NA ----> NA
Intron 1 GTAAGATAAA ... TCTCATATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.16 | 39.4 | 144 | 134 |
| A2 | 73.75 | 32 | 102 | 68 |
| A3 | 77.89 | 35.8 | 126 | 112 |
| A4 | 75.2 | 29 | 101 | 70 |
| A5 | 77.66 | 8.8 | 36 | 25 |
| A6 | 74.94 | 12.2 | 47 | 21 |
| A7 | 76.5 | 38.8 | 146 | 97 |
| A8 | 72.59 | 39 | 66 | 135 |
| A9 | 80.69 | 29.6 | 125 | 115 |
| A10 | 78.25 | 43.4 | 151 | 143 |
>TRINITY_DN106307_c0_g1_i6 from sample A5 / Example spliced isoformGTCTGCTAAAACTGGCAATGAAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAGGTGTTAATTCAGAGGTTGCTGTCTAAGGTCAGAA
CTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATTGAATGTCTCTGAAGCAGGTTTCCAGGAAAGACTG
ACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGATGGCGATCTAATCTGCCAAGCTTGAAAGGAATGCT
GTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATTAACTTTTCAAAAATTGCAG
CATTCATAGAAAGTCGAATTGAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCAGGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATC
AGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTCAGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACA
ATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCAACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAA
TGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTTTCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAA
GCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAAT
>TRINITY_DN106307_c0_g1_i9 from sample A5 / Example unspliced isoform:AGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGTCGGGCCAGATGCGAGCGA
CTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCA
TATTTTGCTGGGGTTTTGTCAGTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATA
CAAAGATACAAAGGGAGCCCATACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATT
TGGATGGCTCTGAGGAAGTAATTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTT
CGCCTTGCTTCAAGGACTGAAAAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTT
CCTGAAGAAACTAGCCAGGAAGTCTGCTAAAACTGGCAATGAAGgtaagataaacaattttcctgctgcaaatcaagaagagaagaaaatcaatgatgaggcactcatgaatccagatagttcgtcattaacagatttctcaagcaaaccttctttttcgacaaaaaatcgtaataatcatttcaatgctgaatcatcat
tatcatcatcaccatctagaagttttgggaaccgaagcaagttgattggtgtttctcatatagATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTC
AGTCAGGTGTTAATTCAGAGGTTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAAC
GAGATTGAATGTCTCTGAAGCAGGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTC
CTGGATGGCGATCTAATCTGCCAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCA
TCAATTGGAGATCACAAGATTAACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCAGGAATCTAGTGAATCTAT
GGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTCAGAGTCATGAGCAACCAA
AATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCAACAGATGAGAAGCCAAAG
AGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTTTCAGGATTTTCTGCATTA
TTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAAT
Intron 2 GTGAGTGTGG ... TCTGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 92.74 | 11 | 137 | 144 |
| A2 | 80.47 | 21 | 64 | 109 |
| A3 | 87.86 | 17 | 100 | 146 |
| A4 | 89.87 | 12 | 109 | 104 |
| A5 | 92.94 | 3 | 44 | 35 |
| A6 | 84.38 | 10 | 47 | 61 |
| A7 | 85.1 | 43 | 188 | 303 |
| A8 | 84.35 | 41 | 165 | 277 |
| A9 | 83.12 | 40 | 176 | 218 |
| A10 | 85.53 | 33 | 158 | 232 |
>TRINITY_DN38114_c0_g1_i3 from sample A10 / Example spliced isoformTGTAACATGAGAGTCCTTCCCGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCT
GGATGGCGATCTAATCTGCCAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATC
AATTGGAGATCACAAGATTAACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCAGGAATCTAGTGAATCTATGG
GATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTCAGAGTCATGAGCAACCAAAA
TGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCAACAGATGAGAAGCCAAAGAG
AGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTTTCAGGATTTTCTGCATTATT
GAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTGGAAGTAGATTCCTGTGTTCATTGTCTTTTACGGCT
CACCCCTTTGTATAGCCATTTGTTGATATATTCAATGTTGCAT
>TRINITY_DN38114_c0_g1_i5 from sample A10 / Example unspliced isoform:CTCCATCTTGGTGCTCCCCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTG
TCGGGCCAGATGCGAGCGACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGGTCACATCAATATTTTCATTGTGTT
TCTGTTCCTGCATTTTCGTTCTTCTTCTTCTTATTTTTCTATTAGCATTTCCGTTCTTCTTCTTCTTATCTATTTAGTAGCATTTTCGTCTTTCTTTGATCAAATGCGGTTAATTTTAAGCTGCAATAGTGCAAGAGTTGACAAAGCTTGCCATCCATGGCTGAATTCGTTTTATACCGTTCGTTCTTTCAATTATTGAC
AGTTTTAGCTTTTGCCCGCTCTACCGTTCATGAAATTTATTGCAAATCACAGATGAATTGCCATTAATTCAATTCCTGGCTACTTATTTCATCATTTTTTTTGAAAATATAAAGACACTTGAAGAAATTTTAGATTTGTGCCCTCAGTTCTGTTTATTTCTACCTCCTTCATGGCCCTTATGTCGGTGAAAACATATAAG
CTTCTATGTGTGGTTCTCAGTATTCAATTTGACCTTTAAGGCCTTATCGAATTCAGAATTGTTGTTTTCATTTATATTCGATCTGCAATGCGCAGCTGTTGTACTTCTGAATTGCTTGTTTTGGCTTTTGGCAACCGTTGATACGGTTCAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTT
TGCTGGGGTTTTGTCAGTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAG
ATACAAAGGGAGCCCATACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGAT
GGCTCTGAGGAAGTAATTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCT
TGCTTCAAGGACTGAAAAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGA
AGAAACTAGCCAGGAAGTCTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCA
TCATCACCATCTAGAAGTTTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCA
GGTGTTAATTCAGAGGTTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCgtgagtgtggatgaagcatgggcactagaggctgatattgagtattttggtggtgcaattattgatattgaaacgagat
tgaatgtctctgaagcagGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGA
TGGCGATCTAATCTGCCAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAAT
TGGAGATCACAAGATTAACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGGTATTTGAGGGTACATTCCATTTTGTGTATTTTCAATAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTA
TACCATGGACACGCCAGGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCA
GACTCAGGTGATATTCAGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCT
TTCTTCCCTTTCTTCAACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTT
GGACATGTCCTTAGTTTCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCT
GGAAGTAGATTCCTGTGTTCATTGTCTTTTACGGCTCACCCCTTTGTATAGCCATTTGTTGATATATTCAATGTTGCAT
Intron 3 GTAGTCTTTC ... CTTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.96 | 64 | 0 | 15 |
| A2 | 21.71 | 29 | 2 | 9.5 |
| A3 | 15.15 | 23 | 0 | 5 |
| A4 | 23.94 | 30 | 5 | 11 |
| A5 | 15.28 | 25 | 0 | 5.5 |
| A6 | 19.15 | 29 | 0 | 9 |
| A7 | 21.55 | 116 | 5 | 42 |
| A8 | 19.77 | 156 | 0.5 | 51 |
| A9 | 20.59 | 100 | 1.5 | 35 |
| A10 | 18.11 | 88 | 0 | 25 |
>TRINITY_DN43947_c0_g1_i4 from sample A7 / Example spliced isoformCCCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGTCGGGCCAGATGCGAG
CGACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGGTCACATCAATATTTTCATTGTGTTTCTGTTCCTGCATTTT
CGTTCTTCTTCTTCTTATTTTTCTATTAGCATTTCCGTTCTTCTTCTTCTTATCTATTTAGTAGCATTTTCGTCTTTCTTTGATCAAATGCGGTTAATTTTAAGCTGCAATAGTGCAAGAGTTGACAAAGCTTGCCATCCATGGCTGAATTCGTTTTATACCGTTCGTTCTTTCAATTATTGACAGTTTTAGCTTTTGCC
CGCTCTACCGTTCATGAAATTTATTGCAAATCACAGATGAATTGCCATTAATTCAATTCCTGGCTACTTATTTCATCATTTTTTTTGAAAATATAAAGACACTTGAAGAAATTTTAGATTTGTGCCCTCAGTTCTGTTTATTTCTACCTCCTTCATGGCCCTTATGTCGGTGAAAACATATAAGCTTCTATGTGTGGTTC
TCAGTATTCAATTTGACCTTTAAGGCCTTATCGAATTCAGAATTGTTGTTTTCATTTATATTCGATCTGCAATGCGCAGCTGTTGTACTTCTGAATTGCTTGTTTTGGCTTTTGGCAACCGTTGATACGGTTCAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTTTGCTGGGGTTTTGTCA
GTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAGATACAAAGGGAGCCCA
TACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGATGGCTCTGAGGAAGTAA
TTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCTTGCTTCAAGGACTGAA
AAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGAAGAAACTAGCCAGGAA
GTCTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCATCATCACCATCTAGAA
GTTTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAGGTGTTAATTCAGAGG
TTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATTGAATGTCTCTGAAGC
AGGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGATGGCGATCTAATCTGC
CAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATT
AACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGGTATTTGAGGGTACATTCCATTTTGTGTATTTTCAATAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCA
GGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTC
AGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCA
ACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTT
TCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTGGAAGTAGATTCCTGT
GTTCATTGTCTTTTACGGCTCACCCCTTTGTATAGCCATTTGTTGATATATTCAATGTTGCAAAA
>TRINITY_DN43947_c0_g1_i3 from sample A7 / Example unspliced isoform:GCAAGTAGCAAGCATGAACCCTCCAGCAATATGTAGGTGGATTTGTGCATAAAATCAGCAAAAGGAATGCTGTTGTTACAGGTTTCCAATAACAGTTGCTGTGAGAAATTGCAAATAAACCACTAAGATTAATTTCCTGGCTGTTCTCCTTTTCCTCTCAGCATTTCTAGGTTTTGAATCCTGAATGTAATTTTTTGCTT
TAATTACAGGTATTTGAGGGTACATTCCATTTTGTGTATTTTCAATAGgtagtctttctatcttctttcttgttcagagttctttacttttagttccagacgttcaatttcatacagatttaatatgttctttttccagGCAGCTGTCCA
Intron 4 GTGCCTTTGG ... TCGAATTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.56 | 65.7 | 236 | 76 |
| A2 | 79.91 | 30.7 | 111 | 31 |
| A3 | 77.92 | 40.7 | 133 | 46 |
| A4 | 81.54 | 34.7 | 138 | 30 |
| A5 | 69.13 | 25 | 49 | 21 |
| A6 | 83.26 | 25.7 | 116 | 40 |
| A7 | 80.59 | 114.7 | 432 | 131 |
| A8 | 79.26 | 115.7 | 406 | 155 |
| A9 | 80.97 | 87.7 | 341 | 109 |
| A10 | 80.9 | 90 | 349 | 110 |
>TRINITY_DN105306_c0_g1_i4 from sample A3 / Example spliced isoformCTTGCCGGCCAAGTTTCACAGGTATTTGAGGGTACATTCCATTTTGTGTATTTTCAATAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCAGGAATCTAGTGAATCTATGGG
ATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTCAGAGTCATGAGCAACCAAAAT
GTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCAACAGATGAGAAGCCAAAGAGA
GGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTTTCAGGATTTTCTGCATTATTG
AGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTGGAAGTAGATTCCTGTGTTCATTGTCTTTTACGGCTC
ACCCCTTTGTATAGCCATTTGTTGATATATTCAATGTTGC
>TRINITY_DN105306_c0_g1_i3 from sample A3 / Example unspliced isoform:TCCATCTTGGTGCTCCCCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGT
CGGGCCAGATGCGAGCGACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGGTCACATCAATATTTTCATTGTGTTT
CTGTTCCTGCATTTTCGTTCTTCTTCTTCTTATTTTTCTATTAGCATTTCCGTTCTTCTTCTTCTTATCTATTTAGTAGCATTTTCGTCTTTCTTTGATCAAATGCGGTTAATTTTAAGCTGCAATAGTGCAAGAGTTGACAAAGCTTGCCATCCATGGCTGAATTCGTTTTATACCGTTCGTTCTTTCAATTATTGACA
GTTTTAGCTTTTGCCCGCTCTACCGTTCATGAAATTTATTGCAAATCACAGATGAATTGCCATTAATTCAATTCCTGGCTACTTATTTCATCATTTTTTTTGAAAATATAAAGACACTTGAAGAAATTTTAGATTTGTGCCCTCAGTTCTGTTTATTTCTACCTCCTTCATGGCCCTTATGTCGGTGAAAACATATAAGC
TTCTATGTGTGGTTCTCAGTATTCAATTTGACCTTTAAGGCCTTATCGAATTCAGAATTGTTGTTTTCATTTATATTCGATCTGCAATGCGCAGCTGTTGTACTTCTGAATTGCTTGTTTTGGCTTTTGGCAACCGTTGATACGGTTCAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTTT
GCTGGGGTTTTGTCAGTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAGA
TACAAAGGGAGCCCATACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGATG
GCTCTGAGGAAGTAATTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCTT
GCTTCAAGGACTGAAAAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGAA
GAAACTAGCCAGGAAGTCTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCAT
CATCACCATCTAGAAGTTTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAG
GTGTTAATTCAGAGGTTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATT
GAATGTCTCTGAAGCAGGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGAT
GGCGATCTAATCTGCCAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGgtgcctttggctttgtcaatacaagtattatctctaaaagggacagtgaggataagtgttaagccacctccttccgaccgtatatggtttagttttacatcaacaccaaacatcgagtggggatttgaaccatcaatt
ggagatcacaagattaacttttcaaaaattgcagcattcatagaaagtcgaattgagGTATTTGAGGGTACATTCCATTTTGTGTATTTTCAATAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTAT
ACCATGGACACGCCAGGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAG
ACTCAGGTGATATTCAGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTT
TCTTCCCTTTCTTCAACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTG
GACATGTCCTTAGTTTCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTG
GAAGTAGATTCCTGTGTTCATTGTCTTTTACGGCTCACCCCTTTGTATAGCCATTTGTTGATATATTCAATGTTGC
Intron 5 GTCACATCAA ... TACGGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.38 | 52 | 88 | 100 |
| A2 | 58.97 | 48 | 78 | 60 |
| A3 | 62.12 | 68 | 141 | 82 |
| A4 | 63.45 | 53 | 110 | 74 |
| A5 | 70 | 18 | 57 | 27 |
| A6 | 62.5 | 9 | 20 | 10 |
| A7 | 63.05 | 46 | 88 | 69 |
| A8 | 76 | 6 | 27 | 11 |
| A9 | 61.47 | 42 | 89 | 45 |
| A10 | 61.73 | 53 | 106 | 65 |
>TRINITY_DN105306_c0_g1_i2 from sample A3 / Example spliced isoformTCCATCTTGGTGCTCCCCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGT
CGGGCCAGATGCGAGCGACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGTAGAGTCCTCTGCCTCTGTCAGAATG
CTTTCGTTAGTGGTGGCATATTTTGCTGGGGTTTTGTCAGTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAAT
ATGCTTGTCAGAGCCATACAAAGATACAAAGGGAGCCCATACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATA
TGCTTATTTTGACAGATTTGGATGGCTCTGAGGAAGTAATTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAA
GCATGGTGCAAAGCACTTCGCCTTGCTTCAAGGACTGAAAAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTC
CTCAAAGGTACGCCTTTTCCTGAAGAAACTAGCCAGGAAGTCTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATT
TCAATGCTGAATCATCATTATCATCATCACCATCTAGAAGTTTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGT
TCAGAAGCTACAGCCTTCAGTCAGGTGTTAATTCAGAGGTTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGC
AATTATTGATATTGAAACGAGATTGAATGTCTCTGAAGCAGGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCA
CAAAGAGTTCAAACATTCCTGGATGGCGATCTAATCTGCCAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATC
GAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATTAACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCA
GGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTC
AGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCA
ACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTT
TCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTGGAAGTAGATTCCTGT
GTTCATTGTCTTTTACGGCTCACCCCTTTGTATAGCCATTTGTTGATATATTCAATGTTGC
>TRINITY_DN105306_c0_g1_i8 from sample A3 / Example unspliced isoform:TCCATCTTGGTGCTCCCCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGT
CGGGCCAGATGCGAGCGACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGgtcacatcaatattttcattgtgttt
ctgttcctgcattttcgttcttcttcttcttatttttctattagcatttccgttcttcttcttcttatctatttagtagcattttcgtctttctttgatcaaatgcggttaattttaagctgcaatagtgcaagagttgacaaagcttgccatccatggctgaattcgttttataccgttcgttctttcaattattgaca
gttttagcttttgcccgctctaccgttcatgaaatttattgcaaatcacagatgaattgccattaattcaattcctggctacttatttcatcattttttttgaaaatataaagacacttgaagaaattttagatttgtgccctcagttctgtttatttctacctccttcatggcccttatgtcggtgaaaacatataagc
ttctatgtgtggttctcagtattcaatttgacctttaaggccttatcgaattcagaattgttgttttcatttatattcgatctgcaatgcgcagctgttgtacttctgaattgcttgttttggcttttggcaaccgttgatacggttcagTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTTT
GCTGGGGTTTTGTCAGTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAGA
TACAAAGGGAGCCCATACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGATG
GCTCTGAGGAAGTAATTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCTT
GCTTCAAGGACTGAAAAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGAA
GAAACTAGCCAGGAAGTCTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCAT
CATCACCATCTAGAAGTTTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAG
GTGTTAATTCAGAGGTTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATT
GAATGTCTCTGAAGCAGGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGGTGAATATCTACAAACACTGATTTGTGCTA
CATTTTCAAGGTCTCAAAGTTGAATTACTGCTCGTTTTTTCATTCTGTTTATGGAAATTATATTATGTTTGCAAACATTCCTAAAATTATATCAAAAGTCTCCTCTTTACTCAGCTGCTTCATTGTGATTGCTTATAGTGTTCAAGCAAATGTATTGAATTTGATGATAGTTTCCCTGTCAAGCTTCCAGAGTCAGTC
Intron 6 GTAAGAAAAT ... CTTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.39 | 38.8 | 53 | 13 |
| A2 | 59.74 | 17.3 | 24 | 10 |
| A3 | 60.32 | 32.2 | 44 | 13 |
| A4 | 62.33 | 16.8 | 25 | 8 |
| A5 | 67.95 | 8.3 | 16 | 3 |
| A6 | 59.27 | 27.8 | 36 | 8 |
| A7 | 58.7 | 79.7 | 99 | 8 |
| A8 | 54.28 | 105.5 | 113 | 22 |
| A9 | 56.68 | 68.8 | 78 | 3 |
| A10 | 55.62 | 66.7 | 73 | 7 |
>TRINITY_DN95592_c0_g1_i3 from sample A4 / Example spliced isoformCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGTCGGGCCAGATGCGAGCG
ACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGGTCACATCAATATTTTCATTGTGTTTCTGTTCCTGCATTTTCG
TTCTTCTTCTTCTTATTTTTCTATTAGCATTTCCGTTCTTCTTCTTCTTATCTATTTAGTAGCATTTTCGTCTTTCTTTGATCAAATGCGGTTAATTTTAAGCTGCAATAGTGCAAGAGTTGACAAAGCTTGCCATCCATGGCTGAATTCGTTTTATACCGTTCGTTCTTTCAATTATTGACAGTTTTAGCTTTTGCCCG
CTCTACCGTTCATGAAATTTATTGCAAATCACAGATGAATTGCCATTAATTCAATTCCTGGCTACTTATTTCATCATTTTTTTTGAAAATATAAAGACACTTGAAGAAATTTTAGATTTGTGCCCTCAGTTCTGTTTATTTCTACCTCCTTCATGGCCCTTATGTCGGTGAAAACATATAAGCTTCTATGTGTGGTTCTC
AGTATTCAATTTGACCTTTAAGGCCTTATCGAATTCAGAATTGTTGTTTTCATTTATATTCGATCTGCAATGCGCAGCTGTTGTACTTCTGAATTGCTTGTTTTGGCTTTTGGCAACCGTTGATACGGTTCAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTTTGCTGGGGTTTTGTCAGT
TTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAGATACAAAGGGAGCCCATA
CTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGATGGCTCTGAGGAAGTAATT
GAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCTTGCTTCAAGGACTGAAAA
AGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGAAGAAACTAGCCAGGAAGT
CTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCATCATCACCATCTAGAAGT
TTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAGGTGTTAATTCAGAGGTT
GCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATTGAATGTCTCTGAAGCAG
GTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGATGGCGATCTAATCTGCCA
AGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATTAA
CTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGAGAAATCTTTTAATTTAGTTGGTTGTATGACCCTCATCCTCCTAGCAAGTGGCTAATATCATGGACGAGGCAGTGACAAATTCAAAGTCAGGCAATTAGGCACACTCCTAATATTAGAAAACTTGCACACCCTGCAATTAATTCCATGAAATGAATTCTA
CAATTAGAAATATCAAAGAAACTCTTTATATCAAATATTTAACTTAACTATGAGTTGGCATTGTTTAATTGTTGTTGGTTGCTTGACAAGTAATCACAACCATTGGTTTGGTTCTGAGATTCAAGCTGATCATTGGTTTGTTTGTTGTAGTTGCGCTCTTTATATCAAATATTTAACTTAACTATGAGTTGGCATTGGTT
AATTCTTGTTGGTCACTTGACAAGTAATCATTGGTTTGGTTCTGAG
>TRINITY_DN95592_c0_g1_i5 from sample A4 / Example unspliced isoform:CAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGTCGGGCCAGATGCGAGCG
ACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGGTCACATCAATATTTTCATTGTGTTTCTGTTCCTGCATTTTCG
TTCTTCTTCTTCTTATTTTTCTATTAGCATTTCCGTTCTTCTTCTTCTTATCTATTTAGTAGCATTTTCGTCTTTCTTTGATCAAATGCGGTTAATTTTAAGCTGCAATAGTGCAAGAGTTGACAAAGCTTGCCATCCATGGCTGAATTCGTTTTATACCGTTCGTTCTTTCAATTATTGACAGTTTTAGCTTTTGCCCG
CTCTACCGTTCATGAAATTTATTGCAAATCACAGATGAATTGCCATTAATTCAATTCCTGGCTACTTATTTCATCATTTTTTTTGAAAATATAAAGACACTTGAAGAAATTTTAGATTTGTGCCCTCAGTTCTGTTTATTTCTACCTCCTTCATGGCCCTTATGTCGGTGAAAACATATAAGCTTCTATGTGTGGTTCTC
AGTATTCAATTTGACCTTTAAGGCCTTATCGAATTCAGAATTGTTGTTTTCATTTATATTCGATCTGCAATGCGCAGCTGTTGTACTTCTGAATTGCTTGTTTTGGCTTTTGGCAACCGTTGATACGGTTCAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTTTGCTGGGGTTTTGTCAGT
TTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAGATACAAAGGGAGCCCATA
CTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGATGGCTCTGAGGAAGTAATT
GAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCTTGCTTCAAGGACTGAAAA
AGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGAAGAAACTAGCCAGGAAGT
CTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCATCATCACCATCTAGAAGT
TTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAGGTGTTAATTCAGAGGTT
GCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATTGAATGTCTCTGAAGCAG
GTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGATGGCGATCTAATCTGCCA
AGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATTAA
CTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGgtaagaaaatatatgatttctatttctattgtaagcttagtataatctttaatctttactaaacctaagaccttttttcagAGAAATCTTTTAATTTAGTTGGTTGTATGACCCTCATCCTCCTAGCAAGTGGCTAATATCATGGACGAGGCAGTGACAA
ATTCAAAGTCAGGCAATTAGGCACACTCCTAATATTAGAAAACTTGCACACCCTGCAATTAATTCCATGAAATGAATTCTACAATTAGAAATATCAAAGAAACTCTTTATATCAAATATTTAACTTAACTATGAGTTGGCATTGTTTAATTGTTGTTGGTTGCTTGACAAGTAATCACAACCATTGGTTTGGTTCTGAGA
TTCAAGCTGATCATTGGTTTGTTTGTTGTAGTTGCGCTCTTTATATCAAATATTTAACTTAACTATGAGTTGGCATTGGTTAATTCTTGTTGGTCACTTGACAAGTAATCATTGGTTTGGTTCTGAG
Intron 7 GTATTTGAGG ... TTTTCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.08 | 124 | 76 | 64 |
| A2 | 33.71 | 59 | 31 | 29 |
| A3 | 27.7 | 90 | 46 | 23 |
| A4 | 36.14 | 53 | 30 | 30 |
| A5 | 41.82 | 32 | 21 | 25 |
| A6 | 34.33 | 66 | 40 | 29 |
| A7 | 28.36 | 312.1 | 131 | 116 |
| A8 | 33.05 | 315 | 155 | 156 |
| A9 | 30.32 | 240.1 | 109 | 100 |
| A10 | 33.32 | 198.1 | 110 | 88 |
>TRINITY_DN120776_c4_g1_i3 from sample A1 / Example spliced isoformATATCATACATTTAAAGACATGTACGTTTCATCAAAACAAATTTATTTTCTCTGTTATGGATCTTACAATTTTCTATGTCTAGGTTGACCAAGCACTTGTTGATTGTTGACTCAAAATTTTCGTTGTCCCTGTGAGTAAATAGTTTCTTGAAAATAATCTCCTTTTCTTTTAGAGGCTATTGTGATCACTCTGATATTGC
ATTGAGTTATTTTTTACTTTTGAAAGTTTAACAAATAGTTGTTGAAAGTTTTCTTCAACTCTGATTGGTGTGTATGCTATTTGGATAGGTGTAGTTTAAAGTGTTAATACAATTATTAACATGCATACTTAATAATTGAATTTCTTCTGCAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTG
AGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATTAACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCC
ATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCAGGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTA
ATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTCAGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCA
GAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCAACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGC
TGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTTTCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTA
TTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTGGAAGTAAAAAAAA
>TRINITY_DN120776_c4_g1_i4 from sample A1 / Example unspliced isoform:CCCAGGTGACCCCACGCCAGTCGGTTTAACTCAATTCAAGTAACGGGTAAAACTCAAAAAATAGTTCCACAGGGAGTATCGGGAAAGAGCGAAAAATTGTGCTGATTCTCGCAAGGTACGCAGGGTCTTTGACTTGGGGTGTCATGCCAGGTTTTCATTTGTAATAGTGAATGTCTGCTAATTGTCGGGCCAGATGCGAG
CGACTCTCCAATAGCAAACGCCATATTCACATTCCTGGCGGTGTCAACGTTCGTTCGATGTCCGCTTTGCTCCATTTCGCGAAGAAATCTTTTGTTTACGTGAACACTCTGGAAAAATGATATTTTAGATGTCGAAGCCGCTTCAAACCCTAAATCGAGGTCACATCAATATTTTCATTGTGTTTCTGTTCCTGCATTTT
CGTTCTTCTTCTTCTTATTTTTCTATTAGCATTTCCGTTCTTCTTCTTCTTATCTATTTAGTAGCATTTTCGTCTTTCTTTGATCAAATGCGGTTAATTTTAAGCTGCAATAGTGCAAGAGTTGACAAAGCTTGCCATCCATGGCTGAATTCGTTTTATACCGTTCGTTCTTTCAATTATTGACAGTTTTAGCTTTTGCC
CGCTCTACCGTTCATGAAATTTATTGCAAATCACAGATGAATTGCCATTAATTCAATTCCTGGCTACTTATTTCATCATTTTTTTTGAAAATATAAAGACACTTGAAGAAATTTTAGATTTGTGCCCTCAGTTCTGTTTATTTCTACCTCCTTCATGGCCCTTATGTCGGTGAAAACATATAAGCTTCTATGTGTGGTTC
TCAGTATTCAATTTGACCTTTAAGGCCTTATCGAATTCAGAATTGTTGTTTTCATTTATATTCGATCTGCAATGCGCAGCTGTTGTACTTCTGAATTGCTTGTTTTGGCTTTTGGCAACCGTTGATACGGTTCAGTAGAGTCCTCTGCCTCTGTCAGAATGCTTTCGTTAGTGGTGGCATATTTTGCTGGGGTTTTGTCA
GTTTTTATCATTGAAGTCGGGGTTTTGCTCTTCATTTTCCGACGTTTGCTTCGACATGGGCCATCCAAGTCCAATTCTGCATCAAGAAAATCAGATTTGGTGGCGAATAGCTCAGATTTTTTCTTGCCCAATAAACAGGGCGTGATATGGGTGGCTGTAATATGCTTGTCAGAGCCATACAAAGATACAAAGGGAGCCCA
TACTCAGCAAATAAAAGGTTTGAAGGAAGAGCCATACAAAGACACAAAGGGAGGCCATACTCAACAAACAAGTTTGAAGGCAGCAAAGGCTAAGAAAGATTCGTTAAAGGAGATCCCTGAACTCTTGCCTGTGCAGAAACATGCCAGAATCAAAGGCCATATGCTTATTTTGACAGATTTGGATGGCTCTGAGGAAGTAA
TTGAACTTTCAGGGTGTCATGTCACAGCAGTGTCTGGTGGAGAACAATCTTCAGGAAAGTGGGCAAGAAGGTATCCAATTAAGCTGGAAAACCAGAATCGTGTCCTTGGTTATGGAAGCAGAGTTTGTTTTATATATCTTGAAACTGCTTGGGAAAAGGAAGCATGGTGCAAAGCACTTCGCCTTGCTTCAAGGACTGAA
AAAGGAGGATCTGGTCCAGGAGGAGCAGATTGGTATTGGAGGTTGAAGAAAGAATTTAACCAGTATTTTTTATGGCTGAATGAAGGTTATCCTTTGTTGCTAAAGTCAAATTCTGTTATTAGCAATCAAAGAGACAGAAAGGACAAAGATGACGCAGCTTCCTCAAAGGTACGCCTTTTCCTGAAGAAACTAGCCAGGAA
GTCTGCTAAAACTGGCAATGAAGGTAAGATAAACAATTTTCCTGCTGCAAATCAAGAAGAGAAGAAAATCAATGATGAGGCACTCATGAATCCAGATAGTTCGTCATTAACAGATTTCTCAAGCAAACCTTCTTTTTCGACAAAAAATCGTAATAATCATTTCAATGCTGAATCATCATTATCATCATCACCATCTAGAA
GTTTTGGGAACCGAAGCAAGTTGATTGGTGTTTCTCATATAGATTCAGAGAGCAGTGCTATTGTTGATAGGGATGCTGTTAGTGAGAGAGGCATCATTGACCAAGGAACTCTTTGCTGGAATTTGCTGATTTCAAGATTTTTCTTTGATTTTAAAACAAGTTCAGAAGCTACAGCCTTCAGTCAGGTGTTAATTCAGAGG
TTGCTGTCTAAGGTCAGAACTCGAAGTTACATTAGTGGAATAACTTGCACTCGGTTGGATATTGGGAAGCTCCCCCCTCATATTTGTAACATGAGAGTCCTTCCCGTGAGTGTGGATGAAGCATGGGCACTAGAGGCTGATATTGAGTATTTTGGTGGTGCAATTATTGATATTGAAACGAGATTGAATGTCTCTGAAGC
AGGTTTCCAGGAAAGACTGACCACTACTGGCATTGAATCTCAAATAACTGGGGAGGTGACAACAGGACTTTTGAACAAGGACTTTGAAGGCCTTGGAGAACAATTGGGGATGGTTAGAGATTCTGTAGAGAAAAGTGATCGAGGAGACACTTCAGATGGCACAAAGAGTTCAAACATTCCTGGATGGCGATCTAATCTGC
CAAGCTTGAAAGGAATGCTGTCTCATCTTGCCGGCCAAGTTTCACAGGTGCCTTTGGCTTTGTCAATACAAGTATTATCTCTAAAAGGGACAGTGAGGATAAGTGTTAAGCCACCTCCTTCCGACCGTATATGGTTTAGTTTTACATCAACACCAAACATCGAGTGGGGATTTGAACCATCAATTGGAGATCACAAGATT
AACTTTTCAAAAATTGCAGCATTCATAGAAAGTCGAATTGAGgtatttgagggtacattccattttgtgtattttcaatagGCAGCTGTCCAAGAAAACCTTGTGCTTCCAAATTGTGGAGATATATATATTCCATGGATGCAAGCAGAAAAAGATGACTGGGTTCCATATACTGTTGCTCCTATACCATGGACACGCCA
GGAATCTAGTGAATCTATGGGATATGATGCTTCCATTAGGCAGTCTCATGAATCTATCAGAACCAAGGCTGCTGGAAATTTATTATCAGAGGATACTAAGTCTGCTGCAGATAAACTTTCAAAGGGTGATGTTAATAATTCAAAGAATGTGCCTAATGTGTCATCTAAATTGGCACCAAGTGCAGACTCAGGTGATATTC
AGAGTCATGAGCAACCAAAATGTCATAGAGAAGTATCATCTCAGCATACTGGTACACAATCCTTAAAGTACACTACAAGTGACAATTCACTGATGCCACTCTCAGATAATGATTTACAACATGAAGATGGGTCAGAAGTACAGACTAATCTTTTAGATCATTTTGGCAGTGATGATCGGTCCCTTTCTTCCCTTTCTTCA
ACAGATGAGAAGCCAAAGAGAGGTAAGCGTTCAAAGATGATAGGCCTGGGGAAAAAAATGGGTGAGAAGCTTGAAGAGAAGAAGCGCCATATTGAAGAGAAGAGCCGTCATATAGTGGAGAAAATGAGAGGTGCTGAAAAGAATGAAGATGCCGGAAGTGAGAGTTGAAGTATGCAATTTACTTGGACATGTCCTTAGTT
TCAGGATTTTCTGCATTATTGAGATTAGTTTGTGTGATGAATAATGCATTTTCAAAAAGCATAATGCATTTTCAAAAAATGATATTTCTGGTCATTATTGAGTTATGATAACCTTGTTAGCATTCCAGTTTTTATTGGAATCTGTAGCTATTTAAAATCCTTCAATGTTATTTGAAATACTTCTGGAAGTAAAAAAAA