAAACTCTGTTCTCAGACATGCTTGGTCTTATAAAAGATTTCAGCAATTTGGATGATGAGGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGGCGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGC
TAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGCTACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTAC
CGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTTGGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCT
CATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGACCACAAGCAAGTCTTTTTTCCAATGCAAGGAGCTTGCAAGTCGGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGC
ACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGTCTGATGTACAAGAAATAATTAGGGATGTTCAGAAAAAAGTGGATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGC
CCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAACATCAAGGGAAAGAAACTTTTTGAAGGACATGACACAACAGATGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACT
AGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCCAAAAAATTCTGGCAAGTCTGTACAAGAAACAAGAATTATCTCTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGA
TAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCATCATCAGCTGACCCTAGCAAAGCAACTGAGGAATACTCAGCAGCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAA
GACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTTTTTGTTCCAAAGATATTGTTCGTAAGAAGACTGCATTGACAATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGC
TGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTACTGCTGATGCTAATTTCAATTTGAGCAGCATATTTTTTGCTTATTTCCAACACCCTGGGGTAGCCTTAAATTCGGCAGTCA
ATGAGATCTCTTTGACTACTTTCTGAAACCATCTCATATATTCCATGTGCTGTTGTAGATTGACAGAGTGGGTGACAACCTTAAAATCTCTTTCCTAACTTTTTATGCCTCTTGTTATTTTTTGGCACTTTAGTTTTCATCTATTATCT
>TRINITY_DN103256_c3_g2_i3 from sample A4 / Example unspliced isoform:TCAGCAATTTGGATGATGAGgtgcctactgatacaagtgtccttgtagacaagaaatggaaagatcagtttggattgcgtgctattattatatttattaaacactaacttacacagtggaagtagttgtttacagGTGATCCGTCTTGTTCTTTTGAACATGTTTCTGCACATTGCTTGGAGTTTAAGATCAATCGATGG
CGAAAATCCTTCTGAAGTAGCTACAGTATCATTGTTATCAAAACGTGATAATCTAATGAATCAGCTAGAATATTTTGCAGATAGTGTTCTTGAAAGCTGGGAAAAAGGAACTGCAAGAATTATGCTCTGCTGTACAATATGTACTATATTATCCGATGTATGGAGTTTGTTTAGTGAAGCCAAGTTGCGCTCAACCAAGC
TACAAAATCTAGGGTTCTTTCCAAGTGAGAACATGTTGAAAAAATTCTGGAAAGTTTGTGATTACCGCCTTAATGCTGCTGATGATGAGGAGGAGGAAGAGGATATGAATGAGGAAGTTGATGAGACAACTCAGAAGGATGTTGTGATATGTGCTGCTGCAAAATTGGTTGCACATGACATGGTTCCTAGTGAATTTCTT
GGTCCTGTGATTATTTCAAATTTTATTCTTCATGGAAGAAGTGTTGCTGAGACAGTAAAGTATCTCATTGCCATTTTGAAGAAAAGTTCGAAAGGGGATGATCTTCCCCTGATGTATTTGGAAGCTATTAAGACGGCATATAAACGGCATATGAAAGAGGCTTCAAAAAATGATGAAGATTGGACCACAAGCAAGTCTTT
TTTCCAATGCAAGGAGCTTGCAAGTCGGCTATCTGCAACATTTTTGGGTTCTGCTCGTAACAAGCACAGGCTAAATATTTTAAAGATTGTGAAGGAAGGAATTGCATATGCATTTGAGGATGCTCCAAAGCAGTTACCATTCTTGGAGGGAGGCGTGCTGCAATTTGCACTCAAATTGCCTTTGTCTGATGTACAAGAAA
TAATTAGGGATGTTCAGAAAAAAGTGGATGGTATCAACACAGATGAAGATCCTAGCAGCTGGCGCCCATATTTTACATTTGTGGACTATTTGCAAGAAAAGTATACAAGGAATGAAGGTGCTTATGGAGAAAAAGAAACAGCTGCAGTAAAGCATCATATCCCTCGTCCAAGAAAGGCAAAAAACATCAAGGGAAAGAAA
CTTTTTGAAGGACATGACACAACAGATGACGAAGATTTACAAAGTGAATCTGATTGTGATGAACTAGATGAAGAGGAAGATGATGACACTCCCTTGTCTCATGTAAAGCAAACATTGAACTCTGTGCGGTTAAGACAGAATTTGCCAAAGAATCAATCTGCTGACATATTAAGGCAGAATCTGCCAAAAAATTCTGGCAA
GTCTGTACAAGAAACAAGAATTATCTCTCCAAAATCACTACAACCTGAATCAGGATCGGCAGGGATAGATTCCAATGTTGCCCATGATCTGCTTGCTTCAGCTACGGAGGAACAATTGCCCACTGGCTTGGCTCAAGAAATACGATCAACACGTTCTGGTTTACGATTTGGTAAACTGCCATCATCATCAGCTGACCCTA
GCAAAGCAACTGAGGAATACTCAGCAGCCCAATATGTAGGCAAAACAATTTTTTCTTCAGGTGAAGACATGGATGATGAATTTGTTGGTCCAAAGAGATATCATTTGTAAGAAGATTGTATTAGATGATGAAATTGTTGGTCAGAAGAGATGGCTGTAACAAGATGTTTTTTGGATAATGAACTTTTTGTTCCAAAGATA
TTGTTCGTAAGAAGACTGCATTGACAATTAGTTGTTAACCTGTAAGTCTCTGGACTGACTGGAGCTGTGAGATAACATCCCATAAGTAAGATGCAAACTCGTGTATAAATTTCATCTGGGTCAATGCTTATGTCTCTATTTGGTATCCATTAATCTTTGTAGCGGGCATTGCAAGGACAGCCTACTGCTGATGCTAATTT
CAATTTGAGCAGCATATTTTTTGCTTATTTCCAACACCCTGGGGTAGCCTTAAATTCGGCAGTCAATGAGATCTCTTTGACTACTTTCTGAAACCATCTCATATATTCCATGTGCTGTTGTAGATTGACAGAGTGGGTGACAACCTTAAAATCTCTTTCCTAACTTTTTATGCCTCTTGTTATTTTTTGGCACTTTAGTT
TTCATCTATTATCT