sp|O48686|SNL3_ARATH ----> Paired amphipathic helix protein Sin3-like 3
Intron 1 GTTTTCTGTT ... GCCATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.82 | 88 | 43 | 6 |
| A2 | 22.83 | 71 | 21 | 12 |
| A3 | 25 | 96 | 32 | 9 |
| A4 | 28.57 | 45 | 18 | 6 |
| A5 | 35 | 39 | 21 | 4 |
| A6 | 18.75 | 13 | 3 | 2 |
| A7 | 13.56 | 51 | 8 | 7 |
| A8 | 17.24 | 24 | 5 | 3 |
| A9 | 22.86 | 27 | 8 | 2 |
| A10 | 15.91 | 37 | 7 | 4 |
>TRINITY_DN108407_c3_g1_i5 from sample A4 / Example spliced isoformGTTACATCGAGTAGAAAAGTCTATATTGCTGGAAAGGTGCTCGTTCACTATTCGTATTTGGAGTCTCGGATAATTAGAAGAGGTGGTGTTATTTTTCTGCTGCTGCTGGGAAGTTGTTGTTATGAGTCGAGGTTATTGACCACTGATCGAAACTACATACTGCTGGCTCTGCACTCTATTCCCCTCAATCTGCTGCGCTT
TCGCAATTGCATTTCACGAAATTCGAGCTTCCTTTCGATCGAGGCCATTGAAGGTACAGCAGTAGCGACTAATTTGGAAAATGAAGAGAGGACGGGAGGAGCGGTTTATGGGGCCGCTTGGAAAACGGCGAGGAGAATCCTCGGGATTGCATCAACCTTCTGAAGGATCACAGAGGCTATCGACAGATGATGCTTTGGCA
TATCTCAAGTCAGTCAAAGACATATTCAAGGACAATAGGGACAAATATGATGAGTTTCTTGAGATCATGAAAGCTTTTAAGGCCCAAAGAGTTGATACAGCTGGTGTTATAGCTCGGGTGAAAGATTTATTTAAGGGCCATCATACTCTTATTTTGGGTTTTAATACCTTTCTGCCAGAAGGGTATGAAATTACAGTTCC
TCCCGAGGAACTCCCAACAAGGAAGCCAGTTGAGTTTAACCAAGCAATCAATTACGTTAACAAGATCAAGAGACGGTTTCAAAAGGATGAACAAGTATACAAGACCTTTTTGGATATACTGAATATGTATCGGAAAGGGAACAAATCAATCGATGAAGTATACCGAGAGGTGGAAAGACTGTTTTATGCTCATCAAGATT
TACTAGAGGAATTTACACGTTTTCTACCAGATTGCACTGAACCAACCCCCATTCCCAATGTGCCAGCTTCTGCAATACCATCTTCTGGACACATCTCGGGAGTAACTTCCATTCGGTATTCACACAAAGAAAAGGTGGTCAAGAAAGAAAAACCAGTAACTTCACAAAATAATTTCTGTCAAAGCACAATTGTTAAAGAT
GAAAGAACATCCATGGAGGCAGAGAATGAACACTGGAAGAAGGTTGAGAAAGAAAAAGATCAAATAGAAGATTGGGAACAAAAGGAGAAAGACAGGGGTGAAAAAAGATCATCACATAGTAGAGAGAGAGAATTGGATGTCATGTATGCTCATCCTCATAAGAGGAAATCTACTAGAAAGTCTGATGAATCCATTCCGAA
GCAGATTCAGACAGGGCAACTTGGAGGATGTGGTGGAAAACAGTCCTTGCAAAACACGGTCGTAGAGGACAGTAATAGTTTAAGGAATTTATATTCACAGGAATGGGGATTTTTTGAGAAAGTAAAAACAAAGTTGAGACATAGTACATATCAAGAGTTCTTGAAATGCATCGATTTACACACCCACTCCATAATCACTC
GAGAACAATTGCAAATACTGGTGGTTGACATTCTTGAAAAATATCCAGATCTCATGGATGAATTCAATGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAAT
GAGAGAGTCAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAAAAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATTATAC
AAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGTCTGTGACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTG
TAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATGGAAGATCACTTGACAGCTATAAATTTACGATGCATTGAGCGCATTTATGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAA
GATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAACTACCATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGGACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTAT
TGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCTGCCATATATGAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTATGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTG
TGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAATTTAGGAGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAAGCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCT
TTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGGAAACTCAGGGACTGGCTCAAAGATTTCAGGGTTTGGCTGTGGACCTGCTGATTGTGCAATTCAGTCAACAGGAAAGGACTTACCACTAGCACAGGAAAGTGAGAGGGCATTGCCATCATTGGAAAGGGAATGTGGGCC
TACAGATTGTAAATCAGATGCCTTTAATCAAAGGTGTAATAATCATGAAGTAGTGCGGGGTAGATGGAAAGTTGAAATGGAAGAAGGTGAATTGTCCCCTACTCTGTCTCCACCTGCTATGGTGGAGGATGAAGAAAATGTGCATTGTTATAGTGCTGGTGACCTTGTCTCTGGTAAGAATGCTATCCTGCAAGGGAATG
ACAAGATTGCAAGCAGAACTTATACAAGTAGACAGGGAAAGAATGAAGAGTTTAACTGTGGAGTGGTAGAGAATGATGCTGAAGATGGAGAAGAGAGTGCACCTAAATCAGTTGATGATAGTGAGAATGCTTCTGATGGCGGTGAAGATATTTCAGGAAGTGAGTTTGGAAATGGTGATGGATGCTCACATGAAGATAAT
GAAGAGGACGTTGACCATGAAGACAATGAGGGGAAAGCAGAAAGTGAAGGTGAGGTTGGAGAAATGGCTGATGCACCTGATGGTGAAGAAGGCGATTCATTTGCATTATCGGATCGTATTTTGGTCATGTCCAAGCCTCTGTCAGAGCATGTCTATTCTACTGCATCAAGCATATCAGAGAAGGGTCCTGTTTTCTATGG
CAATGATACATTTTATGTGCTTTTTAGGCTGCATCAGACTTTATATGAACGGATACTCTCTGCAAAGAAGAATGCATTAACTGCAGAGCTGAATTGGAAGAATGTAAAGGATACAGCGCCCCCTAATTTGTATGCAAAATTTATGAGTGCATTATACAGTTTGCTTGATGGATCAGCTGACAATGCCAAGTTTGAGGATG
AGTGTCGAGCAATCATTGGAACACAGTCATATATGTTATTTACATTGGATAAATTGATTTTCAAACTCGTAAAGCAGCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCAAGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTG
CATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACTAATGGAAGGGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAATTACACAAAGGAAAGGCACCAATTCTTCCTTTCAAGAAACATTCG
CAAGTACGCCAGTGGCAAGGATGTTGTTATGATGTCTAAGGCGATGAAGGGTGTTGAAATCGTGAATGGGCTTGAGCATAAAATATCATGTGACACATCTAAGGCTTCATATGTTTTGGACACAGAAGATTTCCTGTTTCGCAAGAAGCAAAGGGTATTCGTGGAGCCATCCAGAAGTTATCCTGACAAAAGGTCGCTTC
GGTTTCATAGATGGATTGAATCAATAATCTGTCTTTTTTTTTGTGCAGAAATGATCACCAAGCATTCTGGAAGAAGTTGGGGGTGATTTCCTAGCTTCAAATTGGAGGATTAAATTGCCCTATTTCAATTTCTGTTTGACTGACTTTCTCATGCAAAAAGTCTGTGTGAAGTTGCCACTCTGAAGGAGGCGGTGCAATGG
ATCAGATGCAGTTTCATGGATCACACAAGTGAGCGAAGTATTCCAAGTGACGCAACCTCTAGTTAAGTTGATATCTCCTTGAAATCTACCCAAGAGGATAGCATCGCTCCAAAATGTATTAACCAGACATGTTTATGCTGTCAACTCTATAGTCATTTTGTGGGAGACGTTCATGAACTCGAAAAAATTGTGGTTTATTC
GTTATTTAATTTGAAAAATAAACCATTTTTCTTTTGCTTTCCTGGTTAGAAATTTGTTTTTCCTTGGGAAATCGTGTCTTCGGTTGATATAGATATTGCTTGTTAGTTCTCAAAGGTTGTGTACGCAATGAATAATTTTTTGGGG
>TRINITY_DN108407_c3_g1_i14 from sample A4 / Example unspliced isoform:GTTACATCGAGTAGAAAAGTCTATATTGCTGGAAAGGTGCTCGTTCACTATTCGTATTTGGAGTCTCGGATAATTAGAAGAGGTGGTGTTATTTTTCTGCTGCTGCTGGGAAGTTGTTGTTATGAGTCGAGGTTATTGACCACTGATCGAAACTACATACTGCTGGCTCTGCACTCTATTCCCCTCAATCTGCTGCGCTT
TCGCAATTGCATTTCACGAAATTCGAGCTTCCTTTCGATCGAGGCCATTGAAGGTACAGCAGTAGCGACTAATTTGGAAAATGAAGAGAGGACGGGAGGAGCGGTTTATGGGGCCGCTTGGAAAACGGCGAGGAGAATCCTCGGGATTGCATCAACCTTCTGAAGGATCACAGAGGCTATCGACAGATGATGCTTTGGCA
TATCTCAAGTCAGTCAAAGACATATTCAAGGACAATAGGGACAAATATGATGAGTTTCTTGAGATCATGAAAGCTTTTAAGGCCCAAAGAGTTGATACAGCTGGTGTTATAGCTCGGGTGAAAGATTTATTTAAGGGCCATCATACTCTTATTTTGGGTTTTAATACCTTTCTGCCAGAAGGGTATGAAATTACAGTTCC
TCCCGAGGAACTCCCAACAAGGAAGCCAGTTGAGTTTAACCAAGCAATCAATTACGTTAACAAGATCAAGAGACGGTTTCAAAAGGATGAACAAGTATACAAGACCTTTTTGGATATACTGAATATGTATCGGAAAGGGAACAAATCAATCGATGAAGTATACCGAGAGGTGGAAAGACTGTTTTATGCTCATCAAGATT
TACTAGAGGAATTTACACGTTTTCTACCAGATTGCACTGAACCAACCCCCATTCCCAATGTGCCAGCTTCTGCAATACCATCTTCTGGACACATCTCGGGAGTAACTTCCATTCGGTATTCACACAAAGAAAAGGTGGTCAAGAAAGAAAAACCAGTAACTTCACAAAATAATTTCTGTCAAAGCACAATTGTTAAAGAT
GAAAGAACATCCATGGAGGCAGAGAATGAACACTGGAAGAAGGTTGAGAAAGAAAAAGATCAAATAGAAGATTGGGAACAAAAGGAGAAAGACAGGGGTGAAAAAAGATCATCACATAGTAGAGAGAGAGAATTGGATGTCATGTATGCTCATCCTCATAAGAGGAAATCTACTAGAAAGTCTGATGAATCCATTCCGAA
GCAGATTCAGACAGGGCAACTTGGAGGATGTGGTGGAAAACAGTCCTTGCAAAACACGGTCGTAGAGGACAGTAATAGTTTAAGGAATTTATATTCACAGGAATGGGGATTTTTTGAGAAAGTAAAAACAAAGTTGAGACATAGTACATATCAAGAGTTCTTGAAATGCATCGATTTACACACCCACTCCATAATCACTC
GAGAACAATTGCAAATACTGGTGGTTGACATTCTTGAAAAATATCCAGATCTCATGGATGAATTCAATGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAAT
GAGAGAGTCAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAAAAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATTATAC
AAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGTCTGTGACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTG
TAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATGGAAGATCACTTGACAGgttttctgtttataactcttagatggtataattgtattacaaaactagaggaattactctagtggcttatttcaattgttggccattgcagCTATAAATTTACGATGCATTGAGCGCATTTA
TGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAAGATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAACTACCATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGG
ACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTATTGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCTGCCATATATGAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTA
TGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTGTGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAATTTAGGAGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAA
GCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCTTTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGGAAACT
Intron 2 GTGCAGTTGG ... TTGGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.31 | 57 | 0 | 8 |
| A2 | 11.11 | 32 | 0 | 4 |
| A3 | 19.57 | 74 | 3 | 18 |
| A4 | 17.81 | 60 | 0 | 13 |
| A5 | 20 | 28 | 0 | 7 |
| A6 | 14.07 | 116 | 0 | 19 |
| A7 | 14.08 | 122 | 0 | 20 |
| A8 | 18.25 | 103 | 0 | 23 |
| A9 | 15.75 | 107 | 0 | 20 |
| A10 | 16.09 | 73 | 0 | 14 |
>TRINITY_DN108407_c3_g1_i5 from sample A4 / Example spliced isoformGTTACATCGAGTAGAAAAGTCTATATTGCTGGAAAGGTGCTCGTTCACTATTCGTATTTGGAGTCTCGGATAATTAGAAGAGGTGGTGTTATTTTTCTGCTGCTGCTGGGAAGTTGTTGTTATGAGTCGAGGTTATTGACCACTGATCGAAACTACATACTGCTGGCTCTGCACTCTATTCCCCTCAATCTGCTGCGCTT
TCGCAATTGCATTTCACGAAATTCGAGCTTCCTTTCGATCGAGGCCATTGAAGGTACAGCAGTAGCGACTAATTTGGAAAATGAAGAGAGGACGGGAGGAGCGGTTTATGGGGCCGCTTGGAAAACGGCGAGGAGAATCCTCGGGATTGCATCAACCTTCTGAAGGATCACAGAGGCTATCGACAGATGATGCTTTGGCA
TATCTCAAGTCAGTCAAAGACATATTCAAGGACAATAGGGACAAATATGATGAGTTTCTTGAGATCATGAAAGCTTTTAAGGCCCAAAGAGTTGATACAGCTGGTGTTATAGCTCGGGTGAAAGATTTATTTAAGGGCCATCATACTCTTATTTTGGGTTTTAATACCTTTCTGCCAGAAGGGTATGAAATTACAGTTCC
TCCCGAGGAACTCCCAACAAGGAAGCCAGTTGAGTTTAACCAAGCAATCAATTACGTTAACAAGATCAAGAGACGGTTTCAAAAGGATGAACAAGTATACAAGACCTTTTTGGATATACTGAATATGTATCGGAAAGGGAACAAATCAATCGATGAAGTATACCGAGAGGTGGAAAGACTGTTTTATGCTCATCAAGATT
TACTAGAGGAATTTACACGTTTTCTACCAGATTGCACTGAACCAACCCCCATTCCCAATGTGCCAGCTTCTGCAATACCATCTTCTGGACACATCTCGGGAGTAACTTCCATTCGGTATTCACACAAAGAAAAGGTGGTCAAGAAAGAAAAACCAGTAACTTCACAAAATAATTTCTGTCAAAGCACAATTGTTAAAGAT
GAAAGAACATCCATGGAGGCAGAGAATGAACACTGGAAGAAGGTTGAGAAAGAAAAAGATCAAATAGAAGATTGGGAACAAAAGGAGAAAGACAGGGGTGAAAAAAGATCATCACATAGTAGAGAGAGAGAATTGGATGTCATGTATGCTCATCCTCATAAGAGGAAATCTACTAGAAAGTCTGATGAATCCATTCCGAA
GCAGATTCAGACAGGGCAACTTGGAGGATGTGGTGGAAAACAGTCCTTGCAAAACACGGTCGTAGAGGACAGTAATAGTTTAAGGAATTTATATTCACAGGAATGGGGATTTTTTGAGAAAGTAAAAACAAAGTTGAGACATAGTACATATCAAGAGTTCTTGAAATGCATCGATTTACACACCCACTCCATAATCACTC
GAGAACAATTGCAAATACTGGTGGTTGACATTCTTGAAAAATATCCAGATCTCATGGATGAATTCAATGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAAT
GAGAGAGTCAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAAAAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATTATAC
AAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGTCTGTGACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTG
TAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATGGAAGATCACTTGACAGCTATAAATTTACGATGCATTGAGCGCATTTATGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAA
GATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAACTACCATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGGACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTAT
TGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCTGCCATATATGAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTATGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTG
TGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAATTTAGGAGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAAGCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCT
TTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGGAAACTCAGGGACTGGCTCAAAGATTTCAGGGTTTGGCTGTGGACCTGCTGATTGTGCAATTCAGTCAACAGGAAAGGACTTACCACTAGCACAGGAAAGTGAGAGGGCATTGCCATCATTGGAAAGGGAATGTGGGCC
TACAGATTGTAAATCAGATGCCTTTAATCAAAGGTGTAATAATCATGAAGTAGTGCGGGGTAGATGGAAAGTTGAAATGGAAGAAGGTGAATTGTCCCCTACTCTGTCTCCACCTGCTATGGTGGAGGATGAAGAAAATGTGCATTGTTATAGTGCTGGTGACCTTGTCTCTGGTAAGAATGCTATCCTGCAAGGGAATG
ACAAGATTGCAAGCAGAACTTATACAAGTAGACAGGGAAAGAATGAAGAGTTTAACTGTGGAGTGGTAGAGAATGATGCTGAAGATGGAGAAGAGAGTGCACCTAAATCAGTTGATGATAGTGAGAATGCTTCTGATGGCGGTGAAGATATTTCAGGAAGTGAGTTTGGAAATGGTGATGGATGCTCACATGAAGATAAT
GAAGAGGACGTTGACCATGAAGACAATGAGGGGAAAGCAGAAAGTGAAGGTGAGGTTGGAGAAATGGCTGATGCACCTGATGGTGAAGAAGGCGATTCATTTGCATTATCGGATCGTATTTTGGTCATGTCCAAGCCTCTGTCAGAGCATGTCTATTCTACTGCATCAAGCATATCAGAGAAGGGTCCTGTTTTCTATGG
CAATGATACATTTTATGTGCTTTTTAGGCTGCATCAGACTTTATATGAACGGATACTCTCTGCAAAGAAGAATGCATTAACTGCAGAGCTGAATTGGAAGAATGTAAAGGATACAGCGCCCCCTAATTTGTATGCAAAATTTATGAGTGCATTATACAGTTTGCTTGATGGATCAGCTGACAATGCCAAGTTTGAGGATG
AGTGTCGAGCAATCATTGGAACACAGTCATATATGTTATTTACATTGGATAAATTGATTTTCAAACTCGTAAAGCAGCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCAAGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTG
CATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACTAATGGAAGGGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAATTACACAAAGGAAAGGCACCAATTCTTCCTTTCAAGAAACATTCG
CAAGTACGCCAGTGGCAAGGATGTTGTTATGATGTCTAAGGCGATGAAGGGTGTTGAAATCGTGAATGGGCTTGAGCATAAAATATCATGTGACACATCTAAGGCTTCATATGTTTTGGACACAGAAGATTTCCTGTTTCGCAAGAAGCAAAGGGTATTCGTGGAGCCATCCAGAAGTTATCCTGACAAAAGGTCGCTTC
GGTTTCATAGATGGATTGAATCAATAATCTGTCTTTTTTTTTGTGCAGAAATGATCACCAAGCATTCTGGAAGAAGTTGGGGGTGATTTCCTAGCTTCAAATTGGAGGATTAAATTGCCCTATTTCAATTTCTGTTTGACTGACTTTCTCATGCAAAAAGTCTGTGTGAAGTTGCCACTCTGAAGGAGGCGGTGCAATGG
ATCAGATGCAGTTTCATGGATCACACAAGTGAGCGAAGTATTCCAAGTGACGCAACCTCTAGTTAAGTTGATATCTCCTTGAAATCTACCCAAGAGGATAGCATCGCTCCAAAATGTATTAACCAGACATGTTTATGCTGTCAACTCTATAGTCATTTTGTGGGAGACGTTCATGAACTCGAAAAAATTGTGGTTTATTC
GTTATTTAATTTGAAAAATAAACCATTTTTCTTTTGCTTTCCTGGTTAGAAATTTGTTTTTCCTTGGGAAATCGTGTCTTCGGTTGATATAGATATTGCTTGTTAGTTCTCAAAGGTTGTGTACGCAATGAATAATTTTTTGGGG
>TRINITY_DN108407_c3_g1_i6 from sample A4 / Example unspliced isoform:TGATTTTCAAACTCGTAAAGCAGgtgcagttgggaaaacatattgtttggttcgattgtttatgttaatccttgtcagcagttgaagtattgccattgctaaattaagcattttggttgcagCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCA
AGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTGCATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACTAATGGAAGGGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAA
TTACACAAAGGAAAGGCACCAATTCTTCCTTTCAAGGTGCTGTGGATCTTTCTATATTTATACAATTAAATGGTATCAAAGTCTGC
Intron 3 GTAACCTTCT ... TCCAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.79 | 24 | 6 | 3 |
| A2 | 21.74 | 27 | 13 | 2 |
| A3 | 26.32 | 28 | 8 | 12 |
| A4 | 27.54 | 25 | 12 | 7 |
| A5 | 0 | 2 | 0 | 0 |
| A6 | 18.3 | 154 | 46 | 23 |
| A7 | 20.42 | 76 | 35 | 4 |
| A8 | 18.08 | 145 | 38 | 26 |
| A9 | 22.31 | 94 | 25 | 29 |
| A10 | 18.88 | 58 | 19 | 8 |
>TRINITY_DN47862_c1_g1_i5 from sample A7 / Example spliced isoformTGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAATGAGAGAGTCAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAA
AAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATTATACAAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGTCTGTG
ACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTGTAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATGGAAGA
TCACTTGACAGCTATAAATTTACGATGCATTGAGCGCATTTATGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAAGATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAACTACC
ATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGGACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTATTGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCCGCCATATAT
GAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTATGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTGTGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAATTTAGG
AGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAAGCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCTTTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGGAAACT
CAGGGACTGGCTCAAAGATTTCAGGGTTTGGCTGTGGACCTGCTGATTGTGCAATTCAGTCAACAGGAAAGGACTTACCACTAGCACAGGAAAGTGAGAGGGCATTGCCATCATTGGAAAGGGAATGTGGGCCTACAGATTGTAAATCAGATGCCTTTAATCAAAGGTGTAATAATCATGAAGTAGTGCGGGGTAGATGG
AAAGTTGAAATGGAAGAAGGTGAATTGTCCCCTACTCTGTCTCCACCTGCTATGGTGGAGGATGAAGAAAATGTGCATTGTTATAGTGCTGGTGACCTTGTCTCTGGTAAGAATGCTATCCTGCAAGGGAATGACAAGATTGCAAGCAGAACTTATACAAGTAGACAGGGAAAGAATGAAGAGTTTAACTGTGGAGTGGT
AGAGAATGATGCTGAAGATGGAGAAGAGAGTGCACCTAAATCAGTTGATGATAGTGAGAATGCTTCTGATGGCGGTGAAGATATTTCAGGAAGTGAGTTTGGAAATGGTGATGGATGCTCACATGAAGATAATGAAGAGGACGTTGACCATGAAGACAATGAGGGGAAAGCAGAAAGTGAAGGTGAGGTTGGAGAAATGG
CTGATGCACCTGATGGTGAAGAAGGCGATTCATTTGCATTATCGGATCGTATTTTGGTCATGTCCAAGCCTCTGTCAGAGCATGTCTATTCTACTGCATCAAGCATATCAGAGAAGGGTCCTGTTTTCTATGGCAATGATACATTTTATGTGCTTTTTAGGCTGCATCAGACTTTATATGAACGGATACTCTCTGCAAAG
AAGAATGCATTAACTGCAGAGCTGAATTGGAAGAATGTAAAGGATACAGCACCCCCTAATTTGTATGCAAAATTTATGAGTGCATTATACAGTTTGCTTGATGGATCAGCTGACAATGCCAAGTTTGAGGATGAGTGTCGAGCAATCATTGGAACACAGTCATATATGTTATTTACATTGGATAAATTGATTTTCAAACT
CGTAAAGCAGCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCAAGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTGCATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACTAATGG
AAGCGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAATTACACGAAGGAAAGGCACCAATTCTTCCTTTCAAGAAACATTCGCAAGTACGCCAGTGGCAAGGATGTTGTTATGATGTCTAAGGCGATGAAGGGTGTTGAAATCGTGAAT
GGGCTTGAGCATAAAATATCATGTGACACATCTAAGGCTTCATATGTTTTGGACACAGAAGATTTCCTGTTTCGCAAGAAGCAAAGGGTATTCGTGGAGCCATCCAGAAGTTATCCTGACAAAAGGTCGCTTCGGTTTCATAGATGGATTGAATCAATAATCTGAGTCTGGAATAATAAATGTGGTGCTACTGAAGTCAT
TGGTGACAAATTATGCTCAACTCCTCCAGTCATTTTTGTGTACCTATGATTAGCCTTTAGGATACTCTCTTGTGGAACTTTTCTTCACAGATGGTTCAGGAACAGTGAAAGTGTTCTCCATTCTACCCCTTATATATTAACTTCATTTTGCAAAGCAGGAGACTGTATTGTACTGCTCAGAGGATTTACGAAGCCTAGCA
TCTTGTAATGATGTTTTTACTGAAGGAATCTGTGTATATTTCTGTATGTAACAAAGAAGCAGAACTTCAAAATTTGTCTGAAGCAGTGTTTTGAGGGTGGAATGGATCCATTTGGATCCTTTCATATGTTTTATTTCCGACATTATATATCATTTTTATTGTTTATATTATGTAATTGGAGGTAAAAAGACTTAAGTACA
ATATAATAAAGCTATAATCTGAATTTATACTACCTAAGATCCCTTGCATTATGATCAAAACTAAGAGGTAATGAATCTACATTGGAGCAGTACAGACATAACAGTACACACCAGGAATGTTTTCGTTGATGTTGTCACAAGGGCAGTAATGGATCTTGTGTGGGACTATCTTGATTATTAAGTAGAATGTGCAGAAACAA
GTGTACTATGAACAATGACTCTAACAATGGACCGTGGTCTGATTGGTTTTCTTGTTAGGCCAGGTTTGTGAGGGATTCAACACACATGATTCAGTGTGGCACCCCAAAAGTTCTCGAACATCAGAAATTTGAAACCATGATGGGAAAACTGAATTGAAGCATACTGGTTGGTTGAATAGTAAGTAAACAATGGGTAAATG
GGGGTGCTTGCCATGAGGGGACCCAAACCTTGTAAATTGTTAACACAAGTATGATTTATTTGCCAAACTGTTACTGTAAATAAATCTTCGAAAAAAACCCAAGTTTAAACACCAAGTTATATTGATAAAGCCCAACAATGGAGGTGGTTGTGATATGGGTAGAATTCCTACAGTCTTTGGGTTGCAAATGCACGGGGGTA
TCACTGTGGGTCCATGTTCAATTCTTAGTGTACTCTCATTTTGTGGGTGTGTGCACCATGTATGTATGCACCTCGCCCTGCTTCAGTTCTATGGAGAAATCCTAGTGCAACCTAATTTGGTGGGTGCATGCATCTTGTGTATGTACCTTTCCCTCCTTGAGTTCTACGTAGCTACCTAGGAATCCATTAAGCAATGTGCT
CCAGAAGTCTGATCCAAACATTTTCGTATTTTAGGAATTTCTTCATTTACATATTTTCCTGTCTATACATTTCCTTTACATTAATAGATGTTCTCTTTTTCAATCATTTTCTTTTTTAGTTATTATCTAGGGAAGCTGTCGTACAAATGCACCCAAAATGGTTAGA
>TRINITY_DN47862_c1_g1_i3 from sample A7 / Example unspliced isoform:TGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAATGAGAGAGTCAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAA
AAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATTATACAAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGTCTGTG
ACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTGTAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATGGAAGA
TCACTTGACAGCTATAAATTTACGATGCATTGAGCGCATTTATGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAAGATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAACTACC
ATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGGACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTATTGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCCGCCATATAT
GAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTATGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTGTGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAATTTAGG
AGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAAGCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCTTTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGGAAACT
CAGGGACTGGCTCAAAGATTTCAGGGTTTGGCTGTGGACCTGCTGATTGTGCAATTCAGTCAACAGGAAAGGACTTACCACTAGCACAGGAAAGTGAGAGGGCATTGCCATCATTGGAAAGGGAATGTGGGCCTACAGATTGTAAATCAGATGCCTTTAATCAAAGGTGTAATAATCATGAAGTAGTGCGGGGTAGATGG
AAAGTTGAAATGGAAGAAGGTGAATTGTCCCCTACTCTGTCTCCACCTGCTATGGTGGAGGATGAAGAAAATGTGCATTGTTATAGTGCTGGTGACCTTGTCTCTGGTAAGAATGCTATCCTGCAAGGGAATGACAAGATTGCAAGCAGAACTTATACAAGTAGACAGGGAAAGAATGAAGAGTTTAACTGTGGAGTGGT
AGAGAATGATGCTGAAGATGGAGAAGAGAGTGCACCTAAATCAGTTGATGATAGTGAGAATGCTTCTGATGGCGGTGAAGATATTTCAGGAAGTGAGTTTGGAAATGGTGATGGATGCTCACATGAAGATAATGAAGAGGACGTTGACCATGAAGACAATGAGGGGAAAGCAGAAAGTGAAGGTGAGGTTGGAGAAATGG
CTGATGCACCTGATGGTGAAGAAGGCGATTCATTTGCATTATCGGATCGTATTTTGGTCATGTCCAAGCCTCTGTCAGAGCATGTCTATTCTACTGCATCAAGCATATCAGAGAAGGGTCCTGTTTTCTATGGCAATGATACATTTTATGTGCTTTTTAGGCTGCATCAGACTTTATATGAACGGATACTCTCTGCAAAG
AAGAATGCATTAACTGCAGAGCTGAATTGGAAGAATGTAAAGGATACAGCACCCCCTAATTTGTATGCAAAATTTATGAGTGCATTATACAGTTTGCTTGATGGATCAGCTGACAATGCCAAGTTTGAGGATGAGTGTCGAGCAATCATTGGAACACAGTCATATATGTTATTTACATTGGATAAATTGATTTTCAAACT
CGTAAAGCAGCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCAAGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTGCATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACTAATGG
AAGCGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAATTACACGAAGGAAAGGCACCAATTCTTCCTTTCAAGAAACATTCGCAAGTACGCCAGTGGCAAGGATGTTGTTATGATGTCTAAGGCGATGAAGGGTGTTGAAATCGTGAAT
GGGCTTGAGCATAAAATATCATGTGACACATCTAAGGCTTCATATGTTTTGGACACAGAAGATTTCCTGTTTCGCAAGAAGCAAAGGGTATTCGTGGAGCCATCCAGAAGTTATCCTGACAAAAGGTCGCTTCGGTTTCATAGATGGATTGAATCAATAATCTGgtaaccttctagccgctctatcctttttgattatga
ctcatctgtcccttacaaatctatagaattatttgcatttaaaagacattttgacattgcatttggaccaatattgctagtggtccaatttctgttctcttagtatttattaaattggcattttgacatttgagatttaatgtggtgccatccaatggattaagaaagttttgtattgagatagaaattctgattctgat
tttgttgtgttttgttataaatgctagtttctttctgtgtacctcaatgaaggattgattgtgttcatattttgtattttcagattgcattttacattttattcatttaattgcttgttatgaacaatttcttctcagtagtgttgttttcctacttccaatgcagAGTCTGGAATAATAAATGTGGTGCTACTGAAGTC
ATTGGTGACAAATTATGCTCAACTCCTCCAGTCATTTTTGTGTACCTATGATTAGCCTTTAGGATACTCTCTTGTGGAACTTTTCTTCACAGATGGTTCAGGAACAGTGAAAGTGTTCTCCATTCTACCCCTTATATATTAACTTCATTTTGCAAAGCAGGAGACTGTATTGTACTGCTCAGAGGATTTACGAAGCCTAG
CATCTTGTAATGATGTTTTTACTGAAGGAATCTGTGTATATTTCTGTATGTAACAAAGAAGCAGAACTTCAAAATTTGTCTGAAGCAGTGTTTTGAGGGTGGAATGGATCCATTTGGATCCTTTCATATGTTTTATTTCCGACATTATATATCATTTTTATTGTTTATATTATGTAATTGGAGGTAAAAAGACTTAAGTA
CAATATAATAAAGCTATAATCTGAATTTATACTACCTAAGATCCCTTGCATTATGATCAAAACTAAGAGGTAATGAATCTACATTGGAGCAGTACAGACATAACAGTACACACCAGGAATGTTTTCGTTGATGTTGTCACAAGGGCAGTAATGGATCTTGTGTGGGACTATCTTGATTATTAAGTAGAATGTGCAGAAAC
AAGTGTACTATGAACAATGACTCTAACAATGGACCGTGGTCTGATTGGTTTTCTTGTTAGGCCAGGTTTGTGAGGGATTCAACACACATGATTCAGTGTGGCACCCCAAAAGTTCTCGAACATCAGAAATTTGAAACCATGATGGGAAAACTGAATTGAAGCATACTGGTTGGTTGAATAGTAAGTAAACAATGGGTAAA
TGGGGGTGCTTGCCATGAGGGGACCCAAACCTTGTAAATTGTTAACACAAGTATGATTTATTTGCCAAACTGTTACTGTAAATAAATCTTCGAAAAAAACCCAAGTTTAAACACCAAGTTATATTGATAAAGCCCAACAATGGAGGTGGTTGTGATATGGGTAGAATTCCTACAGTCTTTGGGTTGCAAATGCACGGGGG
TATCACTGTGGGTCCATGTTCAATTCTTAGTGTACTCTCATTTTGTGGGTGTGTGCACCATGTATGTATGCACCTCGCCCTGCTTCAGTTCTATGGAGAAATCCTAGTGCAACCTAATTTGGTGGGTGCATGCATCTTGTGTATGTACCTTTCCCTCCTTGAGTTCTACGTAGCTACCTAGGAATCCATTAAGCAATGTG
CTCCAGAAGTCTGATCCAAACATTTTCGTATTTTAGGAATTTCTTCATTTACATATTTTCCTGTCTATACATTTCCTTTACATTAATAGATGTTCTCTTTTTCAATCATTTTCTTTTTTAGTTATTATCTAGGGAAGCTGTCGTACAAATGCACCCAAAATGGTTAGA
Intron 4 GTAAGAAACC ... TATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.45 | 57 | 15 | 18 |
| A2 | 20 | 48 | 6 | 18 |
| A3 | 26.42 | 39 | 15 | 13 |
| A4 | 21.88 | 25 | 6 | 8 |
| A5 | 24.14 | 11 | 1 | 6 |
| A6 | 11.11 | 16 | 0 | 4 |
| A7 | 18.18 | 27 | 5 | 7 |
| A8 | 11.11 | 24 | 3 | 3 |
| A9 | 16.95 | 49 | 12 | 8 |
| A10 | 21.52 | 31 | 7 | 10 |
>TRINITY_DN108407_c3_g1_i5 from sample A4 / Example spliced isoformGTTACATCGAGTAGAAAAGTCTATATTGCTGGAAAGGTGCTCGTTCACTATTCGTATTTGGAGTCTCGGATAATTAGAAGAGGTGGTGTTATTTTTCTGCTGCTGCTGGGAAGTTGTTGTTATGAGTCGAGGTTATTGACCACTGATCGAAACTACATACTGCTGGCTCTGCACTCTATTCCCCTCAATCTGCTGCGCTT
TCGCAATTGCATTTCACGAAATTCGAGCTTCCTTTCGATCGAGGCCATTGAAGGTACAGCAGTAGCGACTAATTTGGAAAATGAAGAGAGGACGGGAGGAGCGGTTTATGGGGCCGCTTGGAAAACGGCGAGGAGAATCCTCGGGATTGCATCAACCTTCTGAAGGATCACAGAGGCTATCGACAGATGATGCTTTGGCA
TATCTCAAGTCAGTCAAAGACATATTCAAGGACAATAGGGACAAATATGATGAGTTTCTTGAGATCATGAAAGCTTTTAAGGCCCAAAGAGTTGATACAGCTGGTGTTATAGCTCGGGTGAAAGATTTATTTAAGGGCCATCATACTCTTATTTTGGGTTTTAATACCTTTCTGCCAGAAGGGTATGAAATTACAGTTCC
TCCCGAGGAACTCCCAACAAGGAAGCCAGTTGAGTTTAACCAAGCAATCAATTACGTTAACAAGATCAAGAGACGGTTTCAAAAGGATGAACAAGTATACAAGACCTTTTTGGATATACTGAATATGTATCGGAAAGGGAACAAATCAATCGATGAAGTATACCGAGAGGTGGAAAGACTGTTTTATGCTCATCAAGATT
TACTAGAGGAATTTACACGTTTTCTACCAGATTGCACTGAACCAACCCCCATTCCCAATGTGCCAGCTTCTGCAATACCATCTTCTGGACACATCTCGGGAGTAACTTCCATTCGGTATTCACACAAAGAAAAGGTGGTCAAGAAAGAAAAACCAGTAACTTCACAAAATAATTTCTGTCAAAGCACAATTGTTAAAGAT
GAAAGAACATCCATGGAGGCAGAGAATGAACACTGGAAGAAGGTTGAGAAAGAAAAAGATCAAATAGAAGATTGGGAACAAAAGGAGAAAGACAGGGGTGAAAAAAGATCATCACATAGTAGAGAGAGAGAATTGGATGTCATGTATGCTCATCCTCATAAGAGGAAATCTACTAGAAAGTCTGATGAATCCATTCCGAA
GCAGATTCAGACAGGGCAACTTGGAGGATGTGGTGGAAAACAGTCCTTGCAAAACACGGTCGTAGAGGACAGTAATAGTTTAAGGAATTTATATTCACAGGAATGGGGATTTTTTGAGAAAGTAAAAACAAAGTTGAGACATAGTACATATCAAGAGTTCTTGAAATGCATCGATTTACACACCCACTCCATAATCACTC
GAGAACAATTGCAAATACTGGTGGTTGACATTCTTGAAAAATATCCAGATCTCATGGATGAATTCAATGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAAT
GAGAGAGTCAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAAAAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATTATAC
AAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGTCTGTGACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTG
TAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATGGAAGATCACTTGACAGCTATAAATTTACGATGCATTGAGCGCATTTATGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAA
GATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAACTACCATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGGACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTAT
TGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCTGCCATATATGAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTATGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTG
TGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAATTTAGGAGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAAGCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCT
TTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGGAAACTCAGGGACTGGCTCAAAGATTTCAGGGTTTGGCTGTGGACCTGCTGATTGTGCAATTCAGTCAACAGGAAAGGACTTACCACTAGCACAGGAAAGTGAGAGGGCATTGCCATCATTGGAAAGGGAATGTGGGCC
TACAGATTGTAAATCAGATGCCTTTAATCAAAGGTGTAATAATCATGAAGTAGTGCGGGGTAGATGGAAAGTTGAAATGGAAGAAGGTGAATTGTCCCCTACTCTGTCTCCACCTGCTATGGTGGAGGATGAAGAAAATGTGCATTGTTATAGTGCTGGTGACCTTGTCTCTGGTAAGAATGCTATCCTGCAAGGGAATG
ACAAGATTGCAAGCAGAACTTATACAAGTAGACAGGGAAAGAATGAAGAGTTTAACTGTGGAGTGGTAGAGAATGATGCTGAAGATGGAGAAGAGAGTGCACCTAAATCAGTTGATGATAGTGAGAATGCTTCTGATGGCGGTGAAGATATTTCAGGAAGTGAGTTTGGAAATGGTGATGGATGCTCACATGAAGATAAT
GAAGAGGACGTTGACCATGAAGACAATGAGGGGAAAGCAGAAAGTGAAGGTGAGGTTGGAGAAATGGCTGATGCACCTGATGGTGAAGAAGGCGATTCATTTGCATTATCGGATCGTATTTTGGTCATGTCCAAGCCTCTGTCAGAGCATGTCTATTCTACTGCATCAAGCATATCAGAGAAGGGTCCTGTTTTCTATGG
CAATGATACATTTTATGTGCTTTTTAGGCTGCATCAGACTTTATATGAACGGATACTCTCTGCAAAGAAGAATGCATTAACTGCAGAGCTGAATTGGAAGAATGTAAAGGATACAGCGCCCCCTAATTTGTATGCAAAATTTATGAGTGCATTATACAGTTTGCTTGATGGATCAGCTGACAATGCCAAGTTTGAGGATG
AGTGTCGAGCAATCATTGGAACACAGTCATATATGTTATTTACATTGGATAAATTGATTTTCAAACTCGTAAAGCAGCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCAAGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTG
CATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACTAATGGAAGGGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAATTACACAAAGGAAAGGCACCAATTCTTCCTTTCAAGAAACATTCG
CAAGTACGCCAGTGGCAAGGATGTTGTTATGATGTCTAAGGCGATGAAGGGTGTTGAAATCGTGAATGGGCTTGAGCATAAAATATCATGTGACACATCTAAGGCTTCATATGTTTTGGACACAGAAGATTTCCTGTTTCGCAAGAAGCAAAGGGTATTCGTGGAGCCATCCAGAAGTTATCCTGACAAAAGGTCGCTTC
GGTTTCATAGATGGATTGAATCAATAATCTGTCTTTTTTTTTGTGCAGAAATGATCACCAAGCATTCTGGAAGAAGTTGGGGGTGATTTCCTAGCTTCAAATTGGAGGATTAAATTGCCCTATTTCAATTTCTGTTTGACTGACTTTCTCATGCAAAAAGTCTGTGTGAAGTTGCCACTCTGAAGGAGGCGGTGCAATGG
ATCAGATGCAGTTTCATGGATCACACAAGTGAGCGAAGTATTCCAAGTGACGCAACCTCTAGTTAAGTTGATATCTCCTTGAAATCTACCCAAGAGGATAGCATCGCTCCAAAATGTATTAACCAGACATGTTTATGCTGTCAACTCTATAGTCATTTTGTGGGAGACGTTCATGAACTCGAAAAAATTGTGGTTTATTC
GTTATTTAATTTGAAAAATAAACCATTTTTCTTTTGCTTTCCTGGTTAGAAATTTGTTTTTCCTTGGGAAATCGTGTCTTCGGTTGATATAGATATTGCTTGTTAGTTCTCAAAGGTTGTGTACGCAATGAATAATTTTTTGGGG
>TRINITY_DN108407_c3_g1_i11 from sample A4 / Example unspliced isoform:CTCGATTATAAGAATGTACTTTCAGTGTGCCCACGGGGTGTAGAATAGATGGTGAATGGGTGTATTGTTAAGGCACTCCTTGCTTAAGGTCACCGGTTCAAAACTCCGTGGGTACGAGCCTTAACAAAAAAAAGAATGTACTTTCAGTGTAGCATTTACTACTTTAAAAAAAAATTACTAAATGAAAAACCTGCATGCCT
TTTTATGTTTAGGTGGTTGACATTCTTGAAAAATATCCAGATCTCATGGATGAATTCAATGAAATTGTTTCTCGGATCGCGAACAATGTTGCAGATGTTGACTCAGGAGAGGGAGGATGTACAAAACTTGTAAAGATGGAGAATGGTAGGGATAAGGATAAGAACTATGATAGGGAGCCGGAGAAGGAAAATGAGAGAGT
CAAAGCAGAAGATCAGGAAAGATATAGGGAGAGAGACAAAGATCGGCATCACAGGGCAAAAGATATACTGAACAGCAATGCTTCTCTTCTTCCAAATAAAGAGAAATTTACAAACAAGCCAATTTCTGAGTTGGACCTGTCTAATTGTGAGCGTTGTACACCTAGTTACCGTTTGCTGCCTAAGAATgtaagaaaccaat
gatgtggtgatatttccgaagtcacagtgaaaccttttttattcctcttggaaatgtgtatcagaaacgtcatgcctaacaacatgattaaaattggttgtgaaaatctgacattaatttcaatattttgcagTATACAAAATCTGTTGCCAGTTATCGCACTGATCTTGCAACAGAGTTACTGAATGATAATTGGGTGT
CTGTGACATCTGGTAGTGAGGATTACTCCTTCAAGCATATGCGCAAGAATCAATACGAGGAAAGTCTTTTTTGTTGCGAGGATGATAGATTTGAGTTGGATATGCTGATAGAATCCACAGCAGCTACAACTAAGTCTGTAAAAGAGCTGTTGGAAAAGATGCAAAATAATATAATTAAGCGAGATTGTCGTATCCAAATG
GAAGATCACTTGACAGCTATAAATTTACGATGCATTGAGCGCATTTATGGGGATCATGGACTTGACGTACTTGATCTTTTACGGAAAGAGCCAGCTGTTGCCGTGCCAGTGATACTGACTCGTCTTCAGCAAAAGCAAGATGAATGGTCTAGGTGTCGTGTTGACATGAACAAAGTGTGGGCTGAGGTTTATGCAAAGAA
CTACCATAAATCTCTTGATCATCGGAGCTTCTATTTTAAGCAGCAGGACAGAAAAAGTTTGAGTGCCAAAGCTCTCTTACAGGAGATTAAAGATATGAACGAGAAGAAAAGTAAAGAAGATGAAATGCTTCTTGCTATTGCAGCTGGGAATAGAAGACCCTTAATTCCTCATTTGAAATATGACTATCCTGACCCTGCCA
TATATGAGGACTTGTACAAAATCATCAAATATTCTTGTGAAGAAGTATGCACAAGTACGGAGCAATCTGATAAAGTAATGAGGATCTGGACTATCTTTTTGGAGCGCATGCTTGGTGTCCCCCCTCGACCCAATTGTGTGGAGGACACAGAAGAAGGGGTGAAGGTTAGGAGCGCTCATGTAAAAAATGCTGATGCAAAT
TTAGGAGGAAATTTTGGTGGAAATGGTTCAAGCTTGGTTACAACAAAGCAAATCACTTCTGGTGGTGATATAATGGAAAATGCCACTACAGAGAAAATGATCTCTGATATGCTTAGATTGGGAAATGAGAAATCTTCTTTGCAAGGCTTGAGTACACATCGCATTGGTCAGAGTTGGCATGATGATGGTGGATCATTTGG
AAACTCAGGGACTGGCTCAAAGATTTCAGGGTTTGGCTGTGGACCTGCTGATTGTGCAATTCAGTCAACAGGAAAGGACTTACCACTAGCACAGGAAAGTGAGAGGGCATTGCCATCATTGGAAAGGGAATGTGGGCCTACAGATTGTAAATCAGATGCCTTTAATCAAAGGTGTAATAATCATGAAGTAGTGCGGGGTA
GATGGAAAGTTGAAATGGAAGAAGGTGAATTGTCCCCTACTCTGTCTCCACCTGCTATGGTGGAGGATGAAGAAAATGTGCATTGTTATAGTGCTGGTGACCTTGTCTCTGGTAAGAATGCTATCCTGCAAGGGAATGACAAGATTGCAAGCAGAACTTATACAAGTAGACAGGGAAAGAATGAAGAGTTTAACTGTGGA
GTGGTAGAGAATGATGCTGAAGATGGAGAAGAGAGTGCACCTAAATCAGTTGATGATAGTGAGAATGCTTCTGATGGCGGTGAAGATATTTCAGGAAGTGAGTTTGGAAATGGTGATGGATGCTCACATGAAGATAATGAAGAGGACGTTGACCATGAAGACAATGAGGGGAAAGCAGAAAGTGAAGGTGAGGTTGGAGA
AATGGCTGATGCACCTGATGGTGAAGAAGGCGATTCATTTGCATTATCGGATCGTATTTTGGTCATGTCCAAGCCTCTGTCAGAGCATGTCTATTCTACTGCATCAAGCATATCAGAGAAGGGTCCTGTTTTCTATGGCAATGATACATTTTATGTGCTTTTTAGGCTGCATCAGACTTTATATGAACGGATACTCTCTG
CAAAGAAGAATGCATTAACTGCAGAGCTGAATTGGAAGAATGTAAAGGATACAGCGCCCCCTAATTTGTATGCAAAATTTATGAGTGCATTATACAGTTTGCTTGATGGATCAGCTGACAATGCCAAGTTTGAGGATGAGTGTCGAGCAATCATTGGAACACAGTCATATATGTTATTTACATTGGATAAATTGATTTTC
AAACTCGTAAAGCAGCTCCAAATAATTGCATCAGATGATATGGCAAACAAGTTGTTTCAGTTAGAATTGTATGAGAGATCAAGATCACCTTCAAGGTTTATTGATTCAATTTACCATGCGAATACTTGCACGTTACTGCATGGTGAAAATATTTATCGATTTGAATTTTCATCTAATCCTTACCGCTTGACAATTCAACT
AATGGAAGGGCTCGAGAAGCTTGAAGTCATTCCTAACGCACTGGAACCTACCTTCTCAAATTATTTGTATAATGAATTTCTTGCAACAGATAATTACACAAAGGAAAGGCACCAATTCTTCCTTTCAAGAAACATTCGCAAGTACGCCAGTGGCAAGGATGTTGTTATGATGTCTAAGGCGATGAAGGGTGTTGAAATCG
TGAATGGGCTTGAGCATAAAATATCATGTGACACATCTAAGGCTTCATATGTTTTGGACACAGAAGATTTCCTGTTTCGCAAGAAGCAAAGGGTATTCGTGGAGCCATCCAGAAGTTATCCTGACAAAAGGTCGCTTCGGTTTCATAGATGGATTGAATCAATAATCTGAGTCTGGAATAATAAATGTGGTGCTACTGAA
GTCATTGGTGACAAATTATGCTCAACTCCTCCAGTCATTTTTGTGTACCTATGATTAGCCTTTAGGATACTCTCTTGTGGAACTTTTCTTCACAGATGGTTCAGGAACAGTGAAAGTGTTCTCCATTCTACCCCTTATATATTAACTTCATTTTGCAAAGCAGGAGACTGTATTGTACTGCTCAGAGGATTTACGAAGCC
TAGCATCTTGTAATGATGTTTTTACTGAAGGAATCTGTGTATATTTCTGTATGTAACAAAGAAGCAGAACTTCAAAATTTGTCTGAAGCAGTGTTTTGAGGGTGGAATGGATCCATTTGGATCCTTTCATATGTTTTATTTCCGACATTATATATCATTTTTATTGTTTATATTATGTAATTGGAGGTAAAAAGACTTAA
GTACAATATAATAAAG