sp|Q8H0V6|AB3F_ARATH ----> ABC transporter F family member 3
Intron 1 GTATAGTGAA ... ATGGTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.1 | 186.7 | 4 | 1 |
| A2 | 2.62 | 148.3 | 4 | 0 |
| A3 | 0.51 | 198.3 | 1 | 0 |
| A4 | 0 | 174 | 0 | 0 |
| A5 | 0 | 51 | 0 | 0 |
| A6 | 0 | 146 | 0 | 0 |
| A7 | 0 | 252.7 | 0 | 0 |
| A8 | 0 | 190.7 | 0 | 0 |
| A9 | 0 | 237 | 0 | 0 |
| A10 | 0 | 149 | 0 | 0 |
>TRINITY_DN126959_c9_g4_i1 from sample A1 / Example spliced isoformATTCATTTCATTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGGAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAA
CATCAACAACCCCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCCTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTC
GATTCCGGATGTGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGA
GCGTGATCGTGCTAAGCTTGAACGAAGGAGGAGGAAGGACGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTCAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAG
AGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCAGTCCAGTGTGTTCTAAAC
TCTGATGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGC
AGCATCTATTCTTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGC
CGAAAACACTTATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTC
ATTGATAAGTTCCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATT
GTTCAAGAACCTGAATTTTGGTATAGATCTTGACAGTCGTCTTTCGATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATC
CTCTCTTGTATATGATGCGGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACGGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCAT
CTTGATCTAGATGCTGTCGAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTT
GCTGCAATATTTTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCCAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTG
TAATATTTCTTCTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCA
TTGTGAAGGGAGACCAAAACCACAACTGGAACAGACAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTAGAGGAAAGTCTTAGC
ATGTTCAAAATGTTTTTGCTCTGCGTGACCAAGATCTGAAAATGGACAGTAATCAAGCATTTTTTAAAAGGTTATTTCCCACTATCCATTCATTATTTCATTTTGTTTATCAACTTAGTAATGTTATATATAGTAGAGCCAAGTGCCTGTATTTTCCCCTAACTTTTATAATATAATGGGAGTTATAGACTATGTCAGAG
TAAGATTAATAATGTGACCAACTAAAGATGGCAATTGATTTTAATGACTATAATGTTATAAATAGGTACTTCAATAAATATAAACTGTTTTTAGATGTCGATCTTTGAATCTTGATTCATGCTTGGCACTGTTCCAAACTATACCTTACTGTTGTTTTACAAAGCTTTTCATATCCCTTTTAAATATTGATATATTAACA
TTCTAGAGTTTTGAAGTAGAATATTTGTGAATGGTGGGGCATCGATGGCATCATTTGGGTGATGGAAGTAATGATGGAATTGGAGGCATTTTGGCCATCATATAGAGTAAAAAATTTATCTCAGCCGTCACGGAAAACATATAAAACAGCAAATACGGTTTACAAAATGGTTTAAACCGTCAAATTTGATGGGCAAGGCT
CTTTCCAAATTTCTACCCTGGATGGAAGTGCTTCTAAGTTGAGAATCTTGATACCACAATCATACATAGTAATAAAATCATTATGTGGTTATTAGTTATTACCAAAATTATCAGTCTCCTAGAATGCACGGAGTCTTCCTGAGTCAATAAAAAAGGAGTAATCGCCCAAGTTTCTGCCTAGAAACTTGTGACTTGCCCAA
ATATTAGGAAACTTGCCGAGACTCACCCAGACTCACGAGTTTGACATAAGATTCCCGAGTTAGGAAACTCTGTAGGCTTTTGGGCTTGTATTCAGAACGGAAAAAAAGTAAATATA
>TRINITY_DN126959_c9_g4_i2 from sample A1 / Example unspliced isoform:ATTCATTTCATTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGGAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAA
CATCAACAACCCCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCCTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTC
GATTCCGGATGTGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGA
GCGTGATCGTGCTAAGCTTGAACGAAGGAGGAGGAAGGACGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTCAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAG
AGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCAGTCCAGTGTGTTCTAAAC
TCTGATGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGC
AGCATCTATTCTTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGC
CGAAAACACTTATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGTTATT
TTTTATTTTTTCCATATGCTAAATTATTTTACTCTGATGAAAGTCTGGCAACTATGTCCCATTGACCTACTTTTGTGGTCATTTGTTGGACATTAATAAAATTATCTTATCACGTTGTGATCTTTACTTTTGTACCGAGAGATGTTTGCCCAAGGAATGAAATAAGTTACTAGTGTTTATTGTTTCCAGGCTTTCATTGA
TAAGTTCCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGgtatagtgaattatgctttcggagtggtcagtgaacattgatacgccatagacctacagtattgtaattgtgtagatctactctaatttcttttagaatcaagccattcttggtgattgttggtagaatttgtttggtcagtatttac
ccaagtgataaatttatgaactttgaggtcatctttgttgatggttttagGCTTTGGATCGCGTTGGTCAT
Intron 2 GTATATGGAT ... TGTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 3 | 0 | 2 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | 100 | 0 | 2 | 2 |
| A4 | 27.27 | 8 | 6 | 0 |
| A5 | 33.33 | 1 | 1 | 0 |
| A6 | 35.29 | 11 | 3 | 9 |
| A7 | 13.04 | 20 | 6 | 0 |
| A8 | 31.03 | 20 | 9 | 9 |
| A9 | 26.67 | 22 | 9 | 7 |
| A10 | 21.74 | 9 | 3 | 2 |
>TRINITY_DN44814_c0_g3_i1 from sample A7 / Example spliced isoformTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGTAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAACATAAACAACC
CCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCGTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTCGATTCCGGATG
TGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGAGCGTGATCGTG
CTAAGCTTGAACGAAGGAGGAGGAAGGATGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTTAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAGAGCTCATTAAG
GATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCACTCCAGTGTGTTCTAAACTCTGATGTGGA
GAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGCAGCATCTATTC
TTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGCCGAAAACACTT
ATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTCATTGATAAGTT
CCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATTGTTCAAGAACC
TGAATTTTGGTATAGATCTTGACAGTCGTCTTTCGATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATCCTCTCTTGTAT
ATGATGCGGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACGGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCATCTTGATCTAGA
TGCTGTCGAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTTGCTGCAATATT
TTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCTAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTGTAATATTTCTT
CTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCATTGTGAAGGGA
GACCAAAACCACAACTGGAACAGAAAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTTGAGGAAAGTCTTAGCATGTTCAAAAT
GTTTTTGCTCTGCGTGACCAAGACCTGAAAATGGAGAGTAATCAAGCATTTTTTGAAAGGTGCAATTGGAGTGTATTTGATCACATTTACAACAAAGTGTAACAAGTTGGAGTATGGGCAGTTGGACAAGTTGGTCTATATTTACAGAAACCTTTGCCTTATGAAACATTTGCCACAAGGCAAATAACACGTTAACATCA
GAATTTTGGGTTAAGTAATCGGACTAGAAACAACTAGTTCTACATGTTAGGTGTCCTTATAGATGAGTCATTAGTGAAAACATTGTTTGTTTTGAATTTTATGTCCTGCTTTATCTGTCAACCTTGAAGGTTTACCCTTCAGGCATACGCATTTGTGACTCACTGCAATTCAAATTTTATATTATCATTATTCATGAGGT
GAATTGATGGATAAATTGTCATTTTATCGTTTATGGGCTTGAAATGTTATTATTTTTACTACAC
>TRINITY_DN44814_c0_g3_i3 from sample A7 / Example unspliced isoform:TTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGTAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAACATAAACAACC
CCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCGTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTCGATTCCGGATG
TGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGAGCGTGATCGTG
CTAAGCTTGAACGAAGGAGGAGGAAGGATGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTTAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAGAGCTCATTAAG
GATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCACTCCAGTGTGTTCTAAACTCTGATGTGGA
GAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGCAGCATCTATTC
TTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGCCGAAAACACTT
ATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTCATTGATAAGTT
CCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATTGTTCAAGAACC
TGAATTTTGGTATAGATCTTGACAGTCGTCTTTCGATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATCCTCTCTTGTAT
ATGATGCGGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACGGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCATCTTGATCTAGA
TGCTGTCGAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTTGCTGCAATATT
TTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCTAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTGTAATATTTCTT
CTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCATTGTGAAGGGA
GACCAAAACCACAACTGGAACAGAAAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTTGAGGAAAGTCTTAGCATGTTCAAAAT
GTTTTTGCTCTGCGTGACCAAGACCTGAAAATGGAGAGTAATCAAGCATTTTTTGAAAGGTGCAATTGGAGTGTATTTGATCACATTTACAACAAAGTGTAACAAGTTGGAGTATGGGCAGTTGGACAAGTTGGTCTATATTTACAGAAACCTTTGCCTTATGAAACATTTGCCACAAGgtatatggatcaaatagtaat
gataaacattttccaaaatctggttctcttgattatttgacttggtttgacacatagattgacaatctttcctgcacattgtatttcagGCAAATAACACGTTAACATCAGAATTTTGGGTTAAGTAATCGGACTAGAAACAACTAGTTCTACATGTTAGGTGTCCTTATAGATGAGTCATTAGTGAAAACATTGTTTGT
TTTGAATTTTATGTCCTGCTTTATCTGTCAACCTTGAAGGTTTACCCTTCAGGCATACGCATTTGTGACTCACTGCAATTCAAATTTTATATTATCATTATTCATGAGGTGAATTGATGGATAAATTGTCATTTTATCGTTTATGGGCTTGAAATGTTATTATTTTTACTACAC
Intron 3 GTTATTTTTT ... TTGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.02 | 174 | 55 | 5 |
| A2 | 25.97 | 134 | 47 | 4 |
| A3 | 21.68 | 177 | 49 | 0 |
| A4 | 19.16 | 135 | 32 | 0 |
| A5 | 28.17 | 51 | 20 | 0 |
| A6 | 20.79 | 160 | 42 | 0 |
| A7 | 23.08 | 280 | 84 | 0 |
| A8 | 19.31 | 163 | 39 | 0 |
| A9 | 21.45 | 227 | 62 | 0 |
| A10 | 23.2 | 149 | 45 | 0 |
>TRINITY_DN126959_c9_g4_i1 from sample A1 / Example spliced isoformATTCATTTCATTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGGAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAA
CATCAACAACCCCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCCTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTC
GATTCCGGATGTGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGA
GCGTGATCGTGCTAAGCTTGAACGAAGGAGGAGGAAGGACGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTCAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAG
AGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCAGTCCAGTGTGTTCTAAAC
TCTGATGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGC
AGCATCTATTCTTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGC
CGAAAACACTTATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTC
ATTGATAAGTTCCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATT
GTTCAAGAACCTGAATTTTGGTATAGATCTTGACAGTCGTCTTTCGATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATC
CTCTCTTGTATATGATGCGGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACGGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCAT
CTTGATCTAGATGCTGTCGAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTT
GCTGCAATATTTTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCCAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTG
TAATATTTCTTCTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCA
TTGTGAAGGGAGACCAAAACCACAACTGGAACAGACAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTAGAGGAAAGTCTTAGC
ATGTTCAAAATGTTTTTGCTCTGCGTGACCAAGATCTGAAAATGGACAGTAATCAAGCATTTTTTAAAAGGTTATTTCCCACTATCCATTCATTATTTCATTTTGTTTATCAACTTAGTAATGTTATATATAGTAGAGCCAAGTGCCTGTATTTTCCCCTAACTTTTATAATATAATGGGAGTTATAGACTATGTCAGAG
TAAGATTAATAATGTGACCAACTAAAGATGGCAATTGATTTTAATGACTATAATGTTATAAATAGGTACTTCAATAAATATAAACTGTTTTTAGATGTCGATCTTTGAATCTTGATTCATGCTTGGCACTGTTCCAAACTATACCTTACTGTTGTTTTACAAAGCTTTTCATATCCCTTTTAAATATTGATATATTAACA
TTCTAGAGTTTTGAAGTAGAATATTTGTGAATGGTGGGGCATCGATGGCATCATTTGGGTGATGGAAGTAATGATGGAATTGGAGGCATTTTGGCCATCATATAGAGTAAAAAATTTATCTCAGCCGTCACGGAAAACATATAAAACAGCAAATACGGTTTACAAAATGGTTTAAACCGTCAAATTTGATGGGCAAGGCT
CTTTCCAAATTTCTACCCTGGATGGAAGTGCTTCTAAGTTGAGAATCTTGATACCACAATCATACATAGTAATAAAATCATTATGTGGTTATTAGTTATTACCAAAATTATCAGTCTCCTAGAATGCACGGAGTCTTCCTGAGTCAATAAAAAAGGAGTAATCGCCCAAGTTTCTGCCTAGAAACTTGTGACTTGCCCAA
ATATTAGGAAACTTGCCGAGACTCACCCAGACTCACGAGTTTGACATAAGATTCCCGAGTTAGGAAACTCTGTAGGCTTTTGGGCTTGTATTCAGAACGGAAAAAAAGTAAATATA
>TRINITY_DN126959_c9_g4_i2 from sample A1 / Example unspliced isoform:ATTCATTTCATTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGGAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAA
CATCAACAACCCCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCCTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTC
GATTCCGGATGTGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGA
GCGTGATCGTGCTAAGCTTGAACGAAGGAGGAGGAAGGACGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTCAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAG
AGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCAGTCCAGTGTGTTCTAAAC
TCTGATGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGC
AGCATCTATTCTTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGC
CGAAAACACTTATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGgttatt
ttttattttttccatatgctaaattattttactctgatgaaagtctggcaactatgtcccattgacctacttttgtggtcatttgttggacattaataaaattatcttatcacgttgtgatctttacttttgtaccgagagatgtttgcccaaggaatgaaataagttactagtgtttattgtttccagGCTTTCATTGA
TAAGTTCCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGTATAGTGAATTATGCTTTCGGAGTGGTCAGTGAACATTGATACGCCATAGACCTACAGTATTGTAATTGTGTAGATCTACTCTAATTTCTTTTAGAATCAAGCCATTCTTGGTGATTGTTGGTAGAATTTGTTTGGTCAGTATTTAC
CCAAGTGATAAATTTATGAACTTTGAGGTCATCTTTGTTGATGGTTTTAGGCTTTGGATCGCGTTGGTCAT
Intron 4 GTATGCTTTG ... CTATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.23 | 147 | 0 | 47 |
| A2 | 26.13 | 147 | 0 | 52 |
| A3 | 26.51 | 122 | 0 | 44 |
| A4 | 19.35 | 150 | 0 | 36 |
| A5 | 32.35 | 46 | 0 | 22 |
| A6 | 28 | 324 | 0 | 126 |
| A7 | 29.12 | 482 | 0 | 198 |
| A8 | 25.18 | 511 | 0 | 172 |
| A9 | 26.63 | 372 | 0 | 135 |
| A10 | 30 | 364 | 0 | 156 |
>TRINITY_DN44814_c0_g3_i3 from sample A7 / Example spliced isoformTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGTAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAACATAAACAACC
CCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCGTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTCGATTCCGGATG
TGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGAGCGTGATCGTG
CTAAGCTTGAACGAAGGAGGAGGAAGGATGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTTAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAGAGCTCATTAAG
GATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCACTCCAGTGTGTTCTAAACTCTGATGTGGA
GAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGCAGCATCTATTC
TTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGCCGAAAACACTT
ATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTCATTGATAAGTT
CCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATTGTTCAAGAACC
TGAATTTTGGTATAGATCTTGACAGTCGTCTTTCGATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATCCTCTCTTGTAT
ATGATGCGGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACGGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCATCTTGATCTAGA
TGCTGTCGAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTTGCTGCAATATT
TTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCTAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTGTAATATTTCTT
CTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCATTGTGAAGGGA
GACCAAAACCACAACTGGAACAGAAAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTTGAGGAAAGTCTTAGCATGTTCAAAAT
GTTTTTGCTCTGCGTGACCAAGACCTGAAAATGGAGAGTAATCAAGCATTTTTTGAAAGGTGCAATTGGAGTGTATTTGATCACATTTACAACAAAGTGTAACAAGTTGGAGTATGGGCAGTTGGACAAGTTGGTCTATATTTACAGAAACCTTTGCCTTATGAAACATTTGCCACAAGGTATATGGATCAAATAGTAAT
GATAAACATTTTCCAAAATCTGGTTCTCTTGATTATTTGACTTGGTTTGACACATAGATTGACAATCTTTCCTGCACATTGTATTTCAGGCAAATAACACGTTAACATCAGAATTTTGGGTTAAGTAATCGGACTAGAAACAACTAGTTCTACATGTTAGGTGTCCTTATAGATGAGTCATTAGTGAAAACATTGTTTGT
TTTGAATTTTATGTCCTGCTTTATCTGTCAACCTTGAAGGTTTACCCTTCAGGCATACGCATTTGTGACTCACTGCAATTCAAATTTTATATTATCATTATTCATGAGGTGAATTGATGGATAAATTGTCATTTTATCGTTTATGGGCTTGAAATGTTATTATTTTTACTACAC
>TRINITY_DN44814_c0_g3_i4 from sample A7 / Example unspliced isoform:TTCCAAGGAGGGGTTTTAATGgtatgctttgattcttgtagaatatttctctattagcctcttttcttcacatgctaggtttcctcctgaaactttgattttactctatttgcagGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAA
CATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTTGCTGCAATATTTTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCTAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAG
TGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTGTAATATTTCTTCTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCC
TAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCATTGTGAAGGGAGACCAAAACCACAACTGGAACAGAAAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTT
GCAGTGTATCCTTGATTACTAGATTGCTTAACTTGAGGAAAGTCTTAGCATGTTCAAAATGTTTTTGCTCTGCGTGACCAAGATCTGAAAATGGACAGTAATCAAGCATTTTTTAAAAGGTTATTTCCCACTATCCATTCATTATTTCATTTTGTTTATCAACTTAGTAATGTTATATATAGTAGAGCCAAGTGCCTGTA
TTTTCCC
Intron 5 GTATTTTATT ... TTGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 3.88 | 161 | 5 | 8 |
| A2 | 1.5 | 164 | 1 | 4 |
| A3 | 1.81 | 136 | 2 | 3 |
| A4 | 3.27 | 133 | 0 | 9 |
| A5 | 3.51 | 55 | 3 | 1 |
| A6 | 0 | 245 | 0 | 0 |
| A7 | 0 | 369 | 0 | 0 |
| A8 | 0.65 | 307 | 0 | 4 |
| A9 | 0 | 305 | 0 | 0 |
| A10 | 0 | 230 | 0 | 0 |
>TRINITY_DN126959_c9_g4_i1 from sample A1 / Example spliced isoformATTCATTTCATTTTGTCTCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGGAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAA
CATCAACAACCCCAACGATGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCCTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTC
GATTCCGGATGTGTTGACGATGAACCAGAGGCTCGCCTGGTTTGTGGCAAACTGTCAGAAAAAATTGGAAGCCATGGGCAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGA
GCGTGATCGTGCTAAGCTTGAACGAAGGAGGAGGAAGGACGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTCAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAG
AGCTCATTAAGGATGGTTCAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCAGTCCAGTGTGTTCTAAAC
TCTGATGTGGAGAGAACTCAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGC
AGCATCTATTCTTGCAGGACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGC
CGAAAACACTTATTGTTGTCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTC
ATTGATAAGTTCCGTTACAATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATT
GTTCAAGAACCTGAATTTTGGTATAGATCTTGACAGTCGTCTTTCGATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATC
CTCTCTTGTATATGATGCGGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACGGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCAT
CTTGATCTAGATGCTGTCGAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTT
GCTGCAATATTTTATTTGAAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCCAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTG
TAATATTTCTTCTCAGATGATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCA
TTGTGAAGGGAGACCAAAACCACAACTGGAACAGACAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTAGAGGAAAGTCTTAGC
ATGTTCAAAATGTTTTTGCTCTGCGTGACCAAGATCTGAAAATGGACAGTAATCAAGCATTTTTTAAAAGGTTATTTCCCACTATCCATTCATTATTTCATTTTGTTTATCAACTTAGTAATGTTATATATAGTAGAGCCAAGTGCCTGTATTTTCCCCTAACTTTTATAATATAATGGGAGTTATAGACTATGTCAGAG
TAAGATTAATAATGTGACCAACTAAAGATGGCAATTGATTTTAATGACTATAATGTTATAAATAGGTACTTCAATAAATATAAACTGTTTTTAGATGTCGATCTTTGAATCTTGATTCATGCTTGGCACTGTTCCAAACTATACCTTACTGTTGTTTTACAAAGCTTTTCATATCCCTTTTAAATATTGATATATTAACA
TTCTAGAGTTTTGAAGTAGAATATTTGTGAATGGTGGGGCATCGATGGCATCATTTGGGTGATGGAAGTAATGATGGAATTGGAGGCATTTTGGCCATCATATAGAGTAAAAAATTTATCTCAGCCGTCACGGAAAACATATAAAACAGCAAATACGGTTTACAAAATGGTTTAAACCGTCAAATTTGATGGGCAAGGCT
CTTTCCAAATTTCTACCCTGGATGGAAGTGCTTCTAAGTTGAGAATCTTGATACCACAATCATACATAGTAATAAAATCATTATGTGGTTATTAGTTATTACCAAAATTATCAGTCTCCTAGAATGCACGGAGTCTTCCTGAGTCAATAAAAAAGGAGTAATCGCCCAAGTTTCTGCCTAGAAACTTGTGACTTGCCCAA
ATATTAGGAAACTTGCCGAGACTCACCCAGACTCACGAGTTTGACATAAGATTCCCGAGTTAGGAAACTCTGTAGGCTTTTGGGCTTGTATTCAGAACGGAAAAAAAGTAAATATA
>TRINITY_DN126959_c9_g4_i5 from sample A1 / Example unspliced isoform:ACAGTTTTCCGTTCAGCAAAGgtattttatttgtttgtttcatacaatttctatgtaaagatctacatcttgagttgcttcttggtatcggtaaatactagtatcactctcttagatgggttgatgcaattgctttgttttcccaaaacattttccttcacatgagcagttgatcttctatctgtgttggataataatca
atgctagaaggtcgctctaaatcactggtttgggaggcctttttgtacatcttgaagattcaaatatgttaataatagtataatagctaatagtatcataagatcattttcttattgtttctgcatgctgaatcagatattgtgtgggttacaattgtaaattttgaattctaaataagtttgggagaaattattattgt
tgatggccattcatctagataatgatcactggaaacatagcttggatattttttgttttaggaaaaaaatattttcaccattttatttgtgcatagcaatgcatattagcctcagagagagatgttgatgtactttagtcttctatagtaacacaattgaatgatctagcaccgtatattctagacagggataattgaat
aaactgcaagaaattacttaggagaaaaacgatgtatttgtgtgcaatgtttggcagaatgtttttactgctagtcctttctattaaattattgtcagttaaaaatatcaggagacttatttttgttgatattgtgtgcagGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATCC
TCTCTTGTATATGATGCGGTGCTTCCCTGTAAGTTTTGCGATACTTTGTTTTTGACTAATACAAAATTATAGATTCAGCTCAGGTAATACTAAAGGGCTTGGTACCAGAGATAGGTACATGCACCTAACATTTTTTTGACAGAAAATAAATCAGTAATTTTATTCAAAATGGAAACATTACATATCTCAGATGCCTCTTG
GTGTTCATTCAGCCTATGAAGGACATAGTAGGATCTATTACATCATATAGAATCCAAAAAATATGTCCTCTATAGATATATTATCCTTTCAATCATAGAGTTATGATGTCCTATAGATAACTTCTCCAAAATAGAGTTTTCTTTAAACAGTCCTAATCATGGCTTCCTAAGGTAATTTAGTAAAAAGTCC
Intron 6 GTATGCTTCC ... TTGTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.85 | 182.3 | 16.7 | 13.7 |
| A2 | 7.56 | 117.7 | 10 | 10 |
| A3 | 8.58 | 169.8 | 24 | 10.7 |
| A4 | 6.13 | 183.2 | 18.7 | 9.3 |
| A5 | 5.7 | 53 | 2.7 | 4.3 |
| A6 | 5.99 | 123.3 | 10.3 | 8.7 |
| A7 | 6.12 | 181.7 | 19.3 | 9 |
| A8 | 5.91 | 174 | 17 | 9 |
| A9 | 4.93 | 210 | 15.7 | 10 |
| A10 | 5.65 | 135.2 | 11 | 8.3 |
>TRINITY_DN118020_c0_g2_i7 from sample A2 / Example spliced isoformCTCGCACTAAAATCTCCTCTCCTCGTCTCTGTGCAAGAACGTAAAGTAGCAAACAGCAGCAAATATTTGAGAAAAAGGGTAGAGAAGGGGAGATTATTATTTTTGGCGAGGCAGAGGAGAGGCTGCCTTTGCATATAGGTCGATTCATGCCATTTTCGCGCATCTGATCGAAATCGAAATAACATAAACAACCCCAACGA
TGTCGGCGGCGACCAAGGCCGAAGAGAATGCGGGAGGAATCGTGTACGAAGTGCTGGGGCGCAGAGCATTGGATGTAGACACCACCATTATCGAATACATAATAAACGTCCTCAAAGATGAATCCTTCGATTTCGGCGTCAAGGGAGAGGGCGCCTTCCAAGCTGTGGGCGACCTTCTCGTCGATTCCGGATGTGTTGAC
GATGAACCAGAGGCTCGCCTGGTTTGTGGTAAACTGTCAGAAAAAATTGGAAGCCATGGACAAACAAGAAAGAAGGAAGTAGTTCGAAGTCTTACAACCCCTGTTCGGATGTATGATGGATTGTGTCAAGAGGAACCCCCTCCTAAGAAGGCTGAAGTAGAGGATGGTCCTCCTATGTCTGAGCGTGATCGTGCTAAGCT
TGAACGAAGGAGGAGGAAGGATGAACGCCAAAGAGAGGTAGCATATGAGTTACACTTGGAAGAAATGAAAGCATCTTTGGCAGGAATGCCTGTAGCACATGTTCATCATGGGAATGGGGATGAGGGATCAACAGTTAAGGACATTCACATGACAAATTTCAATATTTCTGTTGGAGGTCGAGAGCTCATTAAGGATGGTT
CAATTACTTTGTCATATGGCAGGCACTATGGTCTGATTGGAAGGAATGGTACAGGGAAAACAACACTACTCAGGCATATGGCTCTGCATGCAATTGATGGTATTCCCAAGAACTGCCAAATTTTACATGTAGAGCAAGAGGTAGTTGGTGATGGTACTTCTGCAGTCCAGTGTGTTCTAAACTCTGATGTGGAGAGAACT
CAACTCTTGGAGGAAGAAGCTAGATTAGTGGCACAGCAGAGAGATGTGGACAAGGATGTTGCAGCTGGAAAGGGTGATCTGAAGCTCAATGGAGCCACCGAGGATAAGGATACGTCTGAGAGGCTTCAAGAGATATATAAAAGGCTTGAATATATTGATGCTGATTCTGCAGAGTCTCGTGCAGCATCTATTCTTGCAGG
ACTCAGTTTCACCCCAGATATGCAACTAAAACCAACAAAAGCATTTTCTGGAGGGTGGCGTATGAGGATTGCTCTTGCACGTGCTCTTTTTATAGAGCCCGACTTGCTTTTACTTGATGAACCCACTAATCACCTTGATCTTCATGCAGTTCTATGGCTGGAATCGTATCTTTTGAAATGGCCGAAAACACTTATTGTTG
TCTCCCATGCTAGAGAATTCTTGAACACGGTGGTTACAGATATTTTGCATTTACATGGGCAAAAGCTAATAAGTTACAAGGGTGACTATGATACATTTGAGAGAACTCGAGATGAGCAACTCCGCAATCAACAAAAGGCTTTTGAGTCAAATGAACGCACAAAGGCTCATATGCAGGCTTTCATTGATAAGTTCCGTTAC
AATGCAAAAAGAGCTTCGCTTGTTCAGTCAAGAATCAAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGACTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGTGATGCATCATTTGGATACCCAGGGGGACCTCTATTGTTCAAGAACCTGAATTT
TGGTATAGATCTTGACAGTCGTCTTTCAATGGTTGGTCCAAACGGTATTGGTAAGTCAACTTTGCTAAAGTTAATTTCAGGGGAACTACAGCCAAGCTCTGGTACAGTTTTCCGTTCAGCAAAGGTTCGCATGGCTGTTTTTAGTCAGCACCATGTTGATGGGCTTGACTTGTCATCTAATCCTCTCTTGTATATGATGC
GGTGCTTCCCTGGTGTCTTGGAACAAAAGCTAAGGGCACATTTAGGGTCGTTTGGCATCACAGGGAACCTTGCACTTCAACCCATGTATACATTGTCAGGTGGTCAGAAAAGTCGGGTAGCTTTTGCGAAAATTACCTTCAATAAACCTCATATTCTTCTTTTGGATGAGCCTTCAAACCATCTTGATCTAGATGCTGTC
GAGGCACTTATTCAAGGACTCATTCTCTTCCAAGGAGGGGTTTTAATGGTTAGTCACGATGAACATCTAATTTCTGGAAGTGTTGATCAATTATGGGTGGTATCTGAAGGAAGAGCAACACCTTTTAACGGAACATTTCAGGATTATAAAAGGACCCTCAGGGCAGCCTAGTGAAAGGCTTTGCTGCAATATTTTATTTG
AAAATATTTCGGCCATCATGTCAAGCAGATCACGTGCATAAATTCTACACAGCTCGCAATTCAGATACAAAGCCCTAAGGGAAAGGGAAACACACTTATCTAAGCAATTAGATTCATTATTTTCATTCTTCAGTGTGATTGTTTCCAAAGTTTTATCTATTGTCTTCTTTTTATATTATGTGTAATATTTCTTCTCAGAT
GATAATATTGCTTACCAGCATCCTATTGGTTTTTCAATCTTTAGGAGATTATTGATGACTTACAAGTCAGCTCCAGTAAAGATGGACTTAGATCTATAGATAACTAATAAAAACATTAGGCAGTTCAAATGCCTAAATTTTAGTTTGAAGGTAAAATTTATTGCCTTCATGGTTATCACCCATTGTGAAGGGAGACCAAA
ACCACAACTGGAACAGAAAGTGGATGTAGCTGTAGAACTAAAGTATTGAAAAGTAGGGTGAAGGTTAGAACTGAGAGTATGTAGTATTTGGATGAATCATATTACAACATATATGCCAATCAGTGGATGCCTTGCAGTGTATCCTTGATTACTAGATTGCTTAACTAGAGGAAAGTCTTAGCATGTTCAAAATGTTTTTG
CTCTGCGTGACCAAGACCTGAAAATGGAGAGTAATCAAGCATTTTTTGAAAGGTTATTTCCCACTATCCATTCATTATTTCATTTTGTTTATCAACTTAGTAATGTTATATATAGTAGAGCCAAGTGCCTGTATTTTCCCCTAACTTTTATAATATAATGGGAGTTATAGACTATGTCAGAGTAAGATTAATAATGTGAC
CAACTAAAGATGGCAATTTATTTTAATGACTATAATGTTATAAATAGGTACTTCAATAAATATAAACTGTTTTTAGATGACGATCTTTGAATCTTGATTCATGCTTGGCACTGTTCCAAACTATACCTTACTGTTGTTTTACAAAGCTTTTCATATCCCTTTTAAATATTGATATATTAACATTCTAGAGTTTTGAAGTA
GAATATTTGTGAATGGTGGGGCATCGATGG
>TRINITY_DN118020_c0_g2_i5 from sample A2 / Example unspliced isoform:AATCAAGCCATTCTTGGTGATTGTTGGTAGAATTTGTTTGGTCAGTATTTACCCAAGTGATAAATTTATGAACTTTGAGGTCATCTTTGTTGATGGTTTTAGGCTTTGGATCGCGTTGGTCATATGGATGCTGTTGTCAATGATCCAGAgtatgcttccattcagtgttactagtattttttccttttgtatatctcctt
ttttgttgcctgttgctgttttggcctatactcttgtatatcccggtgaaaatattttcatctgccatcttatgtaaacttattcataagttgtactacttgtgtgcagCTATAAATTTGAGTTTCCGACTCCTGAAGATAGACCAAGTGCTCCAATTATCAGTTTCAGGTTTGATATTTGACTGTTTGGGCATCGTTTT
TAAAATTTCAAGATAATTTTTCCTTATTACTCTACATTCGTCTGGACATTTTGCTCTTGGGATGTAACTGAAATCGTAATATTTTGACTGGTCATAGTTACATGGAATGACTTCTAGTAATTTTAGATCCATTGGCCTTAAAATCTCCATGTTCCTTGTGTTTCTCAACCCTTTTTTGCTTCTTTGGGAGCATACCTGAC
ATGCAATGAGTGTAGAATACTGGTCTACACTCTACGAGTCTACAGCTATGCTGTTGGGAACGCGGAGCGGAGCGAAAAGTGAAATTTCAAAAGCTCCCGTTTTGGGAGCGTTTCAGGAGCG