NA ----> NA
Intron 1 GTAATGTTTC ... ATTGATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.7 | 13 | 1 | 0 |
| A2 | 9.68 | 14 | 3 | 0 |
| A3 | 11.11 | 12 | 0 | 3 |
| A4 | 9.09 | 10 | 1 | 1 |
| A5 | 33.33 | 4 | 0 | 4 |
| A6 | 10 | 9 | 0 | 2 |
| A7 | 20 | 32 | 5 | 11 |
| A8 | 24.73 | 35 | 9 | 14 |
| A9 | 21.74 | 18 | 4 | 6 |
| A10 | 36.36 | 14 | 11 | 5 |
>TRINITY_DN38709_c1_g1_i2 from sample A8 / Example spliced isoformCAGCAGCAAGCTGCCGCAAGCTCTACGAAGGGCAATGGTCATCCTGAATGCAATGTATCTGATCCTCCACTTGTGAACGGTCCTTCAACACCAATGCGCTATGTACCAAGGCCAAAGAATGCACCTACTGAAATGTCAGGAAATGGAGATCCTTTTTCTCTTTCCTTAGCAACAGGCTTAAGTTGTTCAGAGGAGAGAGG
ATTAGAGCAGAAGGAAAATTGCACAGAATCTAACAGAGTGGGTGCTCCAAAGAGTTTGACATATTACCGACATCATCCAATGAAACCAAATCAGCTGGCACCGCCATTCTCAAAGAATTCCCAGAAAAGAATTGTGCCCGAACTGAGGCAGGAAGGCATGGAGCCTCATAAAGAAAACATGCTTTCACTCTCTTTGGTCA
AGCCTGAGAGCATGAAGCCATTGGCGCAGAAGTCATCAGGATCTGATCATCATCGGACATTTGGCACAATAGCTAGGACTAGGACATCAATATCTGAAGGGATTGATATGCAGCATCAAAATTTTCATGAACAGGTGTCTTTTCAGACTATCAATTCTGTGGATTGCAGCTCAGCAAATATGGCAGATAATCTGCAATCA
TCTAGAAGCATATCTGATGCATGTGCATTCAGTGCTTTGCTCTGTGGGAGTACATTGCAGGAAAGTGCCTTTGCATTACAGAATAATGTTCCTGAATTGGGAATGTCATCTCCAGATGGCAGAACAAGCCAGCAGCCTACAAATTTCAACACACCAATGGAGAGCCAGCGGCCTACAACTTTTAACACGCCAAACTGTAT
ACCTATTCTTCAAACTCCTATGGCAAATGAAGGACATCGGCTTGTGAGCAATGAAGGCAATCTGTACCTACATTGCAGTGATTCAATATCAGGTAAGAAAAGGAAATCATTAAGCTATACAAAACAAGAAGCAGATTCAGCAGGAAGGTTGACTTGGGATAAAGATTGTCTTCTGAAAGTAAGAGAACAGTTGGAAGACA
GTGAGAATTCTTGTAAAGAAGAAAGATTCTCTCAAAAGAGACAAGAAGCTGAGCATATCAACTCTCCTAATCATGATTCTGTCAATAGAGATTCCTTAAAAAAACACATTATATTCAATGGCAGTGTTGAAACAGAGTTTCCAGGCACAGAGAAAGGTAATAAGAAGGGTAAGCTAGGAGAATTGCCAGAGCCTGTTGCA
CTAGAGCTGCATTGTAACAATGCAATCAATTATTCAATAGGTTGTACGGGATATCAGGTTTCATCAATGCCTGATATGAACAGGCTTTTTGAATTAAAATTAGGCAATATTTCCACATCATCATTATCAGGAGGAGCAACTGAGGCTTTGCCAAACCAATCAGTTAATAAAGAAAATAACATGGTAGTTTCAAGTTTGAA
TGGTCATCAATGTCGTTCCTTAGGGTCAAGACTCCTTACATTTCCTGCATATTCTCCTATGCCAACAGCTTTATCTACGTTTTCATCTGGTGATCCTTCTTTTCCCCAGTCTTTGGTGGATACAAGCAAGAGAGGAAATTCCCATACAGGTGACAGTAGTAAAAGTACACAGAGAATGTCACCCATGGATTCCAATTGGG
GCAAATTTCTGGCTCTGTCTACTGCTCAAGTTGATCAGTCAAAGAAAGAGGCACTCGTGCCTTATCAGCAACGTTTTATAAACCTGCAAGCCTTTCTAAAGCAATGTGATGAGCCAAATGAGGACCATCTCCGAACTATTCGATCTTTATCTGCCTCTGGTCGGAGTGGGCACGCTGTTAATCTGGAAACTAGGGCTATT
ATGCTTTCCTTGGAAGAAGTTAAAGAGTTGCGTCGGATGAAGATGCTCAATGTCTTTGGAAAGGGTATTCCAAAAGGTTTAAATGATGCAGGTGCTACTCCACAAGGTCCTCGTTTACCTGCACCGGGTGCTGCACAAACTCTGAAACTGGTGACTGGATCCTAAGGTTGCCTAGGACAGATTTCAAAAGAAGGTTCACA
ACACTTCACGAGTGGTGTAGCTGGGTTTCTGATGTTTCTTTTAAAGTGCAACTTAATGCAGTGGCTTCTCCAGAAGTAGAACCTCAGAAAATTCCTGCATTCAATTAAACTCTTCTGAATATTGATGTAACACAAAAAATCTTGAAGCATGGAGACTGCATATTCTACAGTTCTCCAGAGACCAGGTAATTAGCACCCAC
TGCAGATGTAAGTGTTATTTTGGACGATGATTCAGATCAGATATTCTCTAAAGAGATGTTTCTTAATTGCAATTGCAAGTGTTATTTTGGACGATGATTCAGATCAGATATTCTCTAAAGAGATGTTTCTTAATTGCAATTGCAATTGCAATTGAATTAGGGTCACAGAATGTTGATTTTGCATATTGGCAGATACTTGT
TGAAGTTTGGATCCTCATTACATTGATTAAATAAAGAAAATCAGCAATGCGTGCCATCTTGTTTAAATTGACAATTTTTTTATCATCTTCTTAATGTTGGTGCTAGGCATGGTGTTGCTTTTAAGGCCATATTAATTAGAATTGTCCATTTCATGTTGTTCG
>TRINITY_DN38709_c1_g1_i3 from sample A8 / Example unspliced isoform:CAGCAGCAAGCTGCCGCAAGCTCTACGAAGGGCAATGGTCATCCTGAATGCAATGTATCTGATCCTCCACTTGTGAACGGTCCTTCAACACCAATGCGCTATGTACCAAGGCCAAAGAATGCACCTACTGAAATGTCAGGAAATGGAGATCCTTTTTCTCTTTCCTTAGCAACAGGCTTAAGTTGTTCAGAGGAGAGAGG
ATTAGAGCAGAAGGAAAATTGCACAGAATCTAACAGAGTGGGTGCTCCAAAGAGTTTGACATATTACCGACATCATCCAATGAAACCAAATCAGCTGGCACCGCCATTCTCAAAGAATTCCCAGAAAAGAATTGTGCCCGAACTGAGGCAGGAAGGCATGGAGCCTCATAAAGAAAACATGCTTTCACTCTCTTTGGTCA
AGCCTGAGAGCATGAAGCCATTGGCGCAGAAGTCATCAGGATCTGATCATCATCGGACATTTGGCACAATAGCTAGGACTAGGACATCAATATCTGAAGGGATTGATATGCAGCATCAAAATTTTCATGAACAGGTGTCTTTTCAGACTATCAATTCTGTGGATTGCAGCTCAGCAAATATGGCAGATAATCTGCAATCA
TCTAGAAGCATATCTGATGCATGTGCATTCAGTGCTTTGCTCTGTGGGAGTACATTGCAGGAAAGTGCCTTTGCATTACAGAATAATGTTCCTGAATTGGGAATGTCATCTCCAGATGGCAGAACAAGCCAGCAGCCTACAAATTTCAACACACCAATGGAGAGCCAGCGGCCTACAACTTTTAACACGCCAAACTGTAT
ACCTATTCTTCAAACTCCTATGGCAAATGAAGGACATCGGCTTGTGAGCAATGAAGGCAATCTGTACCTACATTGCAGTGATTCAATATCAGGTAAGAAAAGGAAATCATTAAGCTATACAAAACAAGAAGCAGATTCAGCAGGAAGGTTGACTTGGGATAAAGATTGTCTTCTGAAAGTAAGAGAACAGTTGGAAGACA
GTGAGAATTCTTGTAAAGAAGAAAGATTCTCTCAAAAGAGACAAGAAGCTGAGCATATCAACTCTCCTAATCATGATTCTGTCAATAGAGATTCCTTAAAAAAACACATTATATTCAATGGCAGTGTTGAAACAGAGTTTCCAGGCACAGAGAAAGGTAATAAGAAGGGTAAGCTAGGAGAATTGCCAGAGCCTGTTGCA
CTAGAGCTGCATTGTAACAATGCAATCAATTATTCAATAGGTTGTACGGGATATCAGGTTTCATCAATGCCTGATATGAACAGGCTTTTTGAATTAAAATTAGGCAATATTTCCACATCATCATTATCAGGAGGAGCAACTGAGGCTTTGCCAAACCAATCAGTTAATAAAGAAAATAACATGGTAGTTTCAAGTTTGAA
TGGTCATCAATGTCGTTCCTTAGGGTCAAGACTCCTTACATTTCCTGCATATTCTCCTATGCCAACAGCTTTATCTACGTTTTCATCTGGTGATCCTTCTTTTCCCCAGTCTTTGGTGGATACAAGCAAGAGAGGAAATTCCCATACAGGTGACAGTAGTAAAAGTACACAGAGAATGTCACCCATGGATTCCAATTGGG
GCAAATTTCTGGCTCTGTCTACTGCTCAAGTTGATCAGTCAAAGAAAGAGGCACTCGTGCCTTATCAGCAACGTTTTATAAACCTGCAAGCCTTTCTAAAGCAATGTGATGAGCCAAATGAGGACCATCTCCGAACTATTCGATCTTTATCTGCCTCTGGTCGGAGTGGGCACGCTGTTAATCTGGAAACTAGGGCTATT
ATGCTTTCCTTGGAAGAAGgtaatgtttcacatggtgcctgatataaatgttttttagttactaacagttgaatctagaatcgtaattcagaaactaaagctcataactttggaggaagttaaactcgatacctgtgatctaataggctaattgcaaagtgtcaattgcagttgtttaaaatcatacttgacaaattgtg
cagtggtgatgtgtagtgttttgttcaaagatggctctatttcagcagtgaaacctaatacgtgttttttgtaactaagattatgggtctgcccatgtgtcacgtttcattcatgttcttggaaagttttgttccttttgttctcgtgacaattttacttcatttattgattcagTTAAAGAGTTGCGTCGGATGAAGAT
GCTCAATGTCTTTGGAAAGGGTATTCCAAAAGGTTTAAATGATGCAGGTGCTACTCCACAAGGTCCTCGTTTACCTGCACCGGGTGCTGCACAAACTCTGAAACTGGTGACTGGATCCTAAGGTTGCCTAGGACAGATTTCAAAAGAAGGTTCACAACACTTCACGAGTGGTGTAGCTGGGTTTCTGATGTTTCTTTTAA
AGTGCAACTTAATGCAGTGGCTTCTCCAGAAGTAGAACCTCAGAAAATTCCTGCATTCAATTAAACTCTTCTGAATATTGATGTAACACAAAAAATCTTGAAGCATGGAGACTGCATATTCTACAGTTCTCCAGAGACCAGGTAATTAGCACCCACTGCAGATGTAAGTGTTATTTTGGACGATGATTCAGATCAGATAT
TCTCTAAAGAGATGTTTCTTAATTGCAATTGCAAGTGTTATTTTGGACGATGATTCAGATCAGATATTCTCTAAAGAGATGTTTCTTAATTGCAATTGCAATTGCAATTGAATTAGGGTCACAGAATGTTGATTTTGCATATTGGCAGATACTTGTTGAAGTTTGGATCCTCATTACATTGATTAAATAAAGAAAATCAG
CAATGCGTGCCATCTTGTTTAAATTGACAATTTTTTTATCATCTTCTTAATGTTGGTGCTAGGCATGGTGTTGCTTTTAAGGCCATATTAATTAGAATTGTCCATTTCATGTTGTTCG
Intron 2 GTAAGCCCAG ... ATAAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.34 | 10 | 0 | 2 |
| A2 | 16.66 | 3.8 | 0 | 1 |
| A3 | 55.24 | 2.5 | 0 | 3 |
| A4 | 12.5 | 5.5 | 0 | 1 |
| A5 | 0 | 4 | 0 | 0 |
| A6 | 3.85 | 11.8 | 0 | 0.5 |
| A7 | 3.57 | 12.8 | 0 | 0.5 |
| A8 | 16.28 | 25.5 | 0 | 5 |
| A9 | 31.34 | 16 | 4 | 8 |
| A10 | 1.85 | 25.8 | 0 | 0.5 |
>TRINITY_DN38709_c1_g1_i2 from sample A8 / Example spliced isoformCAGCAGCAAGCTGCCGCAAGCTCTACGAAGGGCAATGGTCATCCTGAATGCAATGTATCTGATCCTCCACTTGTGAACGGTCCTTCAACACCAATGCGCTATGTACCAAGGCCAAAGAATGCACCTACTGAAATGTCAGGAAATGGAGATCCTTTTTCTCTTTCCTTAGCAACAGGCTTAAGTTGTTCAGAGGAGAGAGG
ATTAGAGCAGAAGGAAAATTGCACAGAATCTAACAGAGTGGGTGCTCCAAAGAGTTTGACATATTACCGACATCATCCAATGAAACCAAATCAGCTGGCACCGCCATTCTCAAAGAATTCCCAGAAAAGAATTGTGCCCGAACTGAGGCAGGAAGGCATGGAGCCTCATAAAGAAAACATGCTTTCACTCTCTTTGGTCA
AGCCTGAGAGCATGAAGCCATTGGCGCAGAAGTCATCAGGATCTGATCATCATCGGACATTTGGCACAATAGCTAGGACTAGGACATCAATATCTGAAGGGATTGATATGCAGCATCAAAATTTTCATGAACAGGTGTCTTTTCAGACTATCAATTCTGTGGATTGCAGCTCAGCAAATATGGCAGATAATCTGCAATCA
TCTAGAAGCATATCTGATGCATGTGCATTCAGTGCTTTGCTCTGTGGGAGTACATTGCAGGAAAGTGCCTTTGCATTACAGAATAATGTTCCTGAATTGGGAATGTCATCTCCAGATGGCAGAACAAGCCAGCAGCCTACAAATTTCAACACACCAATGGAGAGCCAGCGGCCTACAACTTTTAACACGCCAAACTGTAT
ACCTATTCTTCAAACTCCTATGGCAAATGAAGGACATCGGCTTGTGAGCAATGAAGGCAATCTGTACCTACATTGCAGTGATTCAATATCAGGTAAGAAAAGGAAATCATTAAGCTATACAAAACAAGAAGCAGATTCAGCAGGAAGGTTGACTTGGGATAAAGATTGTCTTCTGAAAGTAAGAGAACAGTTGGAAGACA
GTGAGAATTCTTGTAAAGAAGAAAGATTCTCTCAAAAGAGACAAGAAGCTGAGCATATCAACTCTCCTAATCATGATTCTGTCAATAGAGATTCCTTAAAAAAACACATTATATTCAATGGCAGTGTTGAAACAGAGTTTCCAGGCACAGAGAAAGGTAATAAGAAGGGTAAGCTAGGAGAATTGCCAGAGCCTGTTGCA
CTAGAGCTGCATTGTAACAATGCAATCAATTATTCAATAGGTTGTACGGGATATCAGGTTTCATCAATGCCTGATATGAACAGGCTTTTTGAATTAAAATTAGGCAATATTTCCACATCATCATTATCAGGAGGAGCAACTGAGGCTTTGCCAAACCAATCAGTTAATAAAGAAAATAACATGGTAGTTTCAAGTTTGAA
TGGTCATCAATGTCGTTCCTTAGGGTCAAGACTCCTTACATTTCCTGCATATTCTCCTATGCCAACAGCTTTATCTACGTTTTCATCTGGTGATCCTTCTTTTCCCCAGTCTTTGGTGGATACAAGCAAGAGAGGAAATTCCCATACAGGTGACAGTAGTAAAAGTACACAGAGAATGTCACCCATGGATTCCAATTGGG
GCAAATTTCTGGCTCTGTCTACTGCTCAAGTTGATCAGTCAAAGAAAGAGGCACTCGTGCCTTATCAGCAACGTTTTATAAACCTGCAAGCCTTTCTAAAGCAATGTGATGAGCCAAATGAGGACCATCTCCGAACTATTCGATCTTTATCTGCCTCTGGTCGGAGTGGGCACGCTGTTAATCTGGAAACTAGGGCTATT
ATGCTTTCCTTGGAAGAAGTTAAAGAGTTGCGTCGGATGAAGATGCTCAATGTCTTTGGAAAGGGTATTCCAAAAGGTTTAAATGATGCAGGTGCTACTCCACAAGGTCCTCGTTTACCTGCACCGGGTGCTGCACAAACTCTGAAACTGGTGACTGGATCCTAAGGTTGCCTAGGACAGATTTCAAAAGAAGGTTCACA
ACACTTCACGAGTGGTGTAGCTGGGTTTCTGATGTTTCTTTTAAAGTGCAACTTAATGCAGTGGCTTCTCCAGAAGTAGAACCTCAGAAAATTCCTGCATTCAATTAAACTCTTCTGAATATTGATGTAACACAAAAAATCTTGAAGCATGGAGACTGCATATTCTACAGTTCTCCAGAGACCAGGTAATTAGCACCCAC
TGCAGATGTAAGTGTTATTTTGGACGATGATTCAGATCAGATATTCTCTAAAGAGATGTTTCTTAATTGCAATTGCAAGTGTTATTTTGGACGATGATTCAGATCAGATATTCTCTAAAGAGATGTTTCTTAATTGCAATTGCAATTGCAATTGAATTAGGGTCACAGAATGTTGATTTTGCATATTGGCAGATACTTGT
TGAAGTTTGGATCCTCATTACATTGATTAAATAAAGAAAATCAGCAATGCGTGCCATCTTGTTTAAATTGACAATTTTTTTATCATCTTCTTAATGTTGGTGCTAGGCATGGTGTTGCTTTTAAGGCCATATTAATTAGAATTGTCCATTTCATGTTGTTCG
>TRINITY_DN38709_c1_g1_i1 from sample A8 / Example unspliced isoform:GCCAAATGAGGACCATCTCCGAAgtaagcccagggtgactctttacatttattcttttgtattgctaatattttgattttctcccgaagtttgtgttggagcattcaataggttcttatgtttgactgtggcttatgtgtttatataaattcagCTATTCGATCTTTATCTGCCTCTGGTCGGAGTGGGCACGCTGTTAA
TCTGGAAACTAGGGCTATTATGCTTTCCTTGGAAGAAG