sp|Q42586|UMPS_ARATH ----> Uridine 5'-monophosphate synthase


Intron 1 GTAAGTAATA ... ATCTATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A120.3447612
A212.823465
A35.365363
A420.83191.55
A531.821517
A612.5813926.520
A712.781573123
A814.3911913.520
A916.8812821.526
A1012.931011715



>TRINITY_DN41305_c0_g1_i1 from sample A7 / Example spliced isoform
CCTTTCTAATTTGGTAAAGGTTGAACTTTTTCACAGAGGCAGGAATGTTACTTCCTCTTTACATTGACAATGAGATATTTGGGCGGGCTCTAAGATACTGGACCAGTCAACCACGCCAATAACTTGCTTTCCCATACTCATTTCATGTTTAGACTGTTTTTATCCTATGAAATCCCTGTTTTTTTCTTAAACTGTCTTTG
AAACGGTTTTTGTGGGTTCGGTTCTTCTCAATTTCTGGGATGCGATATGACCGGGAGTTTGTAGAACGAGCAAAATCTCCTAAAAAATTCTCAAAATCAAAGCTAGTTTAGCAAACTAGCAGTACCATAGACGTAACGAATCTATACCATACATTATAAAATCATTCTAGATGTAATAATTACTTGACCATACCACACAT
TAAAACCCAAAACCCTATAAGCAAGAGTAGTATTCCCATGCAAACCTATATTGTGGACTATAAAATTACCTTACTACCATGATGATGCAGCGAAGCACTAAGCACTAGCGGAATGAATAGTACACAACATTTCGGTGATCGATAGAGTCAGCCACCCTGAAGTTTTATGATCCATCCAAATTATCAGGCACTCGTGGGGA
AGGAAAGCAGAAGCTTATCTGTTGTGATTATTGCTTCTGTTTCATTTGGTTTGTGGGGTGGATCCAATGGAAGAATTGATACTGGAGCTTTACAAGGTTGAAGCTGTGAAATTTGGGAACTTCAAGCTGAAGAGTGGGATATCATCCCCCATATACATTGATTTGAGGCTTATAGTCTCATACCCACATCTTCTCAAGCT
CGTTTCTGAGACCATCTGGAACAAGATCTCATCCCTCAAATTTGAGGTAATTTGTGGAGTCCCCTACACCGCTCTGCCCATTGCGACATGCATCTCACTGGCCCAATCGGTCCCCATGGTCATGAGAAGGAAGGAGGTCAAGGATTATGGCACCAAAAAATCCATTGAAGGAGTCTTCAGCCCAGGGCAAACGTGCCTGG
TTATTGAAGATCTGGTGACTAGCGGAGCCTCTGTATTGGAGACTGTTGGGCCTCTTAAATCCGTGGGCCTCAATGTGAGTGATACAGTTGTTCTCATTGACAGAGAACAGGGTGGGTCAGATAACTTGGCCAACAATGGCATCGCATTGCACTCGGCCCTTAAGCTCACACAGATGGTGGATGTGCTTGTGAAACATGGC
AAGCTCTCTGCGGAGATCGCGGATTCCGTGAGGAGGTTCATTGCAGAGAACCAGACGAAGGTGCTTGTCCCTTCCCCTTCCCCTGTTTCCGTTGATGGTGTTAGGAAGAGGAGCTCTTATGGTGAGAGGGCTGCTCTCTCTCAGAACCCAACTGGTAGAAAGCTGTTTGAGCTCATGGAGAGGAAGAAGACGAATCTATC
TGTAGCAGCTGATGTCTCTACAGCCAAAGAGCTTGTCTGCCTCGCGGAAGCTGTTGGGCCTGAGATATGTATTCTGAAAACACATGTCGACATACTACCTGACTTCACGCCTGACTTTGGTGCTCGACTTCGTGCGATTGCAGACAAGCATGATTTCTTAATTTTCGAAGATAGGAAGTTTGCTGACATTGGAAATACAG
TGACCATGCAATATGAAGGAGGAATTTTCAAAATTGTAGAGTGGGCGGATATTGTAAATGCACATGTCATTCCTGGTCCTGGCATAGTGGAAGGGTTGAAACTGAAGGGCCTACCGCATGGAAGGGGTTTACTGCTACTTGCAGAAATGAGCTCTGCTGGAACTCTTGCCAAGGGTGAATATACATCCGCTGCAGTAACG
ATTGCCTCTGACCATCCTGATTTTGTAATTGGTTTCATATCCATTAATCCAGCATCTTGGCCAGAGGGACCAGGAAACCCTGCATTGATACACATGACTCCAGGAGTGCAGTTGAGCAGTGGAGGAGATGCTCTAGGTCAGCAGTACAACACTCCTGCTTCAGTTATTGGTGAAAGGGGTAGTGATGTATTAATTGTTGG
TCGTGGTATTATCAAAGCAAAGGACCAAGTTATGGCGGCCCACCAATACCGTATTGCGGGGTGGGATGCATACGAGAAAACCATCAAAATGGGAGGAGGGCTTTGAACAGATGATTATGGTGCAGAGTTTTTGCAAGTTTACTAGCTTGGTCGAAATGTGCAAGATTTCTATTAAGATTGAATTAGTGAATACTTCCATG
GGAATATTGATTTTAGTGGCAGTTTTCTTTCATCAGGATCAGAGTGATTGCGTATTTGAGAACATAAATAATTTACCCCTTGTTCCATATGCTGCTGCTGAAAATTTACTTATGGAACTTCTCTCTGCACATGGATAAATGTTTTATGCAATGCTGCAGGTGATGATCCTAGAGGGTCTCATTATTTGCCTTTTTTTCTT
TGTATTTGTCTCAAATGGACAGTAATGGTGTTCTTGAATCATTACAAATTCAGATCAATAAAGTTCATATGTTATAATTAAGTTGGATCTATTGACTTG


>TRINITY_DN41305_c0_g1_i2 from sample A7 / Example unspliced isoform:
CCTTTCTAATTTGGTAAAGGTTGAACTTTTTCACAGAGGCAGGAATGTTACTTCCTCTTTACATTGACAATGAGATATTTGGGCGGGCTCTAAGATACTGGACCAGTCAACCACGCCAATAACTTGCTTTCCCATACTCATTTCATGTTTAGACTGTTTTTATCCTATGAAATCCCTGTTTTTTTCTTAAACTGTCTTTG
AAACGGTTTTTGTGGGTTCGGTTCTTCTCAATTTCTGGGATGCGATATGACCGGGAGTTTGTAGAACGAGCAAAATCTCCTAAAAAATTCTCAAAATCAAAGCTAGTTTAGCAAACTAGCAGTACCATAGACGTAACGAATCTATACCATACATTATAAAATCATTCTAGATGTAATAATTACTTGACCATACCACACAT
TAAAACCCAAAACCCTATAAGCAAGAGTAGTATTCCCATGCAAACCTATATTGTGGACTATAAAATTACCTTACTACCATGATGATGCAGCGAAGCACTAAGCACTAGCGGAATGAATAGTACACAACATTTCGGTGATCGATAGAGTCAGCCACCCTGAAGTTTTATGATCCATCCAAATTATCAGGCACTCGTGGGGA
AGGAAAGCAGAAGCTTATCTGTTGTGATTATTGCTTCTGTTTCATTTGGTTTGTGGGGTGGATCCAATGGAAGAATTGATACTGGAGCTTTACAAGGTTGAAGCTGTGAAATTTGGGAACTTCAAGCTGAAGAGTGGGATATCATCCCCCATATACATTGATTTGAGGCTTATAGTCTCATACCCACATCTTCTCAAGCT
CGTTTCTGAGACCATCTGGAACAAGATCTCATCCCTCAAATTTGAGGTAATTTGTGGAGTCCCCTACACCGCTCTGCCCATTGCGACATGCATCTCACTGGCCCAATCGGTCCCCATGGTCATGAGAAGGAAGGAGGTCAAGGATTATGGCACCAAAAAATCCATTGAAGGAGTCTTCAGCCCAGGGCAAACGTGCCTGG
TTATTGAAGATCTGGTGACTAGCGGAGCCTCTGTATTGGAGACTGTTGGGCCTCTTAAATCCGTGGGCCTCAATGTGAGTGATACAGTTGTTCTCATTGACAGAGAACAGGGTGGGTCAGATAACTTGGCCAACAATGGCATCGCATTGCACTCGGCCCTTAAGCTCACACAGATGGTGGATGTGCTTGTGAAACATGGC
AAGCTCTCTGCGGAGATCGCGGATTCCGTGAGGAGGTTCATTGCAGAGAACCAGACGAAGGTGCTTGTCCCTTCCCCTTCCCCTGTTTCCGTTGATGGTGTTAGGAAGAGGAGCTCTTATGGTGAGAGGGCTGCTCTCTCTCAGAACCCAACTGGTAGAAAGCTGTTTGAGCTCATGGAGAGGAAGAAGACGAATCTATC
TGTAGCAGCTGATGTCTCTACAGCCAAAGAGCTTGTCTGCCTCGCGGAAGCTGTTGGGCCTGAGATATGTATTCTGAAAACACATGTCGACATACTACCTGACTTCACGCCTGACTTTGGTGCTCGACTTCGTGCGATTGCAGACAAGCATGATTTCTTAATTTTCGAAGATAGGAAGTTTGCTGACATTGGAAATACAG
TGACCATGCAATATGAAGGgtaagtaatagctgtgttgacacacattataattaacatgtttctttcatgggtcatatgtaaggctggttaggttttcttggagatttgaccaatactggacaattctctgttacactgggaaaacattaaaatggtttcaatctatgcagAGGAATTTTCAAAATTGTAGAGTGGGCGG
ATATTGTAAATGCACATGTCATTCCTGGTCCTGGCATAGTGGAAGGGTTGAAACTGAAGGGCCTACCGCATGGAAGGGGTTTACTGCTACTTGCAGAAATGAGCTCTGCTGGAACTCTTGCCAAGGGTGAATATACATCCGCTGCAGTAACGATTGCCTCTGACCATCCTGATTTTGTAATTGGTTTCATATCCATTAAT
CCAGCATCTTGGCCAGAGGGACCAGGAAACCCTGCATTGATACACATGACTCCAGGAGTGCAGTTGAGCAGTGGAGGAGATGCTCTAGGTCAGCAGTACAACACTCCTGCTTCAGTTATTGGTGAAAGGGGTAGTGATGTATTAATTGTTGGTCGTGGTATTATCAAAGCAAAGGACCAAGTTATGGCGGCCCACCAATA
CCGTATTGCGGGGTGGGATGCATACGAGAAAACCATCAAAATGGGAGGAGGGCTTTGAACAGATGATTATGGTGCAGAGTTTTTGCAAGTTTACTAGCTTGGTCGAAATGTGCAAGATTTCTATTAAGATTGAATTAGTGAATACTTCCATGGGAATATTGATTTTAGTGGCAGTTTTCTTTCATCAGGATCAGAGTGAT
TGCGTATTTGAGAACATAAATAATTTACCCCTTGTTCCATATGCTGCTGCTGAAAATTTACTTATGGAACTTCTCTCTGCACATGGATAAATGTTTTATGCAATGCTGCAGGTGATGATCCTAGAGGGTCTCATTATTTGCCTTTTTTTCTTTGTATTTGTCTCAAATGGACAGTAATGGTGTTCTTGAATCATTACAAA
TTCAGATCAATAAAGTTCATATGTTATAATTAAGTTGGATCTATTGACTTG



Intron 2 GTGCTTGTCC ... TCTCTCTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A171.0611.5345
A286.466.55020
A372.216.54534
A471.978.52315
A563.413.52116
A678.412911490
A779.9125.511277
A874.0318.55739
A974.5523.56866
A1078.2919.57264



>TRINITY_DN98754_c0_g1_i2 from sample A5 / Example spliced isoform
CTAAGATACTGGACCAGTCAACCACGCCAATAACTTGCTTTCCCATACTCATTTCATGTTTAGACTGTTTTTATCCTATGAAATCCCTGTTTTTTTCTTAAACTGTCTTTGAAACGGTTTTTGTGGGTTCGGTTCTTCTCAATTTCTGGGATGCGATATGACCGGGAGTTTGTAGAACGAGCAAAATCTCCTAAAAAATT
CTCAAAATCAAAGCTAGTTTAGCAAACTAGCAGTACCATAGACGTAACGAATCTATACCATACATTATAAAATCATTCTAGATGTAATAATTACTTGACCATACCACACATTAAAACCCAAAACCCTATAAGCAAGAGTAGTATTCCCATGCAAACCTATATTGTGGACTATAAAATTACCTTACTACCATGATGATGCA
GCGAAGCACTAAGCACTAGCGGAATGAATAGTACACAACATTTCGGTGATCGATAGAGTCAGCCACCCTGAAGTTTTATGATCCATCCAAATTATCAGGCACTCGTGGGGAAGGAAAGCAGAAGCTTATCTGTTGTGATTATTGCTTCTGTTTCATTTGGTTTGTGGGGTGGATCCAATGGAAGAATTGATACTGGAGCT
TTACAAGGTTGAAGCTGTGAAATTTGGGAACTTCAAGCTGAAGAGTGGGATATCATCCCCCATATACATTGATTTGAGGCTTATAGTCTCATACCCACATCTTCTCAAGCTCGTTTCTGAGACCATCTGGAACAAGATCTCATCCCTCAAATTTGAGGTAATTTGTGGAGTCCCCTACACCGCTCTGCCCATTGCGACAT
GCATCTCACTGGCCCAATCGGTCCCCATGGTCATGAGAAGGAAGGAGGTCAAGGATTATGGCACCAAAAAATCCATTGAAGGAGTCTTCAGCCCAGGGCAAACGTGCCTGGTTATTGAAGATCTGGTGACTAGCGGAGCCTCTGTATTGGAGACTGTTGGGCCTCTTAAATCCGTGGGCCTCAATGTGAGTGATACAGTT
GTTCTCATTGACAGAGAACAGGGTGGGTCAGATAACTTGGCCAACAATGGCATCGCATTGCACTCGGCCCTTAAGCTCACACAGATGGTGGATGTGCTTGTGAAACATGGCAAGCTCTCTGCGGAGATCGCGGATTCCGTGAGGAGGTTCATTGCAGAGAACCAGACGAAGAACCCAACTGGTAGAAAGCTGTTTGAGCT
CATGGAGAGGAAGAAGACGAATCTATCTGTAGCAGCTGATGTCTCTACAGCCAAAGAGCTTGTCTGCCTCGCGGAAGCTGTTGGGCCTGAGATATGTATTCTGAAAACACATGTCGACATACTACCTGACTTCACGCCTGACTTTGGTGCTCGACTTCGTGCGATTGCAGACAAGCATGATTTCTTAATTTTCGAAGATA
GGAAGTTTGCTGACATTGGAAATACAGTGACCATGCAATATGAAGGAGGAATTTTCAAAATTGTAGAGTGGGCGGATATTGTAAATGCACATGTCATTCCTGGTCCTGGCATAGTGGAAGGGTTGAAACTGAAGGGCCTACCGCATGGAAGGGGTTTACTGCTACTTGCAGAAATGAGCTCTGCTGGAACTCTTGCCAAG
GGTGAATATACATCCGCTGCAGTAACGATTGCCTCTGACCATCCTGATTTTGTAATTGGTTTCATATCCATTAATCCAGCATCTTGGCCAGAGGGACCAGGAAACCCTGCATTGATACACATGACTCCAGGAGTGCAGTTGAGCAGTGGAGGAGATGCTCTAGGTCAGCAGTACAACACTCCTGCTTCAGTTATTGGTGA
AAGGGGTAGTGATGTATTAATTGTTGGTCGTGGTATTATCAAAGCAAAGGACCAAGTTATGGCGGCCCACCAATACCGTATTGCGGGGTGGGATGCATACGAGAAAACCATCAAAATGGGAGGAGGGCTTTGAACAGATGATTATGGTGCAGAGTTTTTGCAAGTTTACTAGCTTGGTCGAAATGTGCAAGATTTCTATT
AAGATTGAATTAGTGAATACTTCCATGGGAATATTGATTTTAGTGGCAGTTTTCTTTCATCAGGATCAGAGTGATTGCGTATTTGAGAACATAAATAATTTACCCCTTGTTCCATATGCTGCTGCTGAAAATTTACTTATGGAACTTCTCTCTGCACATGGATAAATGTTTTATGCAATGCTGCAGGTGATGATCCTAGA
GGGTCTCATTATTTGCCTTTTTTTCTTTGTATTTGTCTCAAATGGACAGTAATGGTGTTCTTGAATCATTACAAATTCA


>TRINITY_DN98754_c0_g1_i1 from sample A5 / Example unspliced isoform:
CTAAGATACTGGACCAGTCAACCACGCCAATAACTTGCTTTCCCATACTCATTTCATGTTTAGACTGTTTTTATCCTATGAAATCCCTGTTTTTTTCTTAAACTGTCTTTGAAACGGTTTTTGTGGGTTCGGTTCTTCTCAATTTCTGGGATGCGATATGACCGGGAGTTTGTAGAACGAGCAAAATCTCCTAAAAAATT
CTCAAAATCAAAGCTAGTTTAGCAAACTAGCAGTACCATAGACGTAACGAATCTATACCATACATTATAAAATCATTCTAGATGTAATAATTACTTGACCATACCACACATTAAAACCCAAAACCCTATAAGCAAGAGTAGTATTCCCATGCAAACCTATATTGTGGACTATAAAATTACCTTACTACCATGATGATGCA
GCGAAGCACTAAGCACTAGCGGAATGAATAGTACACAACATTTCGGTGATCGATAGAGTCAGCCACCCTGAAGTTTTATGATCCATCCAAATTATCAGGCACTCGTGGGGAAGGAAAGCAGAAGCTTATCTGTTGTGATTATTGCTTCTGTTTCATTTGGTTTGTGGGGTGGATCCAATGGAAGAATTGATACTGGAGCT
TTACAAGGTTGAAGCTGTGAAATTTGGGAACTTCAAGCTGAAGAGTGGGATATCATCCCCCATATACATTGATTTGAGGCTTATAGTCTCATACCCACATCTTCTCAAGCTCGTTTCTGAGACCATCTGGAACAAGATCTCATCCCTCAAATTTGAGGTAATTTGTGGAGTCCCCTACACCGCTCTGCCCATTGCGACAT
GCATCTCACTGGCCCAATCGGTCCCCATGGTCATGAGAAGGAAGGAGGTCAAGGATTATGGCACCAAAAAATCCATTGAAGGAGTCTTCAGCCCAGGGCAAACGTGCCTGGTTATTGAAGATCTGGTGACTAGCGGAGCCTCTGTATTGGAGACTGTTGGGCCTCTTAAATCCGTGGGCCTCAATGTGAGTGATACAGTT
GTTCTCATTGACAGAGAACAGGGTGGGTCAGATAACTTGGCCAACAATGGCATCGCATTGCACTCGGCCCTTAAGCTCACACAGATGGTGGATGTGCTTGTGAAACATGGCAAGCTCTCTGCGGAGATCGCGGATTCCGTGAGGAGGTTCATTGCAGAGAACCAGACGAAGgtgcttgtcccttccccttcccctgtttc
cgttgatggtgttaggaagaggagctcttatggtgagagggctgctctctctcagAACCCAACTGGTAGAAAGCTGTTTGAGCTCATGGAGAGGAAGAAGACGAATCTATCTGTAGCAGCTGATGTCTCTACAGCCAAAGAGCTTGTCTGCCTCGCGGAAGCTGTTGGGCCTGAGATATGTATTCTGAAAACACATGTCG
ACATACTACCTGACTTCACGCCTGACTTTGGTGCTCGACTTCGTGCGATTGCAGACAAGCATGATTTCTTAATTTTCGAAGATAGGAAGTTTGCTGACATTGGAAATACAGTGACCATGCAATATGAAGGAGGAATTTTCAAAATTGTAGAGTGGGCGGATATTGTAAATGCACATGTCATTCCTGGTCCTGGCATAGTG
GAAGGGTTGAAACTGAAGGGCCTACCGCATGGAAGGGGTTTACTGCTACTTGCAGAAATGAGCTCTGCTGGAACTCTTGCCAAGGGTGAATATACATCCGCTGCAGTAACGATTGCCTCTGACCATCCTGATTTTGTAATTGGTTTCATATCCATTAATCCAGCATCTTGGCCAGAGGGACCAGGAAACCCTGCATTGAT
ACACATGACTCCAGGAGTGCAGTTGAGCAGTGGAGGAGATGCTCTAGGTCAGCAGTACAACACTCCTGCTTCAGTTATTGGTGAAAGGGGTAGTGATGTATTAATTGTTGGTCGTGGTATTATCAAAGCAAAGGACCAAGTTATGGCGGCCCACCAATACCGTATTGCGGGGTGGGATGCATACGAGAAAACCATCAAAA
TGGGAGGAGGGCTTTGAACAGATGATTATGGTGCAGAGTTTTTGCAAGTTTACTAGCTTGGTCGAAATGTGCAAGATTTCTATTAAGATTGAATTAGTGAATACTTCCATGGGAATATTGATTTTAGTGGCAGTTTTCTTTCATCAGGATCAGAGTGATTGCGTATTTGAGAACATAAATAATTTACCCCTTGTTCCATA
TGCTGCTGCTGAAAATTTACTTATGGAACTTCTCTCTGCACATGGATAAATGTTTTATGCAATGCTGCAGGTGATGATCCTAGAGGGTCTCATTATTTGCCTTTTTTTCTTTGTATTTGTCTCAAATGGACAGTAATGGTGTTCTTGAATCATTACAAATTCA