sp|Q2MHE4|HT1_ARATH ----> Serine/threonine/tyrosine-protein kinase HT1
Intron 1 GTAGATGTAT ... CTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.93 | 9.7 | 25.7 | 10 |
| A2 | 54.79 | 8.7 | 10.7 | 1 |
| A3 | 49.61 | 12.7 | 14 | 7 |
| A4 | 60.34 | 9 | 19.3 | 5 |
| A5 | 70.63 | 2.7 | 9.7 | 0 |
| A6 | 57.92 | 21.3 | 39 | 17 |
| A7 | 58.28 | 38 | 59.7 | 42 |
| A8 | 55.98 | 47.3 | 76.3 | 41 |
| A9 | 58.72 | 35 | 69 | 28 |
| A10 | 54.38 | 32.3 | 47 | 24 |
>TRINITY_DN116072_c0_g1_i4 from sample A1 / Example spliced isoformAAAAAACATTATGATAACAAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAA
ATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTA
CAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTC
AGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGAT
TAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
>TRINITY_DN116072_c0_g1_i5 from sample A1 / Example unspliced isoform:TTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGgtagatgtatacagtttttcaatagttttgtgggagctactgaccaaccgtatgccatttgaaggcatgtccaatctgcaagcggcatatgctgctgctttcaaggtatttaatgttatgtatgcatatgatatgtacatagaagt
ctgtcattgctgagaggagaagaatggtaggaaggcttgattctcttgagcagtgcccttgtcttttatattatactagtatgcaatgactgctatagataacgggcaatctaaaaggaagttaaagaaagctgacatgaatattgctttctttgtccagAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGG
TTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAA
AATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCA
ACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAAT
TACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAG
ATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
Intron 2 GTATTTAATG ... CTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.23 | 44 | 20 | 9.3 |
| A2 | 6.67 | 14 | 11.1 | 1 |
| A3 | 20.56 | 25 | 11.8 | 6.5 |
| A4 | 14.09 | 28 | 9.1 | 4.6 |
| A5 | 0 | 6 | 2.7 | 0 |
| A6 | 17.64 | 73 | 26.5 | 15.8 |
| A7 | 22.49 | 134 | 48.4 | 39.4 |
| A8 | 19.06 | 158 | 59.9 | 37.8 |
| A9 | 15.56 | 137 | 54.6 | 25.6 |
| A10 | 18.61 | 95 | 43.3 | 22.1 |
>TRINITY_DN116072_c0_g1_i2 from sample A1 / Example spliced isoformTGTACATTGACCAATTCTCAACGCGTAAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATG
GCAAGGACTCCATAGTCAGAAATTGGAAAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCA
GTCTGCTGTGTGTTCCGAGTCAGTTCCATCTTCTTAAAAAAAACCCATTACAGTTCTATTCTAAAATTCATTCAATGGTCTTTGGTTTTGACTCAGATACTGTTTTTCTTCGCTGCCCATCAGTCCAATTTTACTTGAATTCTTTTCCTCAGGAACCCTCGAAGTCCTTCTTCCTACCTTTCTACTCAAGCATCCACTAT
ACCAGCATATCTTCCTGCTGTAGACCCACCCTTATAACCTGCTGTAGGTAATTGGTGTAAATACCCAAACTTATTTCTCAAATTTGCTTGAGAAACATTCTCCTAGCCCATTTACCTCTGTTTTTAACTGTGAAAAATTGCTTAAAACTGTTGACCCACAGTTAATTCTGTCATTGTTCCAAATCCATTTCTAAAATTTG
CTCAAAACTATCAACTCAACTCCGTTTTCTGTCAAAATTTGCTTAAAACTATCGACCGACTTCAATTTCTGTCAAAATATGTTACACAACAAGCTTCCGTAGGCCTCTGTATCCAGTTCCAACCTCCCAATACTATTTGCAGGCGTTGACCTGCGTTTGTTTTTTCTGTTTGTGTAAAAAATGAGTTTACAACATAATTA
TATAAGCCATTTTCCTGCTTCTGTATCCCCAAAATTTGTTGTAAGTTGAAACCATTTGTAGAGCACATTCTCGAAGCCAAACATCATCTGAATCTCTTTCTCATATGTGCATATCCACCCAAAAGTAACTAACTGTTAACTTTGAAGAAGAACAGCAATTCGTGATTGAACTTCTTTCATTTTCATTGACAGAATGCATT
GCAGCTGGGTATGATGCCATATTCAGAAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGT
TGATTGATCCAAAGCTTCTCTTTGTAGGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTA
GTGAAGTTTATTGGAGCCTGCAAAGAGTCGAAGATGGTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCC
TGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGGTGCATTGTTATTGCTTCGATTTGTTTCTTGGTTGCAATAACTTTTTGCTGTTCTATGTTTTAAACATTCTGA
GCATTATTAAATCTATCTGCAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACCAACCGTATGCCATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGAGTGTAAGGCCAAGTGTAG
AGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCT
GTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTT
CAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAA
TGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTT
CAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
>TRINITY_DN116072_c0_g1_i5 from sample A1 / Example unspliced isoform:TTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACCAACCGTATGCCATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGgtatttaatgttatgtatgcatatgatatgtacatagaagt
ctgtcattgctgagaggagaagaatggtaggaaggcttgattctcttgagcagtgcccttgtcttttatattatactagtatgcaatgactgctatagataacgggcaatctaaaaggaagttaaagaaagctgacatgaatattgctttctttgtccagAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGG
TTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAA
AATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCA
ACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAAT
TACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAG
ATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
Intron 3 GTCAGTTCCA ... TCATTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.71 | 24 | 43 | 45 |
| A2 | 72.36 | 17 | 49 | 40 |
| A3 | 63.91 | 24 | 41 | 44 |
| A4 | 62.75 | 19 | 35 | 29 |
| A5 | 86.89 | 4 | 33 | 20 |
| A6 | 62.35 | 16 | 24 | 29 |
| A7 | 59.82 | 45 | 83 | 51 |
| A8 | 57.98 | 25 | 31 | 38 |
| A9 | 60.19 | 42 | 72 | 55 |
| A10 | 72.67 | 22 | 74 | 43 |
>TRINITY_DN114059_c1_g1_i1 from sample A2 / Example spliced isoformAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATGGCAAGGACTCCATAGTCAGAAATTGGA
AAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCAGTCTGCTGTGTGTTCCGAAATGCATTG
CAGCTGGGTATGATGCCATATTCAGAAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGTT
GATTGATCCAAAGCTTCTCTTTGTAGGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTAG
TGAAGTTTATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTAGTGAAGTTTATTGGAGCCTGCAAAGAG
TCGAAGATGGTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCCTGATAACCTTCTTTTGACTGCTGACCA
AAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACCA
ACCGTATGCCATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCT
CCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGT
ATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTAC
CAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTA
GAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAAT
TACTTTAAAGTTTGAATATTCAGTCCAAAAAATAAATTGCAACTCAATGGAAGCCATGGTGAATGGAAGGGACTACTGTAACTCATGAAGCTATTTAGGTCCCTGTTACCATGCAAGGCTACCTGATAGATAATATGCAATGTGCAGCCCG
>TRINITY_DN114059_c1_g1_i5 from sample A2 / Example unspliced isoform:AGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATGGCAAGGACTCCATAGTCAGAAATTGGA
AAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCAGTCTGCTGTGTGTTCCGAgtcagttcc
atcttcttaaaaaaaacccattacagttctattctaaaattcattcaatggtctttggttttgactcagatactgtttttcttcgctgcccatcagtccaattttacttgaattcttttcctcaggaaccctcgaagtccttcttcctacctttctactcaagcatccactataccagcatatcttcctgctgtagaccc
acccttataacctgctgtaggtaattggtgtaaatacccaaacttatttctcaaatttgcttgagaaacattctcctagcccatttacctctgtttttaactgtgaaaaattgcttaaaactgttgacccacagttaattctgtcattgttccaaatccatttctaaaatttgctcaaaactatcaactcaactccgttt
tctgtcaaaatttgcttaaaactatcgaccgacttcaatttctgtcaaaatatgttacacaacaagcttccgtaggcctctgtatccagttccaacctcccaatactatttgcaggcgttgacctgcgtttgttttttctgtttgtgtaaaaaatgagtttacaacataattatataagccattttcctgcttctgtatc
cccaaaatttgttgtaagttgaaaccatttgtagagcacattctcgaagccaaacatcatctgaatctctttctcatatgtgcatatccacccaaaagtaactaactgttaactttgaagaagaacagcaattcgtgattgaacttctttcattttcattgacagAATGCATTGCAGCTGGGTATGATGCCATATTCAGA
AATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGTTGATTGATCCAAAGCTTCTCTTTGTAG
GGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTAGTGAAGTTTATTGGAGAAGGTGCTCAT
GCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTAGTGAAGTTTATTGGAGCCTGCAAAGAGTCGAAGATGGTGGTGGTCACTGAACT
TCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCCTGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGTTAAGCTAGCAGATTTTG
GATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACCAACCGTATGCCATTTGAAGGCATGTCC
AATCTGCAAGCGGCATATGCTGCTGCTTTCAAGGTATTTAATGTTATGTATGCATATGATATGTACATAGAAGTCTGTCATTGCTGAGAGGAGAAGAATGGTAGGAAGGCTTGATTCTCTTGAGCAGTGCCCTTGTCTTTTATATTATACTAGTATGCAATGACTGCTATAGATAACGGGCAATCTAAAAGGAAGTTAAA
GAAAGCTGACATGAATATTGCTTTCTTTGTCCAGAGTGTAAGGCCAAGT
Intron 4 GTAGATGTAT ... TGCTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.47 | 9.7 | 39.1 | 44 |
| A2 | 74.31 | 8.7 | 27.2 | 14 |
| A3 | 70.44 | 12.7 | 30.6 | 25 |
| A4 | 78.98 | 9 | 36.2 | 28 |
| A5 | 82.49 | 2.7 | 16.3 | 6 |
| A6 | 77.49 | 21.3 | 70.8 | 73 |
| A7 | 77.27 | 38 | 120 | 134 |
| A8 | 75.44 | 47.3 | 129.4 | 158 |
| A9 | 78.9 | 35 | 122.1 | 137 |
| A10 | 75.7 | 32.3 | 99.8 | 95 |
>TRINITY_DN116072_c0_g1_i4 from sample A1 / Example spliced isoformAAAAAACATTATGATAACAAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAA
ATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTA
CAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTC
AGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGAT
TAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
>TRINITY_DN116072_c0_g1_i6 from sample A1 / Example unspliced isoform:TGTACATTGACCAATTCTCAACGCGTAAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATG
GCAAGGACTCCATAGTCAGAAATTGGAAAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCA
GTCTGCTGTGTGTTCCGAGTCAGTTCCATCTTCTTAAAAAAAACCCATTACAGTTCTATTCTAAAATTCATTCAATGGTCTTTGGTTTTGACTCAGATACTGTTTTTCTTCGCTGCCCATCAGTCCAATTTTACTTGAATTCTTTTCCTCAGGAACCCTCGAAGTCCTTCTTCCTACCTTTCTACTCAAGCATCCACTAT
ACCAGCATATCTTCCTGCTGTAGACCCACCCTTATAACCTGCTGTAGGTAATTGGTGTAAATACCCAAACTTATTTCTCAAATTTGCTTGAGAAACATTCTCCTAGCCCATTTACCTCTGTTTTTAACTGTGAAAAATTGCTTAAAACTGTTGACCCACAGTTAATTCTGTCATTGTTCCAAATCCATTTCTAAAATTTG
CTCAAAACTATCAACTCAACTCCGTTTTCTGTCAAAATTTGCTTAAAACTATCGACCGACTTCAATTTCTGTCAAAATATGTTACACAACAAGCTTCCGTAGGCCTCTGTATCCAGTTCCAACCTCCCAATACTATTTGCAGGCGTTGACCTGCGTTTGTTTTTTCTGTTTGTGTAAAAAATGAGTTTACAACATAATTA
TATAAGCCATTTTCCTGCTTCTGTATCCCCAAAATTTGTTGTAAGTTGAAACCATTTGTAGAGCACATTCTCGAAGCCAAACATCATCTGAATCTCTTTCTCATATGTGCATATCCACCCAAAAGTAACTAACTGTTAACTTTGAAGAAGAACAGCAATTCGTGATTGAACTTCTTTCATTTTCATTGACAGAATGCATT
GCAGCTGGGTATGATGCCATATTCAGAAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGT
TGATTGATCCAAAGCTTCTCTTTGTAGGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTA
GTGAAGTTTATTGGAGCCTGCAAAGAGTCGAAGATGGTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCC
TGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGgtagatgtatacagttttt
caatagttttgtgggagctactgaccaaccgtatgccatttgaaggcatgtccaatctgcaagcggcatatgctgctgctttcaagAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTT
AGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAA
TGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATA
CTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACC
TTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGG
TAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
Intron 5 GTTGGTTCAT ... GGAAAAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 42 | 13 | 8 |
| A2 | 20.39 | 41 | 11 | 10 |
| A3 | 21.35 | 70 | 21 | 17 |
| A4 | 26.58 | 29 | 11 | 10 |
| A5 | 25.58 | 16 | 5 | 6 |
| A6 | 19.8 | 79 | 23 | 16 |
| A7 | 20.69 | 138 | 38 | 34 |
| A8 | 20.27 | 116 | 32 | 27 |
| A9 | 18.88 | 101 | 24 | 23 |
| A10 | 20.51 | 124 | 37 | 27 |
>TRINITY_DN98073_c0_g1_i2 from sample A4 / Example spliced isoformAAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATGGCAAGGACTCCATAGTCAGAAATTGG
AAAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCAGTCTGCTGTGTGTTCCGAGTCAGTTC
CATCTTCTTAAAAAAAACCCATTACAGTTCTATTCTAAAATTCATTCAATGGTCTTTGGTTTTGACTCAGATACTGTTTTTCTTCGCTGCCCATCAGTCCAATTTTACTTGAATTCTTTTCCTCAGGAACCCTCGAAGTCCTTCTTCCTACCTTTCTACTCAAGCATCCACTATACCAGCATATCTTCCTGCTGTAGACC
CACCCTTATAACCTGCTGTAGGTAATTGGTGTAAATACCCAAACTTATTTCTCAAATTTGCTTGAGAAACATTCTCCTAGCCCATTTACCTCTGTTTTTAACTGTGAAAAATTGCTTAAAACTGTTGACCCACAGTTAATTCTGTCATTGTTCCAAATCCATTTCTAAAATTTGCTCAAAACTATCAACTCAACTCCGTT
TTCTGTCAAAATTTGCTTAAAACTATCGACCGACTTCAATTTCTGTCAAAATATGTTACACAACAAGCTTCCGTAGGCCTCTGTATCCAGTTCCAACCTCCCAATACTATTTGCAGGCGTTGACCTGCGTTTGTTTTTTCTGTTTGTGTAAAAAATGAGTTTACAACATAATTATATAAGCCATTTTCCTGCTTCTGTAT
CCCCAAAATTTGTTGTAAGTTGAAACCATTTGTAGAGCACATTCTCGAAGCCAAACATCATCTGAATCTCTTTCTCATATGTGCATATCCACCCAAAAGTAACTAACTGTTAACTTTGAAGAAGAACAGCAATTCGTGATTGAACTTCTTTCATTTTCATTGACAGAATGCATTGCAGCTGGGTATGATGCCATATTCAG
AAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGTTGATTGATCCAAAGCTTCTCTTTGTA
GGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTAGTGAAGTTTATTGGAGCCTGCAAAGA
GTCGAAGATGGTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCCTGATAACCTTCTTTTGACTGCTGACC
AAAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACC
AACCGTATGCCATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGC
TCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTG
TATCGAATTTATTAACAAATCTATGTAACATAAGCACTCCAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTA
CCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTT
AGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCCTA
>TRINITY_DN98073_c0_g1_i5 from sample A4 / Example unspliced isoform:AAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATGGCAAGGACTCCATAGTCAGAAATTGG
AAAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCAGTCTGCTGTGTGTTCCGAGTCAGTTC
CATCTTCTTAAAAAAAACCCATTACAGTTCTATTCTAAAATTCATTCAATGGTCTTTGGTTTTGACTCAGATACTGTTTTTCTTCGCTGCCCATCAGTCCAATTTTACTTGAATTCTTTTCCTCAGGAACCCTCGAAGTCCTTCTTCCTACCTTTCTACTCAAGCATCCACTATACCAGCATATCTTCCTGCTGTAGACC
CACCCTTATAACCTGCTGTAGGTAATTGGTGTAAATACCCAAACTTATTTCTCAAATTTGCTTGAGAAACATTCTCCTAGCCCATTTACCTCTGTTTTTAACTGTGAAAAATTGCTTAAAACTGTTGACCCACAGTTAATTCTGTCATTGTTCCAAATCCATTTCTAAAATTTGCTCAAAACTATCAACTCAACTCCGTT
TTCTGTCAAAATTTGCTTAAAACTATCGACCGACTTCAATTTCTGTCAAAATATGTTACACAACAAGCTTCCGTAGGCCTCTGTATCCAGTTCCAACCTCCCAATACTATTTGCAGGCGTTGACCTGCGTTTGTTTTTTCTGTTTGTGTAAAAAATGAGTTTACAACATAATTATATAAGCCATTTTCCTGCTTCTGTAT
CCCCAAAATTTGTTGTAAGTTGAAACCATTTGTAGAGCACATTCTCGAAGCCAAACATCATCTGAATCTCTTTCTCATATGTGCATATCCACCCAAAAGTAACTAACTGTTAACTTTGAAGAAGAACAGCAATTCGTGATTGAACTTCTTTCATTTTCATTGACAGAATGCATTGCAGCTGGGTATGATGCCATATTCAG
AAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGTTGATTGATCCAAAGCTTCTCTTTGTA
GGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTAGTGAAGgttggttcattgtgccattc
ttccagagagtaactttttaaggaatgacaaaacaacttctgaaaaaaatgatcttatctcatgttgaactgtgcattttgtttccaaatattatttttgttgattggacatgtgaccatgcaacagccttagagagtgactttgacctcatctttcggatgctgagtttttatgtggcattttatagaatgaacctgtt
tgtcgaaatgcctttcattgtatagatttattgaaggctaggttctgagtttggcctatctgacatgccaatattgccaatgttttccccctttccactttgtgcttctaatctctgcaattctttaagggaaagacttctgaataggttgggtacttctggaaaaacagTTTATTGGAGCCTGCAAAGAGTCGAAGATG
GTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCCTGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGT
TAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACCAACCGTATGC
CATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAAT
ACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTT
ATTAACAAATCTATGTAACATAAGCACTCCAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTC
TGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTT
ATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCCTA
Intron 6 GTGCATTGTT ... CTTTGTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 15 | 2 | 10 |
| A2 | 7.69 | 12 | 0 | 1 |
| A3 | 46.67 | 8 | 0 | 7 |
| A4 | 33.33 | 10 | 2 | 5 |
| A5 | 0 | 1 | 0 | 0 |
| A6 | 32.69 | 35 | 2 | 17 |
| A7 | 43.75 | 54 | 4 | 42 |
| A8 | 41.41 | 58 | 1 | 41 |
| A9 | 30.11 | 65 | 0 | 28 |
| A10 | 33.8 | 47 | 0 | 24 |
>TRINITY_DN40225_c0_g1_i1 from sample A6 / Example spliced isoformAATGCATTGCAGCTGGGTATGATGCCATATTCAGAAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGA
CAAATGGTTGATTGATCCAAAGCTTCTCTTTGTAGGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATA
AGAATTTAGTGAAGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCT
GGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAA
AACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTT
TAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATG
TATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCAC
TTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCAGTCCAAAAAATAAATTGCAACTCAATGGAAGCCATGGTGAATGGAAGGGACTACTGTAACTCATGAAGCTATTTAGGTCCCTGTTACCATGCAAGGCT
ACCTGATAGATAATATGCAATGTGCAGCCCTCGTAAATCCCAGGTATGTAAGTATTCCGGTGCCACTGCTGTTGTTGTTGATGGTTTTTAATGCGGATATATTATATAACAGGCTGTAGAAATGTGATATTTTAAAGGCAGGAATCGTATATATCATGATTGCCTATTACAATAGCATTGCAAGCTACATGCAACATCAG
CATCACTTGGCTCAATAACGGTACAATCGATTCTCCA
>TRINITY_DN40225_c0_g1_i3 from sample A6 / Example unspliced isoform:TGACTGCAGAAACTGGCACTTACAGATGGATGGCTCCTGAGgtgcattgttattgcttcgatttgtttcttggttgcaataactttttgctgttctatgttttaaacattctgagcattattaaatctatctgcagttgtacagtactgtaacactaagacgtggagaaaaaaaacattatgataacaaggtagatgtat
acagtttttcaatagttttgtgggagctactgaccaaccgtatgccatttgaaggcatgtccaatctgcaagcggcatatgctgctgctttcaaggtatttaatgttatgtatgcatatgatatgtacatagaagtctgtcattgctgagaggagaagaatggtaggaaggcttgattctcttgagcagtgcccttgtct
tttatattatactagtatgcaatgactgctatagataacgggcaatctaaaaggaagttaaagaaagctgacatgaatattgctttctttgtccagAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGT
ACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAG
GAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAA
CCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCAT
CTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTT
GGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCAGTCCAAAAAATAAATTGCAACTCAATGGAAGCCATGGTGAATGGAAGGGACTACTGTAACTCATGAAGCTATTTAGGTCCCTGTTACCATGCAAGGCTACCTGATAGATAATATGCAATGTGCAGCCCTCGTAAATCCCAG
GTATGTAAGTATTCCGGTGCCACTGCTGTTGTTGTTGATGGTTTTTAATGCGGATATATTATATAACAGGCTGTAGAAATGTGATATTTTAAAGGCAGGAATCGTATATATCATGATTGCCTATTACAATAGCATTGCAAGCTACATGCAACATCAGCATCACTTGGCTCAATAACGGTACAATCGATTCTCCA
Intron 7 GTGCATTGTT ... CTATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.25 | 33.9 | 5.7 | 9 |
| A2 | 15.46 | 36 | 3.3 | 6.5 |
| A3 | 10.62 | 25.3 | 1.7 | 3 |
| A4 | 15.2 | 28.8 | 3.2 | 5 |
| A5 | 42.37 | 17.1 | 0.3 | 12 |
| A6 | 17.05 | 59.4 | 8.7 | 12 |
| A7 | 15.25 | 120.2 | 12.7 | 21 |
| A8 | 19.64 | 92.9 | 5.8 | 21.8 |
| A9 | 16.06 | 117.3 | 13.3 | 21.8 |
| A10 | 13.05 | 106 | 10 | 15.5 |
>TRINITY_DN116072_c0_g1_i6 from sample A1 / Example spliced isoformTGTACATTGACCAATTCTCAACGCGTAAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATG
GCAAGGACTCCATAGTCAGAAATTGGAAAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCA
GTCTGCTGTGTGTTCCGAGTCAGTTCCATCTTCTTAAAAAAAACCCATTACAGTTCTATTCTAAAATTCATTCAATGGTCTTTGGTTTTGACTCAGATACTGTTTTTCTTCGCTGCCCATCAGTCCAATTTTACTTGAATTCTTTTCCTCAGGAACCCTCGAAGTCCTTCTTCCTACCTTTCTACTCAAGCATCCACTAT
ACCAGCATATCTTCCTGCTGTAGACCCACCCTTATAACCTGCTGTAGGTAATTGGTGTAAATACCCAAACTTATTTCTCAAATTTGCTTGAGAAACATTCTCCTAGCCCATTTACCTCTGTTTTTAACTGTGAAAAATTGCTTAAAACTGTTGACCCACAGTTAATTCTGTCATTGTTCCAAATCCATTTCTAAAATTTG
CTCAAAACTATCAACTCAACTCCGTTTTCTGTCAAAATTTGCTTAAAACTATCGACCGACTTCAATTTCTGTCAAAATATGTTACACAACAAGCTTCCGTAGGCCTCTGTATCCAGTTCCAACCTCCCAATACTATTTGCAGGCGTTGACCTGCGTTTGTTTTTTCTGTTTGTGTAAAAAATGAGTTTACAACATAATTA
TATAAGCCATTTTCCTGCTTCTGTATCCCCAAAATTTGTTGTAAGTTGAAACCATTTGTAGAGCACATTCTCGAAGCCAAACATCATCTGAATCTCTTTCTCATATGTGCATATCCACCCAAAAGTAACTAACTGTTAACTTTGAAGAAGAACAGCAATTCGTGATTGAACTTCTTTCATTTTCATTGACAGAATGCATT
GCAGCTGGGTATGATGCCATATTCAGAAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGT
TGATTGATCCAAAGCTTCTCTTTGTAGGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTA
GTGAAGTTTATTGGAGCCTGCAAAGAGTCGAAGATGGTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCC
TGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTT
CAATAGTTTTGTGGGAGCTACTGACCAACCGTATGCCATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGAGTGTAAGGCCAAGTGTAGAGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTT
AGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCTGTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAA
TGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTTCAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATA
CTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAATGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACC
TTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTTCAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGG
TAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA
>TRINITY_DN116072_c0_g1_i2 from sample A1 / Example unspliced isoform:TGTACATTGACCAATTCTCAACGCGTAAGCTCACCACACTGTAGCGTAGGTCGGTGCATGTAATTGAGCATGAGGGAACTCACAACCTACTTTTGACATTTTAGTCGGTGATAGCCACGAATTTGTAAGCTTGAAGCATGGTGAGAGGAGAGTTCCTTCTGCCTTCCTAGATGCTTCATGGGGCTGCTCTAAATTCCATG
GCAAGGACTCCATAGTCAGAAATTGGAAAGCACATGGCGATTTGGGAGTTGCCAAACATGGGATTTTGAACCAATGTTTTCTATCTTCTACGATCTTCTTTTTACTTATTCGACCAAAACTTGCTGCTGATGACAGGGAAGAATGAAGGACACTCTCAGAGGGATAAAGGACAATCTAAGGATCTCATTGTCTCCCAGCA
GTCTGCTGTGTGTTCCGAGTCAGTTCCATCTTCTTAAAAAAAACCCATTACAGTTCTATTCTAAAATTCATTCAATGGTCTTTGGTTTTGACTCAGATACTGTTTTTCTTCGCTGCCCATCAGTCCAATTTTACTTGAATTCTTTTCCTCAGGAACCCTCGAAGTCCTTCTTCCTACCTTTCTACTCAAGCATCCACTAT
ACCAGCATATCTTCCTGCTGTAGACCCACCCTTATAACCTGCTGTAGGTAATTGGTGTAAATACCCAAACTTATTTCTCAAATTTGCTTGAGAAACATTCTCCTAGCCCATTTACCTCTGTTTTTAACTGTGAAAAATTGCTTAAAACTGTTGACCCACAGTTAATTCTGTCATTGTTCCAAATCCATTTCTAAAATTTG
CTCAAAACTATCAACTCAACTCCGTTTTCTGTCAAAATTTGCTTAAAACTATCGACCGACTTCAATTTCTGTCAAAATATGTTACACAACAAGCTTCCGTAGGCCTCTGTATCCAGTTCCAACCTCCCAATACTATTTGCAGGCGTTGACCTGCGTTTGTTTTTTCTGTTTGTGTAAAAAATGAGTTTACAACATAATTA
TATAAGCCATTTTCCTGCTTCTGTATCCCCAAAATTTGTTGTAAGTTGAAACCATTTGTAGAGCACATTCTCGAAGCCAAACATCATCTGAATCTCTTTCTCATATGTGCATATCCACCCAAAAGTAACTAACTGTTAACTTTGAAGAAGAACAGCAATTCGTGATTGAACTTCTTTCATTTTCATTGACAGAATGCATT
GCAGCTGGGTATGATGCCATATTCAGAAATGGGTTCAGGGGAGGAGAAGAAAATCCCATGGGCAGAGTCAGTAAAAGCTACTAGAATCCTTCCAGAGGGCACCCAGGATGGACCCCTGTATACTGAGCAGCAAGCTGACCGGAGCCCAGTATCAATGACGAGGAGCCCTTCTTTTGATTTCCAGTTGGATGACAAATGGT
TGATTGATCCAAAGCTTCTCTTTGTAGGGCCAAAGATTGGAGAAGGTGCTCATGCAAAAGTATATGAGGGCAAGTACAAAGAAAAGAATGTTGCGATCAAAATCATTCAACTAGCGGATACCCCTGAGGAAAGAGCTAAACAGGAAGGACGTTTTGCAAGAGAGGTTACTTTGTTATCACGTGTGCAACATAAGAATTTA
GTGAAGTTTATTGGAGCCTGCAAAGAGTCGAAGATGGTGGTGGTCACTGAACTTCTATTAGGTGGATCACTGCGGAAGTACATGATGAGTTTACGGCCAAAGCACTTAGATATGCATGTTGCTCTTAGTTTTGCACTGGACATAGCTCAAGTTATGGAATGCTTACATGGAAATGGAATTATTCACCGTGATCTTAAGCC
TGATAACCTTCTTTTGACTGCTGACCAAAAGAAAGTTAAGCTAGCAGATTTTGGATTGGCAAGAGAGGAGACCTTAACTGAAATGATGACTGCAGAAACTGGCACTTACCGATGGATGGCTCCTGAGgtgcattgttattgcttcgatttgtttcttggttgcaataactttttgctgttctatgttttaaacattctga
gcattattaaatctatctgcagTTGTACAGTACTGTAACACTAAGACGTGGAGAAAAAAAACATTATGATAACAAGGTAGATGTATACAGTTTTTCAATAGTTTTGTGGGAGCTACTGACCAACCGTATGCCATTTGAAGGCATGTCCAATCTGCAAGCGGCATATGCTGCTGCTTTCAAGAGTGTAAGGCCAAGTGTAG
AGAATCTTCCAGAAGAATTGGTTTTCATTTTACAATGCTGCTGGGCTGAGGATCCAAATCTCCGTCCTAACTTCACTCAGATAGTACGGATGCTTAGCGCATTTCTTTCATCTCTTCCAGCTCCTGAAAATACACCACCACCACAGATTGTTGCCTCCAAATCTAGCAGCTCTCCAATGGAATCTCCTGGTACAAGTTCT
GTGGAGGAGAGGAGTCAACAAAATATAAATGCAAAGTTAGAAAACTCATCCCGACGACTGCTGCTATGTTTTGGCAATTGCTTAGGAGCTTGAAATGGCCTTATTTGGAGAAAAGAGACTGTATCGAATTTATTAACAAATCTATGTAACATAAGCACTACAAAATTCTAGGTGAATCTACACTGTGAGAGCCACCATTT
CAGACGTCATATGTACATTCAACAGTTGTCCAACATTAGCTTTAATTGATAATGTGAAAGCCACTTTTGGTTTAGCTAATGCAAACCATTGTATACTAGAAGCAGGCATCATGGATTACTACCAAGTCCTCTGTTCAATTGGTGAATCGATGCTACCTTCAGATAGAGGGGGAGTGGATATTATGCAAAATACACAGAAA
TGTAAAGATATCAATAGAAATTACTATTATGAACCTTTGATGTATGGCTAAGTATTTATGAGCTTTGATGTACATCTAAAAGCATCTGATTTACCTTAAGGGGTCTTTTCTGACCAACTTTAGAGGGAGTTATTTTCGAAGAGCAACATAACAAGGGGATTAGATGTTGATATTTTGGTTCAATTTAATGGTACATTGTT
CAGTTATTAGAGACCTGAAAGATGGCTCTTTTGTCATCTCACTTAGTTGTTACTGAGGTGCACTGTCTGCAATCTTTTAACTGTTGGTGCATTGGTAATTGTCTTATACTTGGCCCATAAATTACTTTAAAGTTTGAATATTCA