NA ----> NA
Intron 1 GTGGACCTTC ... CTTCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27 | 95.3 | 13.6 | 35 |
| A2 | 31.77 | 74 | 12.9 | 34 |
| A3 | 31.15 | 69.7 | 18.3 | 31 |
| A4 | 23.56 | 40 | 10.6 | 12 |
| A5 | 19.48 | 21 | 5.7 | 5 |
| A6 | 28.67 | 132.3 | 20.3 | 53 |
| A7 | 31.02 | 352.7 | 59.9 | 157 |
| A8 | 30.83 | 409.7 | 85.8 | 180 |
| A9 | 29.69 | 309.7 | 64.7 | 129 |
| A10 | 32.38 | 251.7 | 50.8 | 119 |
>TRINITY_DN121373_c8_g1_i6 from sample A1 / Example spliced isoformTCAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAAAAGTTGTATTTGGGACCCTCGCCGATTTTTTGCCGATGCCAATTTTTTC
AACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGTATGGCTGCATTGGAGCACAATGTCTAGCCTTTGCACTGTGATAATTAGCAACACTGGTCAACAGCTTTGCATTTTCAA
CATGTTATTTCAAAAAGGGAATTGCAGCCAGCTTTTTTATTGATTCATTTTGTTTCCCAACATTCTGAGGGAATTTGCAGATACCGAGTATGCCATTTTTATAATTTTGTGCAATTGTGTTGTTATTCACAGGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACATTGAAAAGAGATTTACGTCA
ATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGGTGAAGTTCAGAGAGACCTCGACATTGGATGAGCAACATTATTTTGAGAATAATATTTCTGGTTGTGTGTGTAAAACATTCATGCCAGTCTAGCTTACGATATTAAGTTATTGGTTTACAGCTGGTTTTTGATGTCTCTAAGGGACGACAC
TTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAA
AACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATT
GTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTG
TCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAA
TGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAGTGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATG
ACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAATCAACAATGAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAA
TTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATAAATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTT
ACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCTTGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATAT
CCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGACTGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAG
TGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
>TRINITY_DN121373_c8_g1_i5 from sample A1 / Example unspliced isoform:GGCTGAAGAGGAGGCTTTGAAGgtggaccttcttgcaatgcaaacttcatttttgttgattatgtatatttttactagtaaacattttgattgcatatccgtggatcactggctcattttgagggaagtttttcttcacacagGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATT
TTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATAAATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCA
CTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCTTGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTC
TGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGACTGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGA
GGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
Intron 2 GTATTTGACA ... TCATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.57 | 91.4 | 24.3 | 26.8 |
| A2 | 14.25 | 49 | 8.3 | 5.6 |
| A3 | 20.98 | 64.8 | 17.9 | 12.3 |
| A4 | 21.15 | 34.5 | 9.4 | 6.8 |
| A5 | 17.24 | 20.9 | 4.5 | 8 |
| A6 | 19.77 | 81.8 | 20.7 | 27 |
| A7 | 19.52 | 261.2 | 65.1 | 57.5 |
| A8 | 18.55 | 323.2 | 75.7 | 52.4 |
| A9 | 21.32 | 242.9 | 67.4 | 34.4 |
| A10 | 22.24 | 200.1 | 59.3 | 28.3 |
>TRINITY_DN121373_c8_g1_i6 from sample A1 / Example spliced isoformTCAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAAAAGTTGTATTTGGGACCCTCGCCGATTTTTTGCCGATGCCAATTTTTTC
AACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGTATGGCTGCATTGGAGCACAATGTCTAGCCTTTGCACTGTGATAATTAGCAACACTGGTCAACAGCTTTGCATTTTCAA
CATGTTATTTCAAAAAGGGAATTGCAGCCAGCTTTTTTATTGATTCATTTTGTTTCCCAACATTCTGAGGGAATTTGCAGATACCGAGTATGCCATTTTTATAATTTTGTGCAATTGTGTTGTTATTCACAGGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACATTGAAAAGAGATTTACGTCA
ATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGGTGAAGTTCAGAGAGACCTCGACATTGGATGAGCAACATTATTTTGAGAATAATATTTCTGGTTGTGTGTGTAAAACATTCATGCCAGTCTAGCTTACGATATTAAGTTATTGGTTTACAGCTGGTTTTTGATGTCTCTAAGGGACGACAC
TTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAA
AACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATT
GTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTG
TCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAA
TGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAGTGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATG
ACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAATCAACAATGAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAA
TTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATAAATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTT
ACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCTTGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATAT
CCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGACTGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAG
TGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
>TRINITY_DN121373_c8_g1_i4 from sample A1 / Example unspliced isoform:GGGCCCTCTAAGCACAATTCTACTTCGAACATATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATAAG
GAGATAAGCACACCGCTGCTCAAAGCCATGATATTCATGCACATTCCAGACATGGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCTAC
TGATCAGGCCTTGCTTCTCCGAGTTTGTACGGAGTCAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAATTGTATTTGGGACCC
TCGCCGATTTTTTGCCGATGCCAATTTTTTCAACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACAT
TGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATAT
GAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCC
AGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACT
TACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTAC
AAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAG
TGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATGACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAAT
CAACAATGAGgtatttgacaacacaattttgggatacaaggattttgaatttttccatggtatttaaattttaatctatcagtttctgtatttgtaagatttgtttcaaaggtaaatttctgccagccatctttgaggatttgaatgaaaagagtctaaactaaaatatcttttactttagagcaatttactctgctagt
tgtcatgtacagGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATA
AATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCT
TGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGAC
TGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
Intron 3 GTATGGCTGC ... TTATTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.52 | 33 | 9 | 17.3 |
| A2 | 24.5 | 19 | 8 | 4.3 |
| A3 | 35.55 | 19 | 10 | 11 |
| A4 | 32.23 | 21 | 10 | 10 |
| A5 | 20 | 10 | 3 | 2 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 23.09 | 51 | 15 | 15.7 |
| A8 | 24.07 | 32 | 13 | 7.3 |
| A9 | 23.2 | 32 | 8 | 11.3 |
| A10 | 27.68 | 54 | 24 | 17.3 |
>TRINITY_DN115353_c9_g2_i5 from sample A3 / Example spliced isoformGTGGGCCCTCTAAGCACAATTCTACTTCGAACATATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATA
AGGAGATAAGCACACCGCTGCTCAAAGCCATGATATTCATGCACATTCCAGACATGGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCT
ACTGATCAGGCCTTGCTTCTCCGAGTTTGTACGGAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAATTGTATTTGGGACCCTC
GCCGATTTTTTGCCGATGCCAATTTTTTCAACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACATTG
AAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATATGA
ACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCCAG
ATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACTTA
CTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTACAA
AAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAGTG
ATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATGACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAATCA
ACAATGAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATAAATG
GCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCTTGCT
TGTGTAATTTTTCCACATGCCTATGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGACTGGC
ATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGC
>TRINITY_DN115353_c9_g2_i2 from sample A3 / Example unspliced isoform:GTGGGCCCTCTAAGCACAATTCTACTTCGAACATATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATA
AGGAGATAAGCACACCGCTGCTCAAAGCCATGATATTCATGCACATTCCAGACATGGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCT
ACTGATCAGGCCTTGCTTCTCCGAGTTTGTACGGAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAATTGTATTTGGGACCCTC
GCCGATTTTTTGCCGATGCCAATTTTTTCAACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGgtatggctgcattggagcacaatgtctagcctttgcactgtgataattagc
aacactggtcaacagctttgcattttcaacatgttatttcaaaaagggaattgcagccagctttttttattgattcattttgtttcccaacattctgagggaatttgcagataccgagtatgccatttttataattttgtgcaattgtgttgttattcacagGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCC
TGTTGAAACATTGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAG
ACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGA
AATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAG
GGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATG
TCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCT
AGTCATGCAAGTGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATGACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACG
TGCTAGGAAATCAACAATGAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACT
TGAAGGATAAATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTT
TATTTTGCTTGCTTGTGTAATTTTTCCACATGCCTATGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCT
TGGACAGACTGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGC
Intron 4 GTCAACAGCT ... TTATTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.34 | 11 | 1 | 18 |
| A2 | 42.86 | 8 | 7 | 5 |
| A3 | 51.22 | 10 | 8 | 13 |
| A4 | 28.81 | 21 | 5 | 12 |
| A5 | 50 | 3 | 4 | 2 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 38.24 | 21 | 7 | 19 |
| A8 | 48.15 | 7 | 3 | 10 |
| A9 | 30.61 | 17 | 3 | 12 |
| A10 | 31.65 | 27 | 7 | 18 |
>TRINITY_DN117140_c4_g2_i1 from sample A2 / Example spliced isoformATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATAAGGAGATAAGCACACCGCTGCTCAAAGCCATGAT
ATTCATGCACATTCCAGACATAGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCTACTGATCAGGCCTTGCTTCTCCGAGTTTGTACGG
AGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAATTGTATTTGGGACCCTCGCCGATTTTTTGCCGATGCCAATTTTTTCAACAA
TGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGTATGGCTGCATTGGAGCACAATGTCTAGCCTTTGCACTGTGATAATTAGCAACACTGGATCAAAACACTTGTCTTTCTACACTA
GAGAAGTATCCTGTTGAAACATTGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTA
TAGAGAAGCAGACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAA
CAGCTACTGGAAATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCC
ACAAGTACCAGGGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTT
TGATTGCCATGTCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAA
>TRINITY_DN117140_c4_g2_i6 from sample A2 / Example unspliced isoform:TTGTATTTGGGACCCTCGCCGATTTTTTGCCGATGCCAATTTTTTCAACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGTATGGCTGCATTGGAGCACAATGTCTAGCCTTT
GCACTGTGATAATTAGCAACACTGgtcaacagctttgcattttcaacatgttatttcaaaaagggaattgcagccagcttttttattgattcattttgtttcccaacattctgagggaatttgcagataccgagtatgccatttttataattttgtgcaattgtgttgttattcacagGATCAAAACACTTGTCTTTCTA
CACTAGAGAAGTATCCTGTTGAAACATTGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGA
TTGTATAGAGAAGCAGACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATAC
TCAAACAGCTACTGGAAATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAG
AGGCCACAAGTACCAGGGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAA
ACTTTTGATTGCCATGTCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAA
Intron 5 GTATGGCTGC ... TTATTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.84 | 33 | 9 | 17.8 |
| A2 | 25.12 | 19 | 8 | 4.8 |
| A3 | 36.89 | 19 | 10 | 12.3 |
| A4 | 33.57 | 21 | 10 | 11.3 |
| A5 | 20 | 10 | 3 | 2 |
| A6 | 0 | 4 | 0 | 0 |
| A7 | 24.29 | 51 | 15 | 17.8 |
| A8 | 25.55 | 32 | 13 | 9 |
| A9 | 23.58 | 32 | 8 | 11.8 |
| A10 | 27.88 | 54 | 24 | 17.8 |
>TRINITY_DN121373_c8_g1_i4 from sample A1 / Example spliced isoformGGGCCCTCTAAGCACAATTCTACTTCGAACATATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATAAG
GAGATAAGCACACCGCTGCTCAAAGCCATGATATTCATGCACATTCCAGACATGGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCTAC
TGATCAGGCCTTGCTTCTCCGAGTTTGTACGGAGTCAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAATTGTATTTGGGACCC
TCGCCGATTTTTTGCCGATGCCAATTTTTTCAACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACAT
TGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATAT
GAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCC
AGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACT
TACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTAC
AAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAG
TGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATGACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAAT
CAACAATGAGGTATTTGACAACACAATTTTGGGATACAAGGATTTTGAATTTTTCCATGGTATTTAAATTTTAATCTATCAGTTTCTGTATTTGTAAGATTTGTTTCAAAGGTAAATTTCTGCCAGCCATCTTTGAGGATTTGAATGAAAAGAGTCTAAACTAAAATATCTTTTACTTTAGAGCAATTTACTCTGCTAGT
TGTCATGTACAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATA
AATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCT
TGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGAC
TGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
>TRINITY_DN121373_c8_g1_i6 from sample A1 / Example unspliced isoform:TCAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAAAAGTTGTATTTGGGACCCTCGCCGATTTTTTGCCGATGCCAATTTTTTC
AACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGgtatggctgcattggagcacaatgtctagcctttgcactgtgataattagcaacactggtcaacagctttgcattttcaa
catgttatttcaaaaagggaattgcagccagcttttttattgattcattttgtttcccaacattctgagggaatttgcagataccgagtatgccatttttataattttgtgcaattgtgttgttattcacagGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACATTGAAAAGAGATTTACGTCA
ATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGGTGAAGTTCAGAGAGACCTCGACATTGGATGAGCAACATTATTTTGAGAATAATATTTCTGGTTGTGTGTGTAAAACATTCATGCCAGTCTAGCTTACGATATTAAGTTATTGGTTTACAGCTGGTTTTTGATGTCTCTAAGGGACGACAC
TTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAA
AACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATT
GTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTG
TCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAA
TGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAGTGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATG
ACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAATCAACAATGAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAA
TTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATAAATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTT
ACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCTTGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATAT
CCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGACTGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAG
TGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
Intron 6 GTGAAGTTCA ... TGGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.15 | 69.5 | 11.8 | 30 |
| A2 | 29.78 | 37.7 | 3.7 | 16 |
| A3 | 33.65 | 33.5 | 7.5 | 17 |
| A4 | 15.76 | 26.7 | 11.3 | 5 |
| A5 | 26.64 | 16.6 | 3.5 | 6 |
| A6 | 42.11 | 11 | 1.6 | 8 |
| A7 | 18.66 | 87.2 | 13.4 | 20 |
| A8 | 27.61 | 47.2 | 8.9 | 18 |
| A9 | 26.2 | 67.6 | 13.3 | 24 |
| A10 | 19.05 | 89.4 | 18 | 21 |
>TRINITY_DN121373_c8_g1_i4 from sample A1 / Example spliced isoformGGGCCCTCTAAGCACAATTCTACTTCGAACATATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATAAG
GAGATAAGCACACCGCTGCTCAAAGCCATGATATTCATGCACATTCCAGACATGGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCTAC
TGATCAGGCCTTGCTTCTCCGAGTTTGTACGGAGTCAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAATTGTATTTGGGACCC
TCGCCGATTTTTTGCCGATGCCAATTTTTTCAACAATGCTTTATAATAGTGGCAGATACATTCTGCAAGGGAACATACCATGGTGGAGTTGGATACCCACACATGGGCAGCATAGCTGACACTAACATGATGAATTGTTTAGCCCACGCTGGATCAAAACACTTGTCTTTCTACACTAGAGAAGTATCCTGTTGAAACAT
TGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATAT
GAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAGATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCC
AGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTACTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACT
TACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAAAGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTAC
AAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAATCCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAG
TGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGCTCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATGACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAAT
CAACAATGAGGTATTTGACAACACAATTTTGGGATACAAGGATTTTGAATTTTTCCATGGTATTTAAATTTTAATCTATCAGTTTCTGTATTTGTAAGATTTGTTTCAAAGGTAAATTTCTGCCAGCCATCTTTGAGGATTTGAATGAAAAGAGTCTAAACTAAAATATCTTTTACTTTAGAGCAATTTACTCTGCTAGT
TGTCATGTACAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATTAGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATA
AATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGATGAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCT
TGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTCAATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGAC
TGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATTTGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT
>TRINITY_DN121373_c8_g1_i1 from sample A1 / Example unspliced isoform:GGGCCCTCTAAGCACAATTCTACTTCGAACATATTTGAGTAGCTAATTGCCGCCAATGAACCGCGAATTGCGAAGCTATACATGCCTGTGGAGTAAATTATCGGCTAATGGGCGAAGTCGAGGAATCCGCCATGGCCAAAGCTTCAACCCCAACGACCTTGCCTTGGGAATGGATCGTCGAGAAGCTCGTTGACAATAAG
GAGATAAGCACACCGCTGCTCAAAGCCATGATATTCATGCACATTCCAGACATGGACAATTCTTCGTGCAGTAATCTGCAAGGGAGAATTGCGTTGAGATATCTGGAGGAAGTTCTCTTACTTGAAAGACTCGAAGTACACGCGATACCTCTCGTAAAGGTTCTGCTTCGTTCATCTATACCAAACTCAAGTTCGGCTAC
TGATCAGGCCTTGCTTCTCCGAGTTTGTACGGAGGTTGTTTTAGGGCACATAAGAGAGCTTGATGAAAATGGAGAAAGGGATTGGGAGGGCTTTGAAGATGATTTAAAACGCATATTTACAGAGAAGGACTCTTCACTGCCATTCATCAACCGGAGAAAAGAGCTCCTTCAGATCTTGGAAGATCAAAACACTTGTCTTT
CTACACTAGAGAAGTATCCTGTTGAAACATTGAAAAGAGATTTACGTCAATTTGTTCATGTGAAGAAAGCTTGTCTGAACAGGACTGTTCTTGACCAGgtgaagttcagagagacctcgacattggatgagcaacattattttgagaataatatttctggttgtgtgtgtaaaacattcatgccagtctagcttacgata
ttaagttattggtttacagCTGGTTTTTGATGTCTCTAAGGGACGACACTTTCCTTCGTTGTTGCATAATATGCATCCATCACCGACAGGAGAAGAATGCACCAATAGTGGAGGTAGAAAGCGATTGTATAGAGAAGCAGACTTGCCATATGAACATACAAGTTCAGAAGGTGAAAAGAGGTTAAAGCACGGTGGAAAAG
ATAGCACTCCATCTAATATTGAAAATACAAGAGAGTGCATTATAGAAAAAACAAATAATGGTTCTGAAAATGGTTTCCAGAACAATTCTTTATGTACTTCAACCCGGGATTTGCAGAAAGATACTCAAACAGCTACTGGAAATGGTTTGCCAGATATTGGATCTAAACCAGAAATCCATGTCATAAGAGATGAAAAATTA
CTGCAGGTTTCAAGTGGCACTGAGTCAACTTCTAATGGTCATTCGCATTGTAGTGAGAGGAGAGATGATGGGGTTTGTTGCTTGGAGGGAGAAACAGATGAACTTGAGGAGGAAAACAATTCAGAGGCCACAAGTACCAGGGAACACCACTTACTTGAGGCAGAGGAGTTACCAGAATTGGATTTGCTGATACCAGGCAA
AGATGCTCGGGAACAAATTTGTTTCAAATGTAGAGAAGGTGGAGTATTGTCCTGTTGCAGTGGGTGTTCTATTGCCATGCATGATGAATGTTTTAAATTATATGCATCTACTATTCCAGGTGAAACTTTTGATTGCCATGTCTGTTCTTACAAAAGAGCCCTTGCAGCTTACCAAAAAGCAAAGAAAGATGCTATAGAAT
CCAAAAAAAGATTACTTGCATTCCTAAATAATAGGTCAGTCCAAGGTAATGAACAGAGATCACGGAACGGTAATCATAAGAAATGTGAAAAAGGAGGGGAAGCATTTTCCAACAAAATGAAGATTTCTGAAGAGCCTTCTAGTCATGCAAGTGATTTTAGTTTTGGTTCCAAGAGAAAACAACATCTGTGTAGCAAAAGC
TCTGGAATTTCTGTTCATGAAAATGAAAGACCAGTTGAAAGTGAAAATGACCTACACTGTAAACAGAATGAAGCTGACGATGGTATGCATGGTGGAGATCTTGAAGATGGTAACAATGAGGATAGGAAATACCATTTACGTGCTAGGAAATCAACAATGAGGGGAACCTGTCGTCTGCCTGGTGTACGTAGGAACGCATT
AGCTTGGAAAAAGGCTGAAGAGGAGGCTTTGAAGGAAGGTATGCAGAAATTTTCAATTGGAGAAACCAATGTAATCCCATGGAAACGGATTTTGGAACATGGGAAAGGGATATTTGACAAGTCGCGTTTGCCAGCTGACTTGAAGGATAAATGGCGTAATATGAAGAAGAGTAATTCCTGAAGCATGTACATACATGGAT
GAGATTTGTGACTGCATAATACAAGGCAAAATTTCTGATTCAAGTATTTACAATCTTGGATTCTTGGTTGTGGCGCTTAGGCACTTCTCCACTGAATGATTTCAAGCGAATTAAAAATTCTGCAGTGCCACGGCATGTTTTATTTTGCTTGCTTGTGTAATTTTTCCACATGCCTGTGTTACCATCAAAACAGTCACCTC
AATTGTAGAGCTCCAGCTCAAATGAGAGCATATTTATTCTGCTAAATATCCGAAGTTAATTCCTAGTCAATCTGAGTCATCTCAGCCTGTCTGAGGGTGAATGCTAATTAAAATTTGATGCTGTTTACAAGTGGAGGGCTTGGACAGACTGGCATGCCTAAAGCTAATGCTTCCGTCAAGCAATGGAGTCTAGGAATATT
TGTATGCTTGGGAATTGGTTGCCTATGTCCAATAAATATTGCTGTTCAGTGCTTTTGTTTGCAGCTACAACTGCTTTGTATAAAAAATGGAGGGAGATGTCAATTACCATGTTTAACTTTACATTTGGTATTCT