NA ----> NA
Intron 1 GTATCAATTC ... TCTAAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.32 | 12 | 15 | 20 |
| A2 | 53.33 | 7 | 8 | 8 |
| A3 | 64.71 | 6 | 6 | 16 |
| A4 | 77.78 | 2 | 6 | 8 |
| A5 | 53.85 | 3 | 4 | 3 |
| A6 | 58.33 | 25 | 32 | 38 |
| A7 | 68.54 | 14 | 33 | 28 |
| A8 | 71.22 | 20 | 40 | 59 |
| A9 | 62.03 | 15 | 18 | 31 |
| A10 | 61.7 | 9 | 11 | 18 |
>TRINITY_DN43658_c0_g1_i3 from sample A10 / Example spliced isoformGACAAATTCAAGCGCTGTTTTTCTCTCGGCAGTGCACTCATTGTGCTGCCCTAGTCTTACTAATACAGATTGTTGTGGTAGTTTCAGAAGCAACGATACTTTGATCTGCCACTTTTTTTTTCGATCCTTCTTACATAGGGTGAGCCAGAGATGATTGCAGTGTCATGGTGCATGATTGGGGGCAGAGTTGCAGTTCTGTA
CCAGAGTTGTGTCAACATTCCCAGAAGTTAGGCTACCAGCGATTGTTGCTGAGAGGCTTCACCTGTTCTGCACAATGTCACGCTGTTTACCATTCCCACCTCCTGGATACGAAAAGAACAAAAATGATGACACGGAGTTCTCAACCAAGAAGGAAAAGCACAAGGAGAAAAAACGGAAGAAAGAGAAGGACAAGGAAAAA
AAGGATAAAGAGAGGAAAGACAAAGACAAAAGTAAGGAAAAGCACAAAGAGAAAAGGTCTAAGGATCACAAGGACAAAAGCAAAGAGAAAGATAGAGACAAAGATGGAGAAAAAGATCGACTCAAGGACAGGAACATAGATGAAAAGAAGGTAGGAGAAAAGGATAGAGTCTCAGAGAAGGACATTGAAGAAAAGAAGGC
CGGAGAAAGAGAGAGACTGGACACTGATGAGAGAAAGATTGGAGAAAAGGACAGGCCCAAAGATAATGACATTGATGAAAAGACTGGAGAAAAGGACAAGGGCAAGGATGAAGTGAAGATAGGAGAAAAGGACAGGCTGAAGGACAAAGCCAAGGATGAAGTGAAGATAGGAGAAAAGGACAGGCTGAAGGACAAAGCCA
AGGACGAAGGGAAGATAGGAGAAAAGGACAGGCCAAAGGACAAGAGCAAGGATGATGTAAAGACAGGTGAAAAGGACAGGCTCAAGGATAAAGAAAGGGATGAAACTAGGATTGAATCAAAGGAGAAGATTAAAGATCTGGACAGAGATGAAAAGAAAGTTGGAGGAAAAGACAAGACCAATGATAGAGAAAGAGAGGAA
AAGAAGAAAGAAAGGGTCAAGGATAAGGACAGAGATGAAAAGAAGAATAGAGAAAAGGATAGGGACAAACTTAAGGAGAAGGATGTAGAGAAGGGGAAAATCAAGGGCAAGGATGGAAAAGAGAGAGATAAAGAGAAAGAAAGATTGAAACTAAAGGAGAGAGACAAGGAGAAGAATGGAGACAAGGATAGAGTAAAGGA
CAAGGACAAGGAGAAGAATGGAGACAAGGATAGAGTAAAGGACAAGGACAAGGAGAAGAATGGAGACAAGGATAGAGTTAAGGACAAGGACAGGGAAAAGCAAACAGATAGAGACAAGGTCAAGGTCAAACAATGGGATGCAGAAAAACACAAGTTCAGAGGCAAGGACACAGAAAGGGGCAAGGAGAAAGACAAGAATA
AGGACACAGAAAAAGACAAGAATAAGGACACAGAAAAAGACATGAACAGGGATATGATTCTAAAGAAGAGGAAATATCATGACACCAATGGTGATCTACATGACAATGACAAGAGGCCTCATAAGCTCCCTCGAATAGCACTTAGCAGTGATCATTACACAGAGAATGGGAAGAGATTACCTGAGGCAAAGGAGTTTGCT
GTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCTTCGTGTTGACAGCAGAAATAGCCAACCTGCATTACCCGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCAACGTGTTGACAGCAGAAATAGCCAACCTGCATT
GTACAATAAAAATAAAGACCAGGAAACTAACGGCAAAGTAGATAGTTGGTTACCTTCGGTTTCTATGAGGCCTTCAATTAGTAGTCATGCAGAAGCTGGTGGCCCTCTTAGGGATAAACTTGATAATGATTTGCAAGATTTAAGATATACTCTCAGTTTTCCCGTAAAAGAGGCTTGGTCAGATGTTGATGACCAGGGCT
GGTTATTTGATAGTAATCATCTCCCATTGAAGCCTAAGGCTGTAATGGAGGTTGACAAAGGGATTCCACAGGTATGGTCAGAGGCATTGCACTTAGAATCAGTTGACATACATGCATTGCCCTTTGTCATCCCTTACTGAAATTGGGCTTTCCTTTCCTCATAATGCTGAGTTTTGAAGTATCCATCAAAGGAATGGAAT
CATCATTTTGGGGTTGGGCCTTGTCTTATTATCCCCTATTCATCTTCACTTTGGGTGCATCTTCTTGTGAAAATTCTCTTTTCTTCCAGCTTCCTCCATCAATGAAGATCTGCACAGGCCAGAGTATCGTGTAAGTCCATTTAAGTCAGCTTAATTCTTCTGACATATGAGTGTATTTTAGTCATCTTAATCGATTGTAA
GAGCCGTACGTGGTCCTGCCAGATACAGGCCACTCAATTTTGATTTGTATTCTATATTCCAAAAGAAAAGTTGTAATGAGATTTCAAGGGAGAGTTTTTAGCATTCTTTTGTACTGTTCATAAGATTGGCAATTAATGAATCGATTAGAAGTTGCCAGAAAAGAAAGGCCCATTCTAGTAGCTTCAGTATCGTACTGTGT
GAAATGGTGGTTTTTTTCTTTGGATGATTGGACAATTTTATAATGAAATATGGCCTCTGTCTTGAATGTAGTTGCATATTCAAGAGCTAAATTTGAGAAATCCTTAGAGGATTGCTGCTGTGCTACATGGGATTGGGTTCTCTGAGATTCTCTGCTTGAGATTGGCATTAACGCATGGAGTTTTATTTCCTGATATTAAA
GCAAGCATTTGATGAAAAA
>TRINITY_DN43658_c0_g1_i5 from sample A10 / Example unspliced isoform:GACAAATTCAAGCGCTGTTTTTCTCTCGGCAGTGCACTCATTGTGCTGCCCTAGTCTTACTAATACAGATTGTTGTGGTAGTTTCAGAAGCAACGATACTTTGATCTGCCACTTTTTTTTTCGATCCTTCTTACATAGGGTGAGCCAGAGATGATTGCAGTGTCATGGTGCATGATTGGGGGCAGAGTTGCAGTTCTGTA
CCAGAGTTGTGTCAACATTCCCAGAAGTTAGGCTACCAGCGATTGTTGCTGAGAGGCTTCACCTGTTCTGCACAATGTCACGCTGTTTACCATTCCCACCTCCTGGATACGAAAAGAACAAAAATGATGACACGGAGTTCTCAACCAAGAAGGAAAAGCACAAGGAGAAAAAACGGAAGAAAGAGAAGGACAAGGAAAAA
AAGGATAAAGAGAGGAAAGACAAAGACAAAAGTAAGGAAAAGCACAAAGAGAAAAGGTCTAAGGATCACAAGGACAAAAGCAAAGAGAAAGATAGAGACAAAGATGGAGAAAAAGATCGACTCAAGGACAGGAACATAGATGAAAAGAAGGTAGGAGAAAAGGATAGAGTCTCAGAGAAGGACATTGAAGAAAAGAAGGC
CGGAGAAAGAGAGAGACTGGACACTGATGAGAGAAAGATTGGAGAAAAGGACAGGCCCAAAGATAATGACATTGATGAAAAGACTGGAGAAAAGGACAAGGGCAAGGATGAAGTGAAGATAGGAGAAAAGGACAGGCTGAAGGACAAAGCCAAGGATGAAGTGAAGATAGGAGAAAAGGACAGGCTGAAGGACAAAGCCA
AGGACGAAGGGAAGATAGGAGAAAAGGACAGGCCAAAGGACAAGAGCAAGGATGATGTAAAGACAGGTGAAAAGGACAGGCTCAAGGATAAAGAAAGGGATGAAACTAGGATTGAATCAAAGGAGAAGATTAAAGATCTGGACAGAGATGAAAAGAAAGTTGGAGGAAAAGACAAGACCAATGATAGAGAAAGAGAGGAA
AAGAAGAAAGAAAGGGTCAAGGATAAGGACAGAGATGAAAAGAAGAATAGAGAAAAGGATAGGGACAAACTTAAGGAGAAGGATGTAGAGAAGGGGAAAATCAAGGGCAAGGATGGAAAAGAGAGAGATAAAGAGAAAGAAAGATTGAAACTAAAGGAGAGAGACAAGGAGAAGAATGGAGACAAGGATAGAGTAAAGGA
CAAGGACAAGGAGAAGAATGGAGACAAGGATAGAGTAAAGGACAAGGACAAGGAGAAGAATGGAGACAAGGATAGAGTTAAGGACAAGGACAGGGAAAAGCAAACAGATAGAGACAAGGTCAAGGTCAAACAATGGGATGCAGAAAAACACAAGTTCAGAGGCAAGGACACAGAAAGGGGCAAGGAGAAAGACAAGAATA
AGGACACAGAAAAAGATAAGAATAAGGACACAGACAAGAATAAGGACACAGAAAAAGATAAGAATAAGGACACATGAACAGGGATATGATTCTAAAGAAGAGGAAATATCATGACACCAATGGTGATCTACATGACAATGACAAGAGGCCTCATAAGCTCCCTCGAATAGCACTTAGCAGTGATCATTACACAGAGAATG
GGAAGAGATTACCTGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCTTCGTGTTGACAGCAGAAATAGCCAACCTGCATTACCCGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCAA
CGTGTTGACAGCAGAAATAGCCAACCTGCATTGTACAATAAAAATAAAGACCAGGAAACTAACGGCAAAGTAGATAGTTGGTTACCTTCGGTTTCTATGAGGCCTTCAATTAGTAGTCATGCAGAAGCTGGTGGCCCTCTTAGGGATAAACTTGATAATGATTTGCAAGATTTAAGATATACTCTCAGTTTTCCCGTAAA
AGAGGCTTGGTCAGATGTTGATGACCAGGGCTGGTTATTTGATAGTAATCATCTCCCATTGAAGCCTAAGGCTGTAATGGAGGTTGACAAAGGGATTCCACAGGTATGGTCAGAGGCATTGCACTTAGAATCAGTTGACATACATGCATTGCCCTTTGTCATCCCTTACTGAAATTGGGCTTTCCTTTCCTCATAATGCT
GAGTTTTGAAGTATCCATCAAAGGAATGGAATCATCATTTTGGGGTTGGGCCTTGTCTTATTATCCCCTATTCATCTTCACTTTGGGTGCATCTTCTTGTGAAAATTCTCTTTTCTTCCAGgtatcaattcttacctgtcatagtaagtatacatggaatcttatttggaaaatttgtttcaaggcacttttcattcttt
gcatgtccaagttggtagatcttgcaggcttctaatttgaattttctctgaaactattagtagtctctttatataaccatcttgaagattgttctaaaccagCTTCCTCCATCAATGAAGATCTGCACAGGCCAGAGTATCGTGTAAGTCCATTTAAGTCAGCTTAATTCTTCTGACATATGAGTGTATTTTAGTCATCT
TAATCGATTGTAAGAGCCGTACGTGGTCCTGCCAGATACAGGCCACTCAATTTTGATTTGTATTCTATATTCCAAAAGAAAAGTTGTAATGAGATTTCAAGGGAGAGTTTTTAGCATTCTTTTGTACTGTTCATAAGATTGGCAATTAATGAATCGATTAGAAGTTGCCAGAAAAGAAAGGCCCATTCTAGTAGCTTCAG
TATCGTACTGTGTGAAATGGTGGTTTTTTTCTTTGGATGATTGGACAATTTTATAATGAAATATGGCCTCTGTCTTGAATGTAGTTGCATATTCAAGAGCTAAATTTGAGAAATCCTTAGAGGATTGCTGCTGTGCTACATGGGATTGGGTTCTCTGAGATTCTCTGCTTGAGATTGGCATTAACGCATGGAGTTTTATT
TCCTGATATTAAAGCAAGCATTTGATGAAAAA
Intron 2 GTATCAATTC ... AAACTATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.52 | 10 | 15 | 11 |
| A2 | 57.89 | 4 | 8 | 3 |
| A3 | 69.23 | 4 | 6 | 12 |
| A4 | 63.64 | 4 | 6 | 8 |
| A5 | 60 | 2 | 4 | 2 |
| A6 | 59.92 | 19.1 | 32 | 25 |
| A7 | 65.96 | 16 | 33 | 29 |
| A8 | 70.31 | 19 | 40 | 50 |
| A9 | 49.93 | 23.1 | 18 | 28 |
| A10 | 76.47 | 4 | 11 | 15 |
>TRINITY_DN95930_c0_g1_i1 from sample A4 / Example spliced isoformTCTACTTGCCTGTGCTTACAGACAATGACAAGAGGCCTCATAAGCTCCCTCGAATAGCACTTAGCAGTGATCATTACACAGAGAATGGGAAGAGATTACCTGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCTTCGTGTTGACAGCAGAAATAGCCAA
CCTGCATTACCCGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCAACGTGTTGACAGCAGAAATAGCCAACCTGCATTGTACAATAAAAATAAAGACCAGGAAACTAACGGCAAAGTAGATAGTTGGTTACCTTCGGTTTCTATGAGGCCTTCAATTAG
TAGTCATGCAGAAGCTGGTGGCCCTCTTAGGGATAAACTTGATAATGATTTGCAAGATTTAAGATATACTCTCAGTTTTCCCGTAAAAGAGGCTTGGTCAGATGTTGATGACCAGAGCTGGTTATTTGATAGTAATCATCTCCCATCGAAGCCTAAGGCTGTAATGGAGGTTCACAAAGGGATTCCACAGGTATGGTCAG
AGGCATTGCACTTAGAATCAGTTGACATACATGCATTGCCCTTTGTCATCCCTTACTGAAATTGGGCTTTCCTTTCCTCATAATGCTGAGTTTTGAAGTATCCATCAAAGGAATGGAATCATCATTTTGGGGTTGGGCCTTGTCTTATTATCCCCTATTCATCTTCACTTTGGGTGCATCTTCTTGTGAAAATTCTCTTT
TCTTCCAGTAGTCTCTTTATATAACCATCTTGAAGATTGTTCTAAACCAGCTTCCTCCATCAATGAAGATCTGCACAGGCCAGAGTATCGTGTAAGTCCATTTAAGTCAGCTTAATTCTTCTGACATATGAGTGTATTTTAGTCATCTTAATCGATTGTAAGAGCCGTACGTGGTCCTGCCAGATACAGGCCACTCAATT
TTGATTTGTATTCTATATTCCAAAAGAAAAGTTGTAATGAGATTTCAAGGGAGAGTTTTTAGCATTCTTTTGTACTGTTCATAAGATTGGCAATTAATGAATCGATTAGAAGTTGCCAGAAAAGAAAGGCCCATTCTAGTAGCTTCAGTATCGTACTGTGTGAAATGGTGGTTTTTTTCTTTGGATGATTGGACAATTTT
TTAATGAAATATGGC
>TRINITY_DN95930_c0_g1_i8 from sample A4 / Example unspliced isoform:TCTACTTGCCTGTGCTTACAGACAATGACAAGAGGCCTCATAAGCTCCCTCGAATAGCACTTAGCAGTGATCATTACACAGAGAATGGGAAGAGATTACCTGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCTTCGTGTTGACAGCAGAAATAGCCAA
CCTGCATTACCCGAGGCAAAGGAGTTTGCTGTTCAGCTTGCACCTAGCAATAGGAGTGGAGTGGCTGATAACATTGGCATCGAGCAACGTGTTGACAGCAGAAATAGCCAACCTGCATTGTACAATAAAAATAAAGACCAGGAAACTAACGGCAAAGTAGATAGTTGGTTACCTTCGGTTTCTATGAGGCCTTCAATTAG
TAGTCATGCAGAAGCTGGTGGCCCTCTTAGGGATAAACTTGATAATGATTTGCAAGATTTAAGATATACTCTCAGTTTTCCCGTAAAAGAGGCTTGGTCAGATGTTGATGACCAGAGCTGGTTATTTGATAGTAATCATCTCCCATCGAAGCCTAAGGCTGTAATGGAGGTTCACAAAGGGATTCCACAGGTATGGTCAG
AGGCATTGCACTTAGAATCAGTTGACATACATGCATTGCCCTTTGTCATCCCTTACTGAAATTGGGCTTTCCTTTCCTCATAATGCTGAGTTTTGAAGTATCCATCAAAGGAATGGAATCATCATTTTGGGGTTGGGCCTTGTCTTATTATCCCCTATTCATCTTCACTTTGGGTGCATCTTCTTGTGAAAATTCTCTTT
TCTTCCAGgtatcaattcttacctgtcatagtaagtatacatggaatcttatttggaaaatttgtttcaaggcacttttcattctttgcatgtccaagttggtagatcttgcaggcttctaatttgaattttctctgaaactattagTAGTCTCTTTATATAACCATCTTGAAGATTGTTCTAAACCAGCTTCCTCCATC
AATGAAGATCTGCACAGGCCAGAGTATCGTGTAAGTCCATTTAAGTCAGCTTAATTCTTCTGACATATGAGTGTATTTTAGTCATCTTAATCGATTGTAAGAGCCGTACGTGGTCCTGCCAGATACAGGCCACTCAATTTTGATTTGTATTCTATATTCCAAAAGAAAAGTTGTAATGAGATTTCAAGGGAGAGTTTTTA
GCATTCTTTTGTACTGTTCATAAGATTGGCAATTAATGAATCGATTAGAAGTTGCCAGAAAAGAAAGGCCCATTCTAGTAGCTTCAGTATCGTACTGTGTGAAATGGTGGTTTTTTTCTTTGGATGATTGGACAATTTTTTAATGAAATATGGC