sp|F4IPY2|SYCM_ARATH ----> Cysteine--tRNA ligase, chloroplastic/mitochondrial
Intron 1 GTTTACATTC ... ACTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28 | 9 | 2 | 5 |
| A2 | 10 | 9 | 1 | 1 |
| A3 | 28.57 | 5 | 3 | 1 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 33.33 | 3 | 1 | 2 |
| A6 | 33.33 | 7 | 4 | 3 |
| A7 | 31.03 | 10 | 6 | 3 |
| A8 | 25 | 18 | 6 | 6 |
| A9 | 23.08 | 20 | 7 | 5 |
| A10 | 6.67 | 14 | 0 | 2 |
>TRINITY_DN40405_c0_g1_i1 from sample A6 / Example spliced isoformGCCAGCGGCTTCCAACGGTAGCAGATTACTCAAAGACACAGCCTATAGCAAATCCTGTGTAGGTAGCCCACTACATAATACATACATCTAGTTGAAATGAATCTGGGAGCATCTCACCCAATGCTGAGAGTCAAATCAATGCCAATAATCAGTAATTTTCTCCATTCATTTTCTGGAAATCCAAGGGCCACCGTATTCTG
CATCCCATTTTCTTCAAGAAACTCCAACTGTCGCTTTTTCAAGCCTTCATCGACTCCTCGTTTGCCACCAATTTTAAAATTAAGGCCGCACGGCTTCTCCGGTATCAAATCCCACGCAGTTGTAAAACACAGAGGATTTTGTGTGGATTCGAGTTTAGAGTCTTCTAATGCTGGCAGCGGGGTTTCTGGAGAAAACAATA
AGAAAATTGTGGAAACGGAGTTGTATATATTTAACACGATGAGCAAGAAGAAGGAGTTATTTAAGGCCAGAGAGCCCGGAAAAGTGGGCATGTACGTTTGCGGAGTTACTGCGTATGATTACAGCCATATTGGCCATGCTCGAGTTTATGTTACATTCGACATTCTTTATCGATACTTACAGCATTTGGGATATGAAGTG
AAGTACGTTCGGAATTTTACAGATATTGATGACAAGATAATTGCTAGAGCACATGACTTGGGAGAAAATCCATTAAGTTTGAGCAACCGATTTTGCAAGGAGTTCCAAGTTGACATGGTGGAGCTAAATTGTCTTCCTCCTTCTGTAGAACCTCGTGTAACTGATCACATTAATCAAATCATAGAAATGATTCAACAGAT
TCTAAGAAATGGCTATGCATATGTGGTTGAGAGTGGTGATGTGTACTTCTCTGTCGAAAAATATCCAAAGTATGGTTGTTTGTCTGGACGCAAATTGGATGACAATCGTGCAGGGGAACGAATTGCAGTAGATTCACGCAAGCAAAATCCTGCAGACTTTGCTTTATGGAAAAGTGCAAAGCCTGGTGAGCCTTTTTGGG
ATAGTCCCTGGGGTCCTGGTCGACCGGGCTGGCATATTGAGTGCAGTGCAATGAGTGCAGCACATTTGGGTTACTGTTTTGATATTCATGGTGGAGGGGTGGATCTTATATTTCCCCATCATGAAAATGAGATAGCTCAGAGCTGTGCTGCTTGCAATGACAGCGATATACATTACTGGATTCATAATGGCTTTGTAACA
GTTGATGCTGAGAAAATGTCTAAATCTTTAGGCAACTTTTTCACAATTCGTGAGGTTCTAGAATCTTATCATCCATTGGCTTTGCGACTGTTTTTAAGTGGCACACACTACCGTTCTCAACTGAACTACTCAAAATCTCAATTAGAAAGTGCATCGGAACGCCTTTTTTATATCTACCAGACTTTGAAGGACTGTGAAGA
GTGTCTGTCTGGGCATGTCAGGCAAAGCAATGGTCAACCTATCCCAAATGATATCCAAGACTGCATTTACAGAATACACAATGCTTTTGCATCGTCAATGTCAAATGATTTGCATATAGCCATGGCTTTGGATGCACTATCAGAGCCGTTGAAGATCATGAATGATCTAATGTTTACTCGCCAGGGCCGTAAACAAAAGT
TAAGAATGGAATCTTTGGATTCCTTGGAAGTGGAAGTCAGGGATATATTAAGTGATCTTGGGCTAATGTCTTCAAGCTACTCAGAGGTATTATTGCAGTTGAAAAGTAAGGCATTAAAAAGGGCAGGGCTTACTGAGGATGAAGTGCTGCAAACCATAAAAGAAAGGGCAGATGCAAGGGCTGCTAAAAACTATTCAGAG
TCAGACAGGATCAGGAGTAAATTAGCTGTTTTGGGCATTGCCCTGATGGATGGCCCCAGTGATACAACCTGGCGCCCGGCCATTCCTCTTGAAGAAGAAGAGGATGCTACTATCTAATACACTTGTTTATGGTGGAGAAAACATCTAATGGAAATATTTCTCAGTTGTATGTGTGGAATCCATGTGCTTCCCTTTAGTAA
AGAGCAGACATATTTTTGAAGAGTCATGGATTTTCCTGTTACCTCCTTGCAGTAGGTGTCAACCCTCGTGGCTATTTTTTTTCTTCCATTTCAAATATCCTTGCATATATATAGTCCTGGTGTATGTACAATGCCTGATACAAATTTTGGTCAGCACTAGGGTTCAATTTATAGTTGTGTAACATAAGATGCGGCACAGT
TCAGGATGAGCATTGACATTGACAATATGATGAGAGCAACGTCTTCTTGGAGAGAAGAATTCAGTTTCCACTAAAGTATGTATGCAGCTGAATCTGAATCCGGGCATAGTTGGTCGCCACATTTTACCCTTAATGTTTTTTTCCAGTTAACTTCTTTGAAAGGTGCCTGCTGTGAGGCAAGCTGCTAGAAGTTAAATAAA
GGTAAATGTCCCATTCAAGCAACAAATTCTTTTCAATTTGAAGGGTTGAAACTTGTGCTGATATTGCTAATCTATTACTCTATAAATATTATTTGCAAGTTGAAAATTTGTTGCAATACGAGAATACTCATTTCTTG
>TRINITY_DN40405_c0_g1_i3 from sample A6 / Example unspliced isoform:GCCAGCGGCTTCCAACGGTAGCAGATTACTCAAAGACACAGCCTATAGCAAATCCTGTGTAGGTAGCCCACTACATAATACATACATCTAGTTGAAATGAATCTGGGAGCATCTCACCCAATGCTGAGAGTCAAATCAATGCCAATAATCAGTAATTTTCTCCATTCATTTTCTGGAAATCCAAGGGCCACCGTATTCTG
CATCCCATTTTCTTCAAGAAACTCCAACTGTCGCTTTTTCAAGCCTTCATCGACTCCTCGTTTGCCACCAATTTTAAAATTAAGGCCGCACGGCTTCTCCGGTATCAAATCCCACGCAGTTGTAAAACACAGAGGATTTTGTGTGGATTCGAGTTTAGAGTCTTCTAATGCTGGCAGCGGGGTTTCTGGAGAAAACAATA
AGAAAATTGTGGAAACGGAGTTGTATATATTTAACACGATGAGCAAGAAGAAGGAGTTATTTAAGGCCAGAGAGCCCGGAAAAGTGGGCATGTACGTTTGCGGAGTTACTGCGTATGATTACAGCCATATTGGCCATGCTCGAGTTTATGTTACATTCGACATTCTTTATCGATACTTACAGCATTTGGGATATGAAGTG
AAGTACGTTCGGAATTTTACAGATATTGATGACAAGATAATTGCTAGAGCACATGACTTGGGAGAAAATCCATTAAGTTTGAGCAACCGATTTTGCAAGGAGTTCCAAGTTGACATGGTGGAGCTAAATTGTCTTCCTCCTTCTGTAGAACCTCGTGTAACTGATCACATTAATCAAATCATAGAAATGATTCAACAGAT
TCTAAGAAATGGCTATGCATATGTGGTTGAGAGTGGTGATGTGTACTTCTCTGTCGAAAAATATCCAAAGTATGGTTGTTTGTCTGGACGCAAATTGGATGACAATCGTGCAGGGGAACGAATTGCAGTAGATTCACGCAAGCAAAATCCTGCAGACTTTGCTTTATGGAAAAGTGCAAAGCCTGGTGAGCCTTTTTGGG
ATAGTCCCTGGGGTCCTGGTCGACCGGGCTGGCATATTGAGTGCAGTGCAATGAGTGCAGCACATTTGGGTTACTGTTTTGATATTCATGGTGGAGGGGTGGATCTTATATTTCCCCATCATGAAAATGAGATAGCTCAGAGCTGTGCTGCTTGCAATGACAGCGATATACATTACTGGATTCATAATGGCTTTGTAACA
GTTGATGCTGAGAAAATGTCTAAATCTTTAGGCAACTTTTTCACAATTCGTGAGGTTCTAGAATCTTATCATCCATTGGCTTTGCGACTGTTTTTAAGTGGCACACACTACCGTTCTCAACTGAACTACTCAAAATCTCAATTAGAAAGTGCATCGGAACGCCTTTTTTATATCTACCAGACTTTGAAGGACTGTGAAGA
GTGTCTGTCTGGGCATGTCAGGCAAAGCAATGGTCAACCTATCCCAAATGATATCCAAGACTGCATTTACAGAATACACAATGCTTTTGCATCGTCAATGTCAAATGATTTGCATATAGCCATGGCTTTGGATGCACTATCAGAGCCGTTGAAGATCATGAATGATCTAATGTTTACTCGCCAGgtttacattcatattg
atatttattttatgcagttatgcttgccaacaataattgatttctaggggatgacagataatgatagtttgcttccgttttgagatatctgcaaggaatattcttggatactttttcaattcattgcacatatataaacatggatacaagtcagtgaaatctttataacatatgctcaggattcctcaagtgtaattcat
aaaactatgtttccttttctgttattattttttttgatatcagaaagatctatcttttctcgaacatgatccatgcattgacggtacttgtgcagGGCCGTAAACAAAAGTTAAGAATGGAATCTTTGGATTCCTTGGAAGTGGAAGTCAGGGATATATTAAGTGATCTTGGGCTAATGTCTTCAAGCTACTCAGAGGTA
TTATTGCAGTTGAAAAGTAAGGCATTAAAAAGGGCAGGGCTTACTGAGGATGAAGTGCTGCAAACCATAAAAGAAAGGGCAGATGCAAGGGCTGCTAAAAACTATTCAGAGTCAGACAGGATCAGGAGTAAATTAGCTGTTTTGGGCATTGCCCTGATGGATGGCCCCAGTGATACAACCTGGCGCCCGGCCATTCCTCT
TGAAGAAGAAGAGGATGCTACTATCTAATACACTTGTTTATGGTGGAGAAAACATCTAATGGAAATATTTCTCAGTTGTATGTGTGGAATCCATGTGCTTCCCTTTAGTAAAGAGCAGACATATTTTTGAAGAGTCATGGATTTTCCTGTTACCTCCTTGCAGTAGGTGTCAACCCTCGTGGCTATTTTTTTTCTTCCAT
TTCAAATATCCTTGCATATATATAGTCCTGGTGTATGTACAATGCCTGATACAAATTTTGGTCAGCACTAGGGTTCAATTTATAGTTGTGTAACATAAGATGCGGCACAGTTCAGGATGAGCATTGACATTGACAATATGATGAGAGCAACGTCTTCTTGGAGAGAAGAATTCAGTTTCCACTAAAGTATGTATGCAGCT
GAATCTGAATCCGGGCATAGTTGGTCGCCACATTTTACCCTTAATGTTTTTTTCCAGTTAACTTCTTTGAAAGGTGCCTGCTGTGAGGCAAGCTGCTAGAAGTTAAATAAAGGTAAATGTCCCATTCAAGCAACAAATTCTTTTCAATTTGAAGGGTTGAAACTTGTGCTGATATTGCTAATCTATTACTCTATAAATAT
TATTTGCAAGTTGAAAATTTGTTGCAATACGAGAATACTCATTTCTTG
Intron 2 GTCATTGACA ... CAAGGGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.59 | 11 | 9 | 8 |
| A2 | 20 | 10 | 2 | 3 |
| A3 | 26.32 | 14 | 5 | 5 |
| A4 | 15.15 | 14 | 3 | 2 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 25 | 6 | 4 | 0 |
| A7 | 16.67 | 15 | 2 | 4 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 12 | 11 | 2 | 1 |
| A10 | 26.83 | 15 | 7 | 4 |
>TRINITY_DN125800_c2_g4_i3 from sample A1 / Example spliced isoformCCAAATCTGCCTTTGATTCAGAGGCAGAGGAAGCCAGCGGCTTCCAACGGTAGCAGATTACTCAAAGACACAGCCTATAGCAAATCCTGTGTAGGTAGCCCACTACATAATACATACATCTAGTTGAAATGAATCTGGGAGCATCTCACCCAATGCTGAGAGTCAAATCAATGCCAATAATCAGTAATTTTCTCCATTCA
TTTTCTGGAAATCCAAGGGCCACCGTATTCTGCATCCCATTTTCTTCAAGAAACTCCAACTGTCGCTTTTTCAAGCCTTCATCGACTCCTCGTTTGCCACCAATTTTAAAATTAAGGCCGCACGGCTTCTCCGGTATCAAATCCCACGCAGTTGTAAAACACAGAGGATTTTGTGTGGATTCGAGTTTAGAGTCTTCTAA
TGCTGGCAGCGGGGTTTCTGGAGAAAACAATAAGAAAATTGTGGAAACGGAGTTGTATATATTTAACACGATGAGCAAGAAGAAGGAGTTATTTAAGGCCAGAGAGCCCGGAAAAGTGGGCATGTACGTTTGCGGAGTTACTGCGTATGATTACAGCCATATTGGCCATGCTCGAGTTTATGTTACATTCGACATTCTTT
ATCGATACTTACAGCATTTGGGATATGAAGTGAAGTACGTTCGGAATTTTACAGATATTGATGACAAGATAATTGCTAGAGCACATGACTTGGGAGAAAATCCATTAAGTTTGAGCAACCGATTTTGCAAGGAGTTCCAAGTTGACATGGTGGAGCTAAATTGTCTTCCTCCTTCTGTAGAACCTCGTGTAACTGATCAC
ATTAATCAAATCATAGAAATGATTCAACAGATTCTAAGAAATGGCTATGCATATGTGGTTGAGAGTGGTGATGTGTACTTCTCTGTCGAAAAATATCCAAAGTATGGTTGTTTGTCTGGACGCAAATTGGATGACAATCGTGCAGGGGAACGAATTGCAGTAGATTCACGCAAGCAAAATCCTGCAGACTTTGCTTTATG
GAAAAGTGCAAAGCCTGGTGAGCCTTTTTGGGATAGTCCCTGGGGTCCTGGTCGACCGGGCTGGCATATTGAGTGCAGTGCAATGAGTGCAGCACATTTGGGTTACTGTTTTGATATTCATGGTGGAGGGGTGGATCTTATATTTCCCCATCATGAAAATGAGATAGCTCAGAGCTGTGCTGCTTGCAATGACAGCGATA
TACATTACTGGATTCATAATGGCTTTGTAACAGTTGATGCTGAGAAAATGTCTAAATCTTTAGGCAACTTTTTCACAATTCGTGAGGTTCTAGAATCTTATCATCCATTGGCTTTGCGACTGTTTTTAAGTGGCACACACTACCGTTCTCAACTGAACTACTCAAAATCTCAATTAGAAAGTGCATCGGAACGCCTTTTT
TATATCTACCAGACTTTGAAGGACTGTGAAGAGTGTCTGTCTGGGCATGTCAGGCAAAGCAATGGTCAACCTATCCCAAATGATATCCAAGACTGCATTTACAGAATACACAATGCTTTTGCATCGTCAATGTCAAATGATTTGCATATAGCCATGGCTTTGGATGCACTATCAGAGCCGTTGAAGATCATGAATGATCT
AATGTTTACTCGCCAGGGCCGTAAACAAAAGTTAAGAATGGAATCTTTGGATTCCTTGGAAGTGGAAGTCAGGGATATATTAAGTGATCTTGGGCTAATGTCTTCAAGCTACTCAGAGGTATTATTGCAGTTGAAAAGTAAGGCATTAAAAAGGGCAGGGCTTACTGAGGATGAAGTGCTGCAAACCATAAAAGAAAGGG
CAGATGCAAGGGCTGCTAAAAACTATTCAGAGTCAGACAGGATCAGGAGTAAATTAGCTGTTTTGGGCATTGCCCTGATGGATGGCCCCAGTGATACAACCTGGCGCCCGGCCATTCCTCTTGAAGAAGAAGAGGATGCTACTATCTAATACACTTGTTTATGGTGGAGAAAACATCTAATGGAAATATTTCTCAGTTGT
ATGTGTGGAATCCATGTGCTTCCCTTTAGTAAAGAGCAGACATATTTTTGAAGAGTCATGGATTTTCCTTATTTACCTCCTTGCAGTAGGTGTCAACCCTCATGGCTATTTTTTTTCTTCCATTTCAAATATCCTTGCATATATATAGTCCTGGTGTATGTACAATGCCTGATACAAATTTTGGTCAGCACTAGGGTTCA
ATTTATAGTTGTGTAACATAAGATGCGGCACAGTTCAGGATGAGCA
>TRINITY_DN125800_c2_g4_i2 from sample A1 / Example unspliced isoform:CCAAATCTGCCTTTGATTCAGAGGCAGAGGAAGCCAGCGGCTTCCAACGGTAGCAGATTACTCAAAGACACAGCCTATAGCAAATCCTGTGTAGGTAGCCCACTACATAATACATACATCTAGTTGAAATGAATCTGGGAGCATCTCACCCAATGCTGAGAGTCAAATCAATGCCAATAATCAGTAATTTTCTCCATTCA
TTTTCTGGAAATCCAAGGGCCACCGTATTCTGCATCCCATTTTCTTCAAGAAACTCCAACTGTCGCTTTTTCAAGCCTTCATCGACTCCTCGTTTGCCACCAATTTTAAAATTAAGGCCGCACGGCTTCTCCGGTATCAAATCCCACGCAGTTGTAAAACACAGAGGATTTTGTGTGGATTCGAGTTTAGAGTCTTCTAA
TGCTGGCAGCGGGGTTTCTGGAGAAAACAATAAGAAAATTGTGGAAACGGAGTTGTATATATTTAACACGATGAGCAAGAAGAAGGAGTTATTTAAGGCCAGAGAGCCCGGAAAAGTGGGCATGTACGTTTGCGGAGTTACTGCGTATGATTACAGCCATATTGGCCATGCTCGAGTTTATGTTACATTCGACATTCTTT
ATCGATACTTACAGCATTTGGGATATGAAGTGAAGTACGTTCGGAATTTTACAGATATTGATGACAAGgtcattgacatatcagagacaaaatatgcactgaatgcaagggatagATAATTGCTAGAGCACATGACTTGGGAGAAAATCCATTAAGTTTGAGCAACCGATTTTGCAAGGAGTTCCAAGTTGACATGGTGG
AGCTAAATTGTCTTCCTCCTTCTGTAGAACCTCGTGTAACTGATCACATTAATCAAATCATAGAAATGATTCAACAGATTCTAAGAAATGGCTATGCATATGTGGTTGAGAGTGGTGATGTGTACTTCTCTGTCGAAAAATATCCAAAGTATGGTTGTTTGTCTGGACGCAAATTGGATGACAATCGTGCAGGGGAACGA
ATTGCAGTAGATTCACGCAAGCAAAATCCTGCAGACTTTGCTTTATGGAAAAGTGCAAAGCCTGGTGAGCCTTTTTGGGATAGTCCCTGGGGTCCTGGTCGACCGGGCTGGCATATTGAGTGCAGTGCAATGAGTGCAGCACATTTGGGTTACTGTTTTGATATTCATGGTGGAGGGGTGGATCTTATATTTCCCCATCA
TGAAAATGAGATAGCTCAGAGCTGTGCTGCTTGCAATGACAGCGATATACATTACTGGATTCATAATGGCTTTGTAACAGTTGATGCTGAGAAAATGTCTAAATCTTTAGGCAACTTTTTCACAATTCGTGAGGTTCTAGAATCTTATCATCCATTGGCTTTGCGACTGTTTTTAAGTGGCACACACTACCGTTCTCAAC
TGAACTACTCAAAATCTCAATTAGAAAGTGCATCGGAACGCCTTTTTTATATCTACCAGACTTTGAAGGACTGTGAAGAGTGTCTGTCTGGGCATGTCAGGCAAAGCAATGGTCAACCTATCCCAAATGATATCCAAGACTGCATTTACAGAATACACAATGCTTTTGCATCGTCAATGTCAAATGATTTGCATATAGCC
ATGGCTTTGGATGCACTATCAGAGCCGTTGAAGATCATGAATGATCTAATGTTTACTCGCCAGGGCCGTAAACAAAAGTTAAGAATGGAATCTTTGGATTCCTTGGAAGTGGAAGTCAGGGATATATTAAGTGATCTTGGGCTAATGTCTTCAAGCTACTCAGAGGTATTATTGCAGTTGAAAAGTAAGGCATTAAAAAG
GGCAGGGCTTACTGAGGATGAAGTGCTGCAAACCATAAAAGAAAGGGCAGATGCAAGGGCTGCTAAAAACTATTCAGAGTCAGACAGGATCAGGAGTAAATTAGCTGTTTTGGGCATTGCCCTGATGGATGGCCCCAGTGATACAACCTGGCGCCCGGCCATTCCTCTTGAAGAAGAAGAGGATGCTACTATCTAATACA
CTTGTTTATGGTGGAGAAAACATCTAATGGAAATATTTCTCAGTTGTATGTGTGGAATCCATGTGCTTCCCTTTAGTAAAGAGCAGACATATTTTTGAAGAGTCATGGATTTTCCTTATTTACCTCCTTGCAGTAGGTGTCAACCCTCATGGCTATTTTTTTTCTTCCATTTCAAATATCCTTGCATATATATAGTCCTG
GTGTATGTACAATGCCTGATACAAATTTTGGTCAGCACTAGGGTTCAATTTATAGTTGTGTAACATAAGATGCGGCACAGTTCAGGATGAGCA