NA ----> NA

Intron 1 GCGAACCCTA ... CTCTCAGGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.13	18	37	56.3
A2	72.7	10	17.7	52
A3	70.07	12	17	46.7
A4	73.04	15	36	60
A5	74.93	4	5.7	27
A6	57.39	56	42	136.3
A7	56.65	94	93	185
A8	65.09	49	73	145.3
A9	71.77	41	88.7	142.3
A10	64.57	66	98.3	175

>TRINITY_DN108757_c2_g2_i1 from sample A2 / Example spliced isoform

ATTAGCAGGGCTGAAGCATTTGAAAGGCTGTCAAGGAGTCCATGACTGCTTAGGTACAGAAGGTGTACTTCGCGTGAGCCTAGGCTGTTTTCTATTTTATTCCACCATGTTTTTTACAACAGTTGGATCTAGAAAGGTGCATGAATCTCGTGACTCATGGCATTCAGGATGGTGGCCTCTGAAGAGCTTTATGTGGATTA
CTTTCATGGTGGTCCCATTTTTCGTTCCATCAGCTTTCATTCAATTCTATGGTGAAATTGCCAGATTTGGTGCTGGGATATTTCTCATCATACAACTTATAAGTGTAATCAATTTCATCACCTGGTGGAATGACTTTTGGCTGTCAGAAAAACGTGTTGATGAATGTGAACCAGCAGCAGAGAAATGTAATACAAGGTCA
CAGGCAACAGGGAGAGGAGACTGGATCACAATTATTAGTTTTCTAATTGCAATGCTTGCAATAGTAATAGCAACATTTTCTACTGGCGTTGATTCAAAATCTTTCGAATTTCAGAGAGATGAAGTCGAGGAAGGGGATGATGTTCCATATAGTTATGGATTTTTCCATTTTATTTTTTCTATGGGAGCCATGTACTTTGG
TATGCTATTTATTGGTTGGAACTTGCACCAAACGATGCAAAGGTGGAGCATAGATGTTGGCTGGGTTAGTACATGGGTGAAGATTGTGAACGAATGGCTTGCTGCAGGGCTATTCATTTGGACATTGATTGCTCCCCTTGTCTGGAAGAAAAAAACTAGTGGTGAATCGACATCGAACACCTCAATCTGATTGGCTGATA
TTCAATTCATTGACTATGGCTTGGGATGCATTTGCGAGTCTATAATTCTTCGATATTTACTATTTCCTTGTACATTATGTGGCCCTGATAAGGTCGCCTTCCAACAGAGAGCATCTATTGCCGGTTTTCAAGGAAAATTCGAGTTGTATGTTCTCAGGATTGAAAAAATAGGCAAAGTTCATGCGTGAATTTAGTGATTT
TGAAGACTGCAGTCACACCAAATGTCAATGCAAGGATAAGGACTCTATTGGGCTATTCATTAGTACCTTAAGAGTTGCATTTGGTGGCAGCAGAAAACTTATACTTTTTGAAGAAACGCTCTTTCTTATCAAAGTAAAAGGACTGTCAAATCTTTTTCACAAAGAAGCTGCTTTGATATCATAGCATAGGAGAAGAGAAT
ATACAAAGTTGTCAAACATAATATTTTTTGTATTCAACATTGATTTTTTTTTATACGTTTGAA

>TRINITY_DN108757_c2_g2_i3 from sample A2 / Example unspliced isoform:

TTCAACTAAACATGTGTTATAAATCAAATGCTTCTAGGGATTTAAACTTTCAAGTACCCTTTGCAATTCTCCAGTGTCTAACCAAGGCTACAGGAGTCCTATGAAATCAGTGCCTAAAGTATGGATGCCATTTGATTGTCAATTGTACATGCACAAGCACTTGATGTAATATCAAACATTTTTATTTGAATATTTTTCCT
TACACTATTGGCCCACAGTTATAGGCCTCTGAATTGTTCACCTTAACATTACCTTAGCTATTTTATTCCACCATGTTTTTTACAACAGTTGGATCTAGAAAGGTGCATGAATCTCGTGACTCATGGCATTCAGGATGGTGGCCTCTGAAGAGCTTTATGTGGATTACTTTCATGGTGGTCCCATTTTTCGTTCCATCAGC
TTTCATTCAATTCTATGGTGAAATTGCCAGATTTGGTGCTGGGATATTTCTCATCATACAACTTATAAGTGTAATCAATTTCATCACCTGGTGGAATGACTTTTGGCTGTCAGAAAAACGTGTTGATGAATGgcgaaccctagtgttcacattgacaacgacgacctatgctgcttccctaactggaatcatattgatgt
acatttggtatgctccaagcccatcatgcgttctcaacataatttttatcacatggacactttttcttcttccagtgataactagcatctccctacattcaaaagttaatgcaagccttatgacatcagcacttatggggatttatcttgtattcctttgctggactgctctcaggagTGAACCAGCAGCAGAGAAATGT
AATACAAGGTCACAGGCAACAGGGAGAGGAGACTGGATCACAATTATTAGTTTTCTAATTGCAATGCTTGCAATAGTAATAGCAACATTTTCTACTGGCGTTGATTCAAAATCTTTCGAATTTCAGAGAGATGAAGTCGAGGAAGGGGATGATGTTCCATATAGTTATGGATTTTTCCATTTTATTTTTTCTATGGGAGC
CATGTACTTTGGTATGCTATTTATTGGTTGGAACTTGCACCAAACGATGCAAAGGTGGAGCATAGATGTTGGCTGGGTTAGTACATGGGTGAAGATTGTGAACGAATGGCTTGCTGCAGGGCTATTCATTTGGACATTGATTGCTCCCCTTGTCTGGAAGAAAAAAACTAGTGGTGAATCGACATCGAACACCTCAATCT
GATTGGCTGATATTCAATTCATTGACTATGGCTTGGGATGCATTTGCGAGTCTATAATTCTTCGATATTTACTATTTCCTTGTACATTATGTGGCCCTGATAAGGTCGCCTTCCAACAGAGAGCATCTATTGCCGGTTTTCAAGGAAAATTCGAGTTGTATGTTCTCAGGATTGAAAAAATAGGCAAAGTTCATGCGTGA
ATTTAGTGATTTTGAAGACTGCAGTCACACCAAATGTCAATGCAAGGATAAGGACTCTATTGGGCTATTCATTAGTACCTTAAGAGTTGCATTTGGTGGCAGCAGAAAACTTATACTTTTTGAAGAAACGCTCTTTCTTATCAAAGTAAAAGGACTGTCAAATCTTTTTCACAAAGAAGCTGCTTTGATATCATAGCATA
GGAGAAGAGAATATACAAAGTTGTCAAACATAATATTTTTTGTATTCAACATTGATTTTTTTTTATACGTTTGAA