sp|Q8RWQ4|RGAP7_ARATH ----> Rho GTPase-activating protein 7
Intron 1 GTTTTTAAGA ... TCGTCCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.05 | 133 | 256 | 239 |
| A2 | 67.31 | 110 | 222 | 231 |
| A3 | 70.34 | 126.9 | 305.9 | 296 |
| A4 | 61.36 | 165 | 273 | 251 |
| A5 | 63.56 | 125 | 228 | 208 |
| A6 | 67.2 | 51 | 105 | 104 |
| A7 | 66.36 | 148 | 299 | 285 |
| A8 | 64.98 | 38 | 72 | 69 |
| A9 | 67.22 | 119 | 245 | 243 |
| A10 | 66.23 | 130 | 259 | 251 |
>TRINITY_DN111590_c0_g2_i9 from sample A2 / Example spliced isoformAACCTTCTTTCTTTGACCCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCAC
CCAACGCTACCATAGAATACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTGGATCCAGGATAATTTAATCTAATCATTAATG
GCCGCAGCTGCTCTGTGCATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAA
TGTTGATGTTGTGTGAGAAGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAGAAGTGAATTTGACTCTGGG
TGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATG
GTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAG
GCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGAT
TGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTG
ACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTG
CAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACT
CAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCA
GTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAAT
GCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCT
AGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGC
ATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATGGAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCAT
AATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACACGGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTAC
ATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCAGACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGA
AAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTTCATGTATTCATAAGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGT
GATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTGTGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCAT
TTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAATATATTTTCTCATATACTACAACATATGTATTTATTTTCTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCC
>TRINITY_DN111590_c0_g2_i7 from sample A2 / Example unspliced isoform:AACCTTCTTTCTTTGACCCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCAC
CCAACGCTACCATAGAATACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTGGATCCAGGATAATTTAATCTAATCATTAATG
GCCGCAGCTGCTCTGTGCATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAA
TGTTGATGTTGTGTGAGAAGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGgtttttaagagtggaccgcttttcatatcgtccaaagGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTC
TTCCTCAGAAAGGTGGAGAAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCT
CAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGTAAGGCTTATTTGATTCATGTAACTTTAGAAGCTTCTGCAAATCTTTTTGCTTACCTCTTATCTTGTTTACTAAAAAGTATGCATCTATTGGAGTATTGGCGTGTACTATT
TTAATCTTTTGATCTAATGCTGCAACCTTTTTGTATACTAGTATAGCATTAATCATTATACCATAAGGACAGAGGTAATTGGTACGAGGAGGAAACATCTGTGCTTCTCCAAGTCTTTCATTGTTTATAATTAAGGAACATCTTATGCAATCTAGCAATTGGATTTTCCACAGTCTGTCTTTATCATTCATGGATTAATG
GCTATTTTGGTTTCAATAATATACTTTCATCTTTTTTTAATATTATATAAAAATTATAATTAATAAAACAGTGATCATCCATACAAGCATGTGAGAAATGTCAAAGTGTTGTGGAGATTTACTCTTCACATTGTATTTGTCTGTTATGCAGGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCT
GCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTA
TCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACT
TCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACAT
ATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCA
GTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGT
TCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGA
GCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAG
CTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCT
CTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGCATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATG
GAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCATAATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACAC
GGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTACATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCA
GACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGAAAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTTCATGTATTCATA
AGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGTGATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTG
TGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCATTTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAATATATTTTCTCATATACTACAACATATGTATTTATTTT
CTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCC
Intron 2 GTTGGCTCTT ... ATAAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.74 | 232 | 45.5 | 36 |
| A2 | 15.66 | 179.9 | 20.1 | 47 |
| A3 | 15.04 | 179 | 25.9 | 38 |
| A4 | 12.41 | 130 | 15.7 | 22 |
| A5 | 10.07 | 62 | 1.9 | 12 |
| A6 | 15.61 | 216.1 | 34.5 | 46 |
| A7 | 15.15 | 382 | 53.8 | 84 |
| A8 | 13.17 | 284 | 38.3 | 49 |
| A9 | 13.21 | 304.1 | 43 | 51 |
| A10 | 15.62 | 207.2 | 26.2 | 51 |
>TRINITY_DN127351_c3_g1_i12 from sample A1 / Example spliced isoformCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCACCCAACGCTACCATAGAAT
ACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTCGATCCAGGATAATTTAATCTAATCATTAATGGCCGCAGCTGCTCTGTGC
ATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAATGTTGATGTTGTGTGAGA
AGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAAGAGTGGACCGCTTTTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAG
AAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCC
CTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGT
AGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGG
AACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGT
GAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATC
AAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGG
AAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGC
CCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGC
TAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATT
CGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGTAAGATCTTGGTTTGCTTTCAGTTATC
TGTAACTTTGTACTTATTAAAATGACTTTGAGGTGTTTGATTTTGATGTTATATTCTAAACTTGACATTTTTTTATTTGTTCTTTCTGTTGTTGCTGATATAATGCCTGGGAAGGAGGGAGATAATTAATGGGTGGATGAACTTTGAACGAAAAAGCTGCTCTCTTTTGGAACACTAAAAGAACAGATGAACACTACAGT
TCAACACTAAAAATACCTACAGCCCAGACTTATTTTTACATTCACCCATATGGACTATGTGCC
>TRINITY_DN127351_c3_g1_i13 from sample A1 / Example unspliced isoform:TGGAATCTGGCAACTCATTTTGTTTCAACTGGAGATTATGCTGCTATTTTACTGCTAAAGTTTCACCTAGTTTTGTGGCTTACCTGTCTTTCATTAAAATTCAAATTTTCCCTTCATACTTTGGGTTCTTTCTCTATTTTGAGCCTAAACTGGTCATCGTGAGAGACAATAGAGCAATTGACTATTTGATGGTTTATTAC
TGTAGGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGgttggctcttgactttgatgttttagatattagcataatgttttagatattagcaatataaatcaatgttaaaatcttcag
ccacaattcatgcatttggaaggataaatgttaaaagtttgttatgataaattcagACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCAT
GTCAAGAGTCTTCAAGCACAGCAGTAAGATCTTGGTTTGCTTTCAGTTATCTGTAACTTTGTACTTATTAAAATGACTTTGAGGTGTTTGATTTTGATGTTATATTCTAAACTTGACATTTTTTTATTTGTTCTTTCTGTTGTTGCTGATATAATGCCTGGGAAGGAGGGAGATAATTAATGGGTGGATGAACTTTGAAC
GAAAAAGCTGCTCTCTTTTGGAACACTAAAAGAACAGATGAACACTACAGTTCAACACTAAAAATACCTACAGCCCAGACTTATTTTTACATTCACCCATATGGACTATGTGCC
Intron 3 GTAAGCTGGC ... CTTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.15 | 203 | 45 | 2 |
| A2 | 13.71 | 151 | 24 | 5 |
| A3 | 19.21 | 164 | 39 | 10 |
| A4 | 15.22 | 117 | 21 | 1 |
| A5 | 13.11 | 53 | 8 | 4 |
| A6 | 12.2 | 144 | 20 | 4 |
| A7 | 14.07 | 336 | 55 | 11 |
| A8 | 12.31 | 228 | 32 | 6 |
| A9 | 15.55 | 315 | 58 | 15 |
| A10 | 14.86 | 298 | 52 | 20 |
>TRINITY_DN127351_c3_g1_i12 from sample A1 / Example spliced isoformCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCACCCAACGCTACCATAGAAT
ACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTCGATCCAGGATAATTTAATCTAATCATTAATGGCCGCAGCTGCTCTGTGC
ATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAATGTTGATGTTGTGTGAGA
AGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAAGAGTGGACCGCTTTTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAG
AAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCC
CTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGT
AGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGG
AACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGT
GAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATC
AAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGG
AAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGC
CCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGC
TAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATT
CGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGTAAGATCTTGGTTTGCTTTCAGTTATC
TGTAACTTTGTACTTATTAAAATGACTTTGAGGTGTTTGATTTTGATGTTATATTCTAAACTTGACATTTTTTTATTTGTTCTTTCTGTTGTTGCTGATATAATGCCTGGGAAGGAGGGAGATAATTAATGGGTGGATGAACTTTGAACGAAAAAGCTGCTCTCTTTTGGAACACTAAAAGAACAGATGAACACTACAGT
TCAACACTAAAAATACCTACAGCCCAGACTTATTTTTACATTCACCCATATGGACTATGTGCC
>TRINITY_DN127351_c3_g1_i30 from sample A1 / Example unspliced isoform:AGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGC
AATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCT
TAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTgtaagctggctttagttcttatttagagaga
ggtttgtttgatgagagtttgggtaattagtactaatttgttagtatgaaatgctatgatgttgacaatggcttcagctatgatatgtgattctgctactttttgcagGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTT
ACGCAACAAGATTGCTAAGGAGG
Intron 4 GTAAGGCTTA ... TGTTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.13 | 180 | 82 | 52 |
| A2 | 25.49 | 133 | 58 | 33 |
| A3 | 25.61 | 183 | 61 | 65 |
| A4 | 26.43 | 103 | 39 | 35 |
| A5 | 22.94 | 84 | 25 | 25 |
| A6 | 23.81 | 72 | 26 | 19 |
| A7 | 22.84 | 152 | 52 | 38 |
| A8 | 24.75 | 76 | 22 | 28 |
| A9 | 24.55 | 146 | 53 | 42 |
| A10 | 22.02 | 170 | 62 | 34 |
>TRINITY_DN111590_c0_g2_i9 from sample A2 / Example spliced isoformAACCTTCTTTCTTTGACCCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCAC
CCAACGCTACCATAGAATACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTGGATCCAGGATAATTTAATCTAATCATTAATG
GCCGCAGCTGCTCTGTGCATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAA
TGTTGATGTTGTGTGAGAAGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAGAAGTGAATTTGACTCTGGG
TGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATG
GTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAG
GCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGAT
TGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTG
ACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTG
CAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACT
CAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCA
GTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAAT
GCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCT
AGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGC
ATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATGGAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCAT
AATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACACGGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTAC
ATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCAGACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGA
AAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTTCATGTATTCATAAGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGT
GATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTGTGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCAT
TTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAATATATTTTCTCATATACTACAACATATGTATTTATTTTCTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCC
>TRINITY_DN111590_c0_g2_i7 from sample A2 / Example unspliced isoform:AACCTTCTTTCTTTGACCCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCAC
CCAACGCTACCATAGAATACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTGGATCCAGGATAATTTAATCTAATCATTAATG
GCCGCAGCTGCTCTGTGCATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAA
TGTTGATGTTGTGTGAGAAGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAAGAGTGGACCGCTTTTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTC
TTCCTCAGAAAGGTGGAGAAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCT
CAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATgtaaggcttatttgattcatgtaactttagaagcttctgcaaatctttttgcttacctcttatcttgtttactaaaaagtatgcatctattggagtattggcgtgtactatt
ttaatcttttgatctaatgctgcaacctttttgtatactagtatagcattaatcattataccataaggacagaggtaattggtacgaggaggaaacatctgtgcttctccaagtctttcattgtttataattaaggaacatcttatgcaatctagcaattggattttccacagtctgtctttatcattcatggattaatg
gctattttggtttcaataatatactttcatctttttttaatattatataaaaattataattaataaaacagtgatcatccatacaagcatgtgagaaatgtcaaagtgttgtggagatttactcttcacattgtatttgtctgttatgcagGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCT
GCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTA
TCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACT
TCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACAT
ATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCA
GTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGT
TCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGA
GCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAG
CTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCT
CTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGCATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATG
GAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCATAATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACAC
GGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTACATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCA
GACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGAAAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTTCATGTATTCATA
AGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGTGATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTG
TGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCATTTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAATATATTTTCTCATATACTACAACATATGTATTTATTTT
CTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCC
Intron 5 GTTTGCGTTT ... TGCCTAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.58 | 162 | 3 | 50 |
| A2 | 19.4 | 162 | 4 | 39 |
| A3 | 27.44 | 156 | 0 | 59 |
| A4 | 26.4 | 92 | 0 | 33 |
| A5 | 28.24 | 61 | 3 | 24 |
| A6 | 28.23 | 300 | 0 | 118 |
| A7 | 25.45 | 457 | 5 | 156 |
| A8 | 24.09 | 561 | 1 | 178 |
| A9 | 22.41 | 412 | 0 | 119 |
| A10 | 23.06 | 307 | 1 | 92 |
>TRINITY_DN44899_c2_g4_i3 from sample A8 / Example spliced isoformCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCACCCAACGCTACCATAGAATACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACT
TCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTGGATCCAGGATAATTTAATCTAATCATTAATGGCCGCAGCTGCTCTGTGCATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACG
TGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAATGTTGATGTTGTGTGAGAAGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAAGAGTGGACCGCTT
TTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAGAAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGT
ACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGAC
GGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTT
TCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAG
GGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGG
CGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGAC
CCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACAC
GTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGA
ATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTT
GAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCA
TGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGCATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCAC
CAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATGGAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCATAATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAA
CCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACACGGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTACATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTT
GGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCAGACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGAAAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCC
TTGGAAGCAGTTTATAGATTATTTTCATGTATTCATAAGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGTGATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATAT
GACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTGTGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCATTTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAAT
ATATTTTCTCATATACTACAACATATGTATTTATTTTCTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCCAAACAGTAGACTGCCTGGATAATGACTACCATCCGCAGGCATGAGAACCAATTGGTAACCATCCTGGATATCGACATACCACCATAATGGAGAGTA
CAGAAATGGACCTCTAAGACTTTTATTCCATGATTCTTGGTTGAAATCCTTGCGTCAATGATGTTTTGGCATTGTCCGCAGTGTATTGTTTGGAGCTGAGTACAATTTTATGCCGTCATTGCATGGGCTTTATGTTTTGGTCACTTTTTTGTGACTTCGGGCCTGTTTTCTTTGTATGAATAAAATAAAAAGGAAGGCAT
TTTTTTTTATGGCAGATCAGCTTCTGACAGTAAAGATGGTGTATTTCAGAATTTTGTAATGAGCTAACTAACATAATATACCTCTAGATAGGTTCGAGGACGATTCACTGTGATGATTGCCTTATACATCACAGTCATTGGGCACTTGACAGTGAGTTACCTCTGAGATTTTTGCAAGACAGGAACATTAACCTGTCAAA
TACTTAATACAAAGTTGTGCCACTACCTTATATGAAAAGTTGCACTGGGGTTTACACTGTCCTTTTAATGATGTAAGTATATTGGCATGCCCAATAATTCTATATCCAATTGACTAATATGCTTTCAATGTTACGGGCTTTCACTGATTCTCACAGATAACTGATACAGGACTATAACAAAATTCCAAACATGCATTTTT
GTCGACAATTGTGTCAATAAATTTATTAAAGATTTGCCAAAGAATGTATAATACAGTTCCTGCACCGAGTCTAACACCATTCGGAAGTCCAGTTGATTGTCTATTGTAGTTAGCCTGTATTGTACTCGAATGGTTTCTATTATTGTGATTTGCATTGGAGCAATTCTTGAGAAAGGGAACTATGATTGGCACTGAATGGG
TTCTACTATTGTGGTTGATTCTTGAATGTGTCTTGTTAAGGCTATTTCTTGTCGTGACATATTTATGAAATCATGGACTATGTTGGGCTCGTGATATATAGTAATATAAAT
>TRINITY_DN44899_c2_g4_i4 from sample A8 / Example unspliced isoform:TGAAAAACAAAAGATCGATGAGgtttgcgttttgattaattattaatcttaattatgttaattgaataaaaaaatttgatgctaattgaaacattagttactttcttagatgctttctagatttcataattatttctcaactatagagccccaagttggacgtaactggcaagctgactatatttttatgaaatttatgc
tctttttcggcttgcctagaactcctcggaaagtaatattgtccacaatatgcgttctgctttacatttttctgttcagaacatgaaagtatgtctgtttgtcagtggcttttacagaagacattttattttccaatatttgattaatttggaaatagatataactttgtgcattttcacttgaaatgattattcaattc
tttgtattctgttgcctagcagGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATGGAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCATA
ATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACACGGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTACA
TCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCAGACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGAA
AAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTTCATGTATTCATAAGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGTG
ATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTGTGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCATT
TCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAATATATTTTCTCATATACTACAACATATGTATTTATTTTCTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCCAAACAGTAGACTGCCTGGATAATGACTACCATCC
GCAGGCATGAGAACCAATTGGTAACCATCCTGGATATCGACATACCACCATAATGGAGAGTACAGAAATGGACCTCTAAGACTTTTATTCCATGATTCTTGGTTGAAATCCTTGCGTCAATGATGTTTTGGCATTGTCCGCAGTGTATTGTTTGGAGCTGAGTACAATTTTATGCCGTCATTGCATGGGCTTTATGTTTT
GGTCACTTTTTTGTGACTTCGGGCCTGTTTTCTTTGTATGAATAAAATAAAAAGGAAGGCATTTTTTTTTATGGCAGATCAGCTTCTGACAGTAAAGATGGTGTATTTCAGAATTTTGTAATGAGCTAACTAACATAATATACCTCTAGATAGGTTCGAGGACGATTCACTGTGATGATTGCCTTATACATCACAGTCAT
TGGGCACTTGACAGTGAGTTACCTCTGAGATTTTTGCAAGACAGGAACATTAACCTGTCAAATACTTAATACAAAGTTGTGCCACTACCTTATATGAAAAGTTGCACTGGGGTTTACACTGTCCTTTTAATGATGTAAGTATATTGGCATGCCCAATAATTCTATATCCAATTGACTAATATGCTTTCAATGTTACGGGC
TTTCACTGATTCTCACAGATAACTGATACAGGACTATAACAAAATTCCAAACATGCATTTTTGTCGACAATTGTGTCAATAAATTTATTAAAGATTTGCCAAAGAATGTATAATACAGTTCCTGCACCGAGTCTAACACCATTCGGAAGTCCAGTTGATTGTCTATTGTAGTTAGCCTGTATTGTACTCGAATGGTTTCT
ATTATTGTGATTTGCATTGGAGCAATTCTTGAGAAAGGGAACTATGATTGGCACTGAATGGGTTCTACTATTGTGGTTGATTCTTGAATGTGTCTTGTTAAGGCTATTTCTTGTCGTGACATATTTATGAAATCATGGACTATGTTGGGCTCGTGATATATAGTAATATAAAT
Intron 6 GTTGGAACAT ... TGTTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.12 | 258 | 6 | 61 |
| A2 | 24.82 | 212 | 3 | 70 |
| A3 | 21.8 | 330 | 5 | 92 |
| A4 | 24.91 | 211 | 8 | 70 |
| A5 | 25.57 | 131 | 2 | 45 |
| A6 | 20.16 | 103 | 0 | 26 |
| A7 | 23.63 | 278 | 0 | 86 |
| A8 | 20.28 | 114 | 0 | 29 |
| A9 | 21.69 | 231 | 0 | 64 |
| A10 | 21.05 | 270 | 0 | 72 |
>TRINITY_DN102624_c0_g1_i1 from sample A4 / Example spliced isoformGGGGAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCACCCAACGCTACCATAGAATACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCT
GTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTGGATCCAGGATAATTTAATCTAATCATTAATGGCCGCAGCTGCTCTGTGCATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGA
ACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAATGTTGATGTTGTGTGAGAAGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAA
GAGTGGACCGCTTTTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAGAAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGA
AACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAA
TGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGG
ACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTC
GATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCT
AATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGA
GCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAG
AACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGC
CCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACG
CCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGG
TTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGCATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCA
ACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAGACAAATCCCATGGAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCATAATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTAC
ATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTGAGTTAACTACACGGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTACATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGG
CAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTATGTGTATATGCAGACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGAAAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAG
TTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTTCATGTATTCATAAGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGTGATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATT
TCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGTTTATTAAATTTGTGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCATTTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAAT
TGTAATAATAAATATATTTTCT
>TRINITY_DN102624_c0_g1_i4 from sample A4 / Example unspliced isoform:CCTTTTCTTTGCTTAATTCCTTTTCCAGTTTGAGTCCTATAATTGACATGTGGCTGATCTTTCAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGgttggaacatatctcttttaagatggaagaatgttattaaggaaatttcatgttatattgctttgctgctaattgtcat
atcatgatcttttatggatgggagtgttggatcctatggtttggaggttttgctgccagtttatgtacttgattcattctgttggaagttcatggtaattgctttgtgtgttttgcagCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTA
AGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGTATTTAGTTCATTAGCTCAAAATATTGTGGTAAATCACCCTTGATAATATATGCAATAAAAGGTTTTAATTAGGCATGTTGGAAGGCATTTTCATATATATTTATAAAGTTAGTATCCTAGTA
ATAGATATATTCTAATTCAT
Intron 7 GTAGCACTTC ... TTTCTATCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.07 | 185 | 4 | 14 |
| A2 | 5.25 | 157.3 | 9 | 7 |
| A3 | 0.68 | 161 | 1 | 1 |
| A4 | 5.06 | 94.4 | 0 | 9 |
| A5 | 4.14 | 62.6 | 2 | 3 |
| A6 | 0 | 153 | 0 | 0 |
| A7 | 0 | 307.6 | 0 | 0 |
| A8 | 0 | 225.7 | 0 | 0 |
| A9 | 0 | 302.4 | 0 | 0 |
| A10 | 0 | 263.8 | 0 | 0 |
>TRINITY_DN127351_c3_g1_i12 from sample A1 / Example spliced isoformCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCACCCAACGCTACCATAGAAT
ACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTCGATCCAGGATAATTTAATCTAATCATTAATGGCCGCAGCTGCTCTGTGC
ATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAATGTTGATGTTGTGTGAGA
AGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAAGAGTGGACCGCTTTTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAG
AAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCC
CTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGT
AGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGG
AACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGT
GAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATC
AAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGG
AAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGC
CCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGC
TAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATT
CGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGTAAGATCTTGGTTTGCTTTCAGTTATC
TGTAACTTTGTACTTATTAAAATGACTTTGAGGTGTTTGATTTTGATGTTATATTCTAAACTTGACATTTTTTTATTTGTTCTTTCTGTTGTTGCTGATATAATGCCTGGGAAGGAGGGAGATAATTAATGGGTGGATGAACTTTGAACGAAAAAGCTGCTCTCTTTTGGAACACTAAAAGAACAGATGAACACTACAGT
TCAACACTAAAAATACCTACAGCCCAGACTTATTTTTACATTCACCCATATGGACTATGTGCC
>TRINITY_DN127351_c3_g1_i18 from sample A1 / Example unspliced isoform:TTTTATTGTAGGGGGTTGTTGGAGGTTAGCCTTGATGGTTGTTCCAATGGGGAAGGTGACAAATGGCATCTTTCTTGGGGCTTTTTGCATGGAAGAGGGGACGTGGTTATTGCAGAAATTGAACACATAAAGAAACCAAGATTAGATAATTGGATGGAAGCTTGTTGTTTTGCTATTTGCTACTGCTTTTAACAACAAAA
GGCATTTTTATAGTAATCTTGGATGACCAAAAGCAGTCAATGTGGGGTGCAAAGAAGCTCCCTCCTATGTCTGGTTATTAAAATCAACCACAGTTATAATCTGTTGTCGTAGAATAATTGCAGAAGAATGAACGTATAGCTTTAGTGGATGGGAAGATGGATTTGTGGGGATGGCTGTTGATGCAAACCCCTACCAGGAT
CCATTATAAGTGTAGAAATTGTTGGTCTGTGTATTCAAACAGTTCCATTAAAGGCAATATGAGCCTTAAATCCCAAGGGGAGTATGGTTCATTATGGTTCTTTTTCATAATAATGTATTGATTCCAGGTCTAGGATTTCTCTATTGTTAAGTATGTAGTTATTATCAAGGATTGGTCCCTATGTTTAAGTTGATAATATC
GTTTCATCAAGTTAGAGAAATTGTGATGTTAAAAGTCAGTACCAAGTTTTGTGTATTGTGGCCAAAATTGGGGATATGGCAATAAGAGCTACTAGATGTTCAATATTGTGCAAGGAGAGTTTCCGAATATTAATATTTTTCTTGCACCCTGGCTAGAGTAGATCGACTGTTCATCTTAATTTGAAGTTATATTATTTTGG
GTATGAAACTTGCAACTTAGCTTTCTCTTTTTCTGATGCCATAGGTAGTCTTAATGGTTGCAACTTGTTAGATTGATTTCTCAATGTAGACACAGTCATACAAAAGGATCTAATCAGTGTTGTTTGTCTCCAGACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGgtagca
cttcttcttaagggcctttgtatcaactgccattcatgaataatttagtgctcctgtatctgggattctataattttttatctttgcatatttaaatctgctatcgttggaattatgtttctatcagGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCAC
TTGAGCAAGATGTATGGACGGGTTCTCTTCTTTTCCAGTATTAAGTTGTTTTCTAATGTATTCAAATCAGGCGTGTTTGGAAAATGGAAAATGACAGATCAGAATGGGGAAAACCTTTGATTCATGAAAAGTAAAGATCAAAGAACAATGTATAAGAAAACACTAATACATCTATGTTCTTGCAATATATAATACATTGT
GCTACAAAAAGCACTGTGCTCTGTTAAAATGAAAAACATAGTGTACAAGGGG
Intron 8 GTAGACCAAG ... AAATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.1 | 278.2 | 4.2 | 103 |
| A2 | 30.46 | 233.9 | 2 | 102 |
| A3 | 28.31 | 322.7 | 6.4 | 127 |
| A4 | 24.39 | 189.9 | 1.4 | 61 |
| A5 | 25.18 | 146.4 | 4.4 | 49 |
| A6 | 29.2 | 99.6 | 0 | 41 |
| A7 | 31.35 | 276.8 | 0 | 126 |
| A8 | 24.95 | 105.9 | 0 | 35 |
| A9 | 29.28 | 249.8 | 0 | 103 |
| A10 | 24.6 | 320.7 | 0 | 104 |
>TRINITY_DN127351_c3_g1_i12 from sample A1 / Example spliced isoformCCAAGGTTGACCTGCGGACGTGGCAGCCAGTGGGGTTCCAACTTTCATCTTCTCTCCCCTGCCTCGCTGCGGCAATCTTCATCTTCGTTCTGTGTCGTAAAATTCTTCTCCGGGCAGAATTGGTATTATTATTTTTATCTGGTCATTCTTCTTCTTCCTTCTTCTGATAACTTACTGCGCACCCAACGCTACCATAGAAT
ACAAGAAGAAACCCTCCGGCAGGGAAACGCACAGTAGTGGAAGCAACGAAACGGAACGAAACCCTACCTGTTAGTGGTGACTTCTGTTTGCTGCTTCTTCACGCCGGGCCTGCTCGCGATCTGAACCAGAGGTGGAGGTCCCGCTCGTTTCGATCCAGGATAATTTAATCTAATCATTAATGGCCGCAGCTGCTCTGTGC
ATTTGATCCAGACTCTTGTTCAAGACTTCTGTGATGCTTCCGAGGGATGCGGAGCTCTGCGCGATTCGAACCGGAGACGACGTGCAGGTTAAGGTTTCGGTTGCGGAGTTCTTCTACTTGTTGTCGTTGTTTTTTATCGGTCGGGAGCAGAGAAAGACAACGGGGAACAGCGGGGACTTGAATGTTGATGTTGTGTGAGA
AGATAAAATGTCTACTCCGGTTACGCCATACGAGCGTCCGCGGAGCAGGGTTGCGAATACGGTTTTTAAGAGTGGACCGCTTTTCATATCGTCCAAAGGGCTAGGGTGGAAATCTTGGAAAAAACGCTGGTTTATCCTTACCCGAACATCTTTGGTCTTCTTCAAGAATGATCCTAGTGCTCTTCCTCAGAAAGGTGGAG
AAGTGAATTTGACTCTGGGTGGGATTGACCTTAATAACTCAGGAAGTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGGCGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCC
CTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGGTAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGT
AGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTGTGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGG
AACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTAGCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGT
GAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGAGTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATC
AAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTCTCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGG
AAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAATCATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGC
CCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAATCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGC
TAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAGAACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATT
CGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAACACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGTAAGATCTTGGTTTGCTTTCAGTTATC
TGTAACTTTGTACTTATTAAAATGACTTTGAGGTGTTTGATTTTGATGTTATATTCTAAACTTGACATTTTTTTATTTGTTCTTTCTGTTGTTGCTGATATAATGCCTGGGAAGGAGGGAGATAATTAATGGGTGGATGAACTTTGAACGAAAAAGCTGCTCTCTTTTGGAACACTAAAAGAACAGATGAACACTACAGT
TCAACACTAAAAATACCTACAGCCCAGACTTATTTTTACATTCACCCATATGGACTATGTGCC
>TRINITY_DN127351_c3_g1_i7 from sample A1 / Example unspliced isoform:ATTGACCTTAATAACTCAGGAAGgtagaccaagaggaattttgtgacattaacttttttttctgtcttatctcttttcatttttcccgacttcgagttgtaaagttcttagttcatgtttgaacatataaaatgtgcagTGTGGTTGTTCGGGCAGATAAGAAACTATTGACAGTACTTTTCCCAGATGGTCGTGATGGG
CGTGCCTTCACACTTAAGGCAGAAACTTTAGAAGATTTGTTTGAATGGAAGGCGGCACTAGAGCATGCTTTGGCTCAAGCACCCAATGCAGCCCTTGTTATGGGTCAGAATGGTATATTTCGAAATGATTCAGTTGATGCCATTGAAGGGTCGACAGAACAATGGAGAGACAGACGGCCAGTGAAGTCTTTAGTTGTGGG
TAGGCCAATCCTGCTTGCATTGGAAGATATTGATGGAAGTCCATCCTTCTTGGAGAAGGCTCTCTGCTTCATTGAACAATATGGAGTCAAAGTAGAAGGTATTTTGCGGCAGGCTGCAGATGTTGACGAAGTTGATCGTCGAGTTCGTGAATATGAGCAAGGACGGAATCAATTTTCACCTGATGAAGATGCACATGTTG
TGGGTGATTGTATCAAGCACGTGCTGAGGGAGCTACCATCCTCACCAGTTCCAGCTCCATGTTGTACTGCACTTTTAGAAGCACATAGAATGGAACGTAAGGAGGCTAGGATTGCTGCAATGCGCTTGGCTGTAGCTGAGACGTTTCCAGAACCAAATCGTCGATTGTTGCAAAGGGTGCTTAAGATGATGCATGCTGTA
GCATCACATACTTCAGAGAATCGGATGACTTCATCAGCAGTTGCAGCTTGTATGGCACCCTTGCTTCTGAGGCCTCTTTTAGCAGGTGAATGTGAACTTGAGGATGAATCTGACATTAGTGGGGACAATGCTGCTCAGCTTCTTGCAGCAGCTGCTGCAGCTAATAATGCTCAGGCGATTGTTACGATTCTTTTAGAGGA
GTTTGACAACATATTTGAGGATGATCAGACACAGCAAAGTCCCCCTTCTCCTGAAATGTATCCTCAAATGGAGGACAGTGGCAGTGAAGGATCAAGTGATGATGAAGTTCTGCAGTTACGGGAGGATGGATATCATGATGCACAGAATGACCTTGAGGCTGAGCTTGAGGATGACCCTGATCGTGTCCTTAGTGGTACTC
TCAGTGAAAGCAGTGGCAATGGTGGCAGTGACTTATATGATTACAAGGTCTTTGAAGGTGGTGACTCTGATGTTGAGTATCCCGGAGATATGGAAAATTCTGCTACTAAACTCAAAATATCAAATGACTCATTTGCTGAATCTGAACAGCATAGAGAAGAAGAACAAGGGAACACGTATGTGGAAGCAGAAGATGATAAT
CATAGAGACAGTTCGCTTAGTGGAAGTCTACTACCCTGGGGAGCTACTGCTTCCCCTCCAACAAGTCCCAAACTTGGTGTTTCTGGCTCTAGCCCTTGTCCTGGTGTAGGCAGTGCCAAATCTGTAAATAAATCAAATGGTTCTGTATCGACTATCAAGCGCCCTTCACTTTGGAATCGGAACTCTGTGAACAGAAAGAA
TCAATCTGCAGAGCCAACTGACTCTTCTGGAGAAGAAGAACTTGCAATTCAGAGGCTTGAGATGACTAAAAATGACTTACGCAACAAGATTGCTAAGGAGGCCAAAGGAAATGCTATTCTACAAGCCAGTTTGGAGAGAAGAAAACAAGCTTTGCATGAACGCCGCTTAGCACTTGAGCAAGATGTAGCAAGACTACAAG
AACAATTACAAGCTGAGAGAGATCTCAGAGCAGCATTGGAGATTGGACTTAGCATGTCTTCAGGACAGTTTTCTAGTTCTCGCAGTATGGATTCGAAGACACGTGCAGAGCTAGAGGAAATAGCACTTGCTGAAGCAGATGTAGCAAGATTGAAACAAAAGGTTGCTGAACTTCATGTGCAATTAAATCAACAGCGCCAA
CACTACGGATCTCTGTCAGAGACAGGCGATCGGTATCAGCATGTCAAGAGTCTTCAAGCACAGCAGAAAGTTCTACAGCAGGATCTGGATTTGACACTTGCTATGTGGCAGCATGAAAAACAAAAGATCGATGAGGATGGTGTTACGGAGAATGATTGGCCAACCCCAAAACCACCAGCTGTACCTTCTGGGAGGAGCAG
ACAAATCCCATGGAGGCAGCGACATGATTCGATAAGTCCTGTAGATTCTAAAAGCACGGAAGCATCTACCAGCCTTTCCACTGAAGAGATCATAAATGACCCTGAGATTCATAATGGTGTAAAACAAAGTCTTGCTGAAGTAGAGGTGACAGATTCTGCTACATATCAACGCCAACCCGTTGCTTCTTCTGCCTTGGTTG
AGTTAACTACACGGCTTGACTTTTTTAAGGAGCGAAGATCCCAACTTATGGAACAACTTCACAACCTTGATCTTACATTTACTCCAGCTTCTCATGGTTACATGTACACTACATCTCCTCCTTGGACTAGTCCACAATAAGAAGTATTTCTTTGTGTAGAGGCAGGCTTGTTTTTGGTTGAGCGTGGGTTTTGTTTTCTA
TGTGTATATGCAGACACCCATTTTTGGACATTTGTTTGTTGTTTTATTATATATAGATTCATTTAAGTTTCCCCTTAAACATGTCACTGGATTACATCTTGTATATTCCCGAAAAGATGAAAGAACAGCTTCAGGGTACCAAATTGTTCTTTTTACTGGCAGTTAAAAGGAGGCCTTGGAAGCAGTTTATAGATTATTTT
CATGTATTCATAAGCTTCTTTTCTGGAACCCTCGGGGAATGACTGCTATGTTTGCACAGGAATTGTAAAGCATGATCATTCGGCTTGTACCAAAAATTTGTACAATTACAGTGATTTTTGTGCAAGAGCCAAGATATTTGTCTTGGTTGCTTTGTTGCAATTTCAGCGATTATATGACACAGGTTTCTTGAAGCCATTGT
TTATTAAATTTGTGGCTTGGAGATGGCAGGTACAGATTCATTTCAGGATTCCTTGTTCAGGGAGTATATTCATCTTTAAGAATATGGTTGTCATCAAAGAACCAACTATCATTTCCTAGATGTGTGACCTTTTTTTTCCATGATTTTTTTTGTTCCATCAATTGTAATAATAAATATATTTTCTCATATACTACAACATA
TGTATTTATTTTCTCATTGGCGTTTGGTGTGGAAACAACACAGTTCATGGTTGATAGTAGAAATCCCAGGCAAAAGTCCAAACAGTAGACTGCCTGGATAATGACTACCATCCGCAGCCATGAGAACCAATTGGTAACCATCCTGGATATCGACATACCACCATAATGGAGAGTACAGAAATGGACCTCTAAGACTTTTA
TTCCATGATTCTTGGTTGAAATCCTTGCG