sp|O80763|NRX1_ARATH ----> Probable nucleoredoxin 1

Intron 1 GTATGAATGG ... CTTGTAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	19.3	348	10	83
A2	20.19	419	1	105
A3	16.57	475.5	6	94
A4	14.08	320.5	7	52
A5	20.13	200	1	50
A6	18.9	1646.5	16	382
A7	20.34	2276	25	578
A8	20.75	1634	24	426
A9	19.43	2526.5	3	606
A10	18.37	2272.5	2	508

>TRINITY_DN44281_c4_g1_i9 from sample A6 / Example spliced isoform

AACAGTTTCTTTCGTTCTGATTCATTCGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTCCCACCGTTGTGGACGAATCCCACCAGAATTTGAGGTCTTTGCTTTGCAGTCAGGGCCGAGATTTCTTACTAAGAAACAATGGGGAAAAGATTGAATTATTCAATGTAACATACAG
GTGAAAGTTGAGGACCTAGAAGGGAAATCTTGTTGCATTAAGGGACTCATTGGAGAAAAGGTGCCGGTTTCTGAGCTTGCTGGCAAAACAGTTGCTCTTTTCTTTTATTTCAATTTCTTTGACTACAGATATAGCGAAAGCTTCACTCGGAGGGTTTTAGATGTATACGATGAGCTGAAGGAAAGAGGAGAAGCGTTTGA
GATTGTTTTGATCGAAGGTCACCGTCGTCTTAGTTTTGAATGTTTTGAAGCCGAAAACTCACGCCCCATGCCATGGCTGTGTATGCCATTTGAAGAAGCAAAAACTGAGGAGCTCCATCGGCTTTTCCGAGTAATGGACGCTCCAAATCCATAATTGGTTGTGTTTGGCCCAGACGGAAAACTTGTAACAGAAGTTGGCG
CCGGTGCTCTATTGGTGCTTGGAGCCAAAGCTTATCCCTTCACGGATAGTCACCTTGACAAAGAAATAGAAGAATTGGCTCAGAAATCACGCCCAGAAATGAAGATAATTGGGCATACTAAACGCCCACTGTTATTGACACGAACGGGGCAAGCAATATTTCACTGCAAAGGATGTCTTTTGGAAGGCCGTGGATGGTCG
TACCATTGCGATGCCTGTGGCGATCATTATCATCTCCATTGTCAAGTTAAACTCGATACTGATATGGCAATGGAAGATGAAGATGAAGAAGATGCAGATGCAGATGAAGATGGAGGTGAGATTCGTATCCTAGACGATGACGAAGCCGCTGCTTATGATGACCACGACAAACATCACATTTGGTATCCTCAAGATTGGTA
TCCTAACAGACATCAAGAACGTCCACAACAATGAAAATACATTATTCATTAGTTCGATGTTCATGTGCTTGACATTCATGAAATCAAATGCACATTAAGTATTTGCCATTTTATATACATTTTCCATGTTTTCTCTATTTTATAACTAAATCACCTCTCAAGTATTTCAGGTATCAATCTTGTCTCTTATATTAACATGG
GCATTGCATGAGTCAATTCTTTTATAATAAGATGGACATTGCATGAG

>TRINITY_DN44281_c4_g1_i8 from sample A6 / Example unspliced isoform:

AACAGTTTCTTTCGTTCTGATTCATTCGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTGAACTATGTGAGCTTGAAAATAAACAGTTTCTTTCGTTCTGATTCATTCGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTCCCACCGTTG
TGGACGAATCCCACCAGAATTTGAGGTCTTTGCTTTGCAGTCAGGGCCGAGATTTCTTACTAAGAAACAATGGGGAAAAGGTATGAATGGTACTTTCTATGTTATCATCGTTTGGTATAAAAATTGCATTAATAGATTGAATTATTCAATGTAACATACAGGTGAAAGTTGAGGACCTAGAAGGGAAATCTTGTTGCATT
AAGGGACTCATTGGAGAAAAGgtatgaatggtactttctatacattccatgttatcatcggttggtataaagattggattaatagattgaattattcaatgtaacatgcaggtgaaatattgttgttataatttgtcagccttattcttgtaacagGTGCCGGTTTCTGAGCTTGCTGGCAAAACAGTTGCTCTTTTCTT
TTATTTCAATTTCTTTGACTACAGATATAGCGAAAGCTTCACTCGGAGGGTTTTAGATGTATACGATGAGCTGAAGGAAAGAGGAGAAGCGTTTGAGATTGTTTTGATCGAAGGTCACCGTCGTCTTAGTTTTGAATGTTTTGAAGCCGAAAACTCACGCCCCATGCCATGGCTGTGTATGCCATTTGAAGAAGCAAAAA
CTGAGGAGCTCCATCGGCTTTTCCGAGTAATGGACGCTCCAAATCCATAATTGGTTGTGTTTGGCCCAGACGGAAAACTTGTAACAGAAGTTGGCGCCGGTGCTCTATTGGTGCTTGGAGCCAAAGCTTATCCCTTCACGGATAGTCACCTTGACAAAGAAATAGAAGAATTGGCTCAGAAATCACGCCCAGAAATGAAG
ATAATTGGGCATACTAAACGCCCACTGTTATTGACACGAACGGGGCAAGCAATATTTCACTGCAAAGGATGTCTTTTGGAAGGCCGTGGATGGTCGTACCATTGCGATGCCTGTGGCGATCATTATCATCTCCATTGTCAAGTTAAACTCGATACTGATATGGCAATGGAAGATGAAGATGAAGAAGATGCAGATGCAGA
TGAAGATGGAGGTGAGATTCGTATCCTAGACGATGACGAAGCCGCTGCTTATGATGACCACGACAAACATCACATTTGGTATCCTCAAGATTGGTATCCTAACAGACATCAAGAACGTCCACAACAATGAAAATACATTATTCATTAGTTCGATGTTCATGTGCTTGACATTCATGAAATCAAATGCACATTAAGTATTT
GCCATTTTATATACATTTTCCATGTTTTCTCTATTTTATAACTAAATCACCTCTCAAGTATTTCAGGTATCAATCTTGTCTCTTATATTAACATGGGCATTGCATGAGTCAATTCTTTTATAATAAGATGGACATTGCATGAG

Intron 2 GTATGAATGG ... GGATTAATAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	35.48	260	143	2.5
A2	35.45	274	150.5	10
A3	31.48	346	159	7
A4	33.51	248	125	4
A5	28.57	135	54	1
A6	30.52	1070	470	21.5
A7	32.36	1350	646	32
A8	32.23	1105	525.5	25.5
A9	33.59	1851	936	19
A10	31.81	1450	676.5	11.5

>TRINITY_DN44281_c4_g1_i9 from sample A6 / Example spliced isoform

AACAGTTTCTTTCGTTCTGATTCATTCGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTCCCACCGTTGTGGACGAATCCCACCAGAATTTGAGGTCTTTGCTTTGCAGTCAGGGCCGAGATTTCTTACTAAGAAACAATGGGGAAAAGATTGAATTATTCAATGTAACATACAG
GTGAAAGTTGAGGACCTAGAAGGGAAATCTTGTTGCATTAAGGGACTCATTGGAGAAAAGGTGCCGGTTTCTGAGCTTGCTGGCAAAACAGTTGCTCTTTTCTTTTATTTCAATTTCTTTGACTACAGATATAGCGAAAGCTTCACTCGGAGGGTTTTAGATGTATACGATGAGCTGAAGGAAAGAGGAGAAGCGTTTGA
GATTGTTTTGATCGAAGGTCACCGTCGTCTTAGTTTTGAATGTTTTGAAGCCGAAAACTCACGCCCCATGCCATGGCTGTGTATGCCATTTGAAGAAGCAAAAACTGAGGAGCTCCATCGGCTTTTCCGAGTAATGGACGCTCCAAATCCATAATTGGTTGTGTTTGGCCCAGACGGAAAACTTGTAACAGAAGTTGGCG
CCGGTGCTCTATTGGTGCTTGGAGCCAAAGCTTATCCCTTCACGGATAGTCACCTTGACAAAGAAATAGAAGAATTGGCTCAGAAATCACGCCCAGAAATGAAGATAATTGGGCATACTAAACGCCCACTGTTATTGACACGAACGGGGCAAGCAATATTTCACTGCAAAGGATGTCTTTTGGAAGGCCGTGGATGGTCG
TACCATTGCGATGCCTGTGGCGATCATTATCATCTCCATTGTCAAGTTAAACTCGATACTGATATGGCAATGGAAGATGAAGATGAAGAAGATGCAGATGCAGATGAAGATGGAGGTGAGATTCGTATCCTAGACGATGACGAAGCCGCTGCTTATGATGACCACGACAAACATCACATTTGGTATCCTCAAGATTGGTA
TCCTAACAGACATCAAGAACGTCCACAACAATGAAAATACATTATTCATTAGTTCGATGTTCATGTGCTTGACATTCATGAAATCAAATGCACATTAAGTATTTGCCATTTTATATACATTTTCCATGTTTTCTCTATTTTATAACTAAATCACCTCTCAAGTATTTCAGGTATCAATCTTGTCTCTTATATTAACATGG
GCATTGCATGAGTCAATTCTTTTATAATAAGATGGACATTGCATGAG

>TRINITY_DN44281_c4_g1_i8 from sample A6 / Example unspliced isoform:

AACAGTTTCTTTCGTTCTGATTCATTCGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTGAACTATGTGAGCTTGAAAATAAACAGTTTCTTTCGTTCTGATTCATTCGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTCCCACCGTTG
TGGACGAATCCCACCAGAATTTGAGGTCTTTGCTTTGCAGTCAGGGCCGAGATTTCTTACTAAGAAACAATGGGGAAAAGgtatgaatggtactttctatgttatcatcgtttggtataaaaattgcattaatagATTGAATTATTCAATGTAACATACAGGTGAAAGTTGAGGACCTAGAAGGGAAATCTTGTTGCATT
AAGGGACTCATTGGAGAAAAGGTATGAATGGTACTTTCTATACATTCCATGTTATCATCGGTTGGTATAAAGATTGGATTAATAGATTGAATTATTCAATGTAACATGCAGGTGAAATATTGTTGTTATAATTTGTCAGCCTTATTCTTGTAACAGGTGCCGGTTTCTGAGCTTGCTGGCAAAACAGTTGCTCTTTTCTT
TTATTTCAATTTCTTTGACTACAGATATAGCGAAAGCTTCACTCGGAGGGTTTTAGATGTATACGATGAGCTGAAGGAAAGAGGAGAAGCGTTTGAGATTGTTTTGATCGAAGGTCACCGTCGTCTTAGTTTTGAATGTTTTGAAGCCGAAAACTCACGCCCCATGCCATGGCTGTGTATGCCATTTGAAGAAGCAAAAA
CTGAGGAGCTCCATCGGCTTTTCCGAGTAATGGACGCTCCAAATCCATAATTGGTTGTGTTTGGCCCAGACGGAAAACTTGTAACAGAAGTTGGCGCCGGTGCTCTATTGGTGCTTGGAGCCAAAGCTTATCCCTTCACGGATAGTCACCTTGACAAAGAAATAGAAGAATTGGCTCAGAAATCACGCCCAGAAATGAAG
ATAATTGGGCATACTAAACGCCCACTGTTATTGACACGAACGGGGCAAGCAATATTTCACTGCAAAGGATGTCTTTTGGAAGGCCGTGGATGGTCGTACCATTGCGATGCCTGTGGCGATCATTATCATCTCCATTGTCAAGTTAAACTCGATACTGATATGGCAATGGAAGATGAAGATGAAGAAGATGCAGATGCAGA
TGAAGATGGAGGTGAGATTCGTATCCTAGACGATGACGAAGCCGCTGCTTATGATGACCACGACAAACATCACATTTGGTATCCTCAAGATTGGTATCCTAACAGACATCAAGAACGTCCACAACAATGAAAATACATTATTCATTAGTTCGATGTTCATGTGCTTGACATTCATGAAATCAAATGCACATTAAGTATTT
GCCATTTTATATACATTTTCCATGTTTTCTCTATTTTATAACTAAATCACCTCTCAAGTATTTCAGGTATCAATCTTGTCTCTTATATTAACATGGGCATTGCATGAGTCAATTCTTTTATAATAAGATGGACATTGCATGAG

Intron 3 GTATGAATGG ... TAACATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	23.76	374	119.7	26.7
A2	23	449.7	135.3	39
A3	20.98	529.7	141.7	44.7
A4	21.5	409	112.3	28
A5	16.43	248.3	49	14.7
A6	19.25	1699.3	410	129
A7	19.72	2349	580.7	200.3
A8	21.16	1706.3	463.3	143.7
A9	21.96	2832.7	809.7	201
A10	19.72	2439.7	603.3	171.3

>TRINITY_DN117902_c0_g1_i6 from sample A3 / Example spliced isoform

GGCGGGGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTGAACTATGTGAGCTTGAAAATACTCCCACCGTTGTGGACGAATCCCACCAGAATTTGAGGTCTTTGCTTTGCAGTCCGGACCGAGATTTCTTACTAAGAAACAATGGAGAAAAGGTTGAGGACCTAGAAGAGAAATC
TTGTTGCATTAAAGGACACATTGGAGAAAAGGTGCCGGTTTCTGAGCTTGCTGGCAAAACAGTTGCTCTGTTCTTTTATTTCAGTTTCTTTGACTACAGATATAGCGAAAGCTTCACTCGGAAGGTTTTAGATGTATACGATGAGCTGAAGGAAAGAGGAGAAGCGTTTGAGATTGTTTTGATCGAAGGTCACCGTCGTC
GTAGTTTTGATAGTTTTGAAGCCGAAAACTCACGCCCCATGCCATGGCTGTGTATGCCATTTGAAGAAGCGAAAACTGAGGAGCTCCATCGGCTTTTCCGAGTAATGGACGATCCAAATCCACAATTGGTTGTGTTTGGCCCAGATGGAAAACTTGTAACAGAAGTTGGCGCCGGTGCTCTATTGGTGCTTGGAGCCAAA
GCTTATCCCTTCACGGATAGTCACCTTGACAAACAAATAGAAGAATTGGCTCAGAAATCACGCCCAGAAATGAAGATAATTGGGCATACTAAACGCCCACTGTTATTGACACGAACGGGGCAAGCAATATTTCACTGCAAAGGATGTCTTTTGGAAGGCCGTGGATGGTCGTACCATTGCGATGCCTGTGGCGATCATTA
TCATCTCCATTGTCAAGTTAAACTCGATACTGATATGGCAATGGAAGATGAAGATGAAGATGAAGAAGATGCAGATGCAGATGAAGATGGAGGTGAGATTCGTATCCTAGACGATGACGAAGCCGCTGCTTATGATGACGACGACAAACATCACATTTGGTATCCTCAAGATTGGTATCCTAACAGACATCAAGAACGTC
CACAACCATGAAAATACATTATTCATTAGTTCGATGTTCATGTGCTTGACATTCATGAAATCAAATGCACATTAAGTATTTGCCATTTTATATACATTTTCCATGTTTTCTCTATTTTATAACTAAATCACCTCTCAAGTATTTCAGGTATCAATCTTGTCTCTTATATTAACATGGGCATTGCATGAGTCAATTCTTTT
ATAATAA

>TRINITY_DN117902_c0_g1_i4 from sample A3 / Example unspliced isoform:

GGCGGGGTGGTGGAGCTGACAAGCTTTGACAGAAACAAGAAGAAGCAGGCATACAAAATGGCTGAACTATGTGAGCTTGAAAATACTCCCACCGTTGTGGACGAATCCCACCAGAATTTGAGGTCTTTGCTTTGCAGTCCGGACCGAGATTTCTTACTAAGAAACAATGGAGAAAAGgtatgaatggtactttctatgtt
atcatcgtttggtttaaaaattgcattaatagattgaactattcaatgtaacatacagGTTGAGGACCTAGAAGAGAAATCTTGTTGCATTAAAGGACACATTGGAGAAAAGGTGCCGGTTTCTGAGCTTGCTGGCAAAACAGTTGCTCTGTTCTTTTATTTCAGTTTCTTTGACTACAGATATAGCGAAAGCTTCACTC
GGAAGGTTTTAGATGTATACGATGAGCTGAAGGAAAGAGGAGAAGCGTTTGAGATTGTTTTGATCGAAGGTCACCGTCGTCGTAGTTTTGATAGTTTTGAAGCCGAAAACTCACGCCCCATGCCATGGCTGTGTATGCCATTTGAAGAAGCGAAAACTGAGGAGCTCCATCGGCTTTTCCGAGTAATGGACGATCCAAAT
CCACAATTGGTTGTGTTTGGCCCAGATGGAAAACTTGTAACAGAAGTTGGCGCCGGTGCTCTATTGGTGCTTGGAGCCAAAGCTTATCCCTTCACGGATAGTCACCTTGACAAACAAATAGAAGAATTGGCTCAGAAATCACGCCCAGAAATGAAGATAATTGGGCATACTAAACGCCCACTGTTATTGACACGAACGGG
GCAAGCAATATTTCACTGCAAAGGATGTCTTTTGGAAGGCCGTGGATGGTCGTACCATTGCGATGCCTGTGGCGATCATTATCATCTCCATTGTCAAGTTAAACTCGATACTGATATGGCAATGGAAGATGAAGATGAAGATGAAGAAGATGCAGATGCAGATGAAGATGGAGGTGAGATTCGTATCCTAGACGATGACG
AAGCCGCTGCTTATGATGACGACGACAAACATCACATTTGGTATCCTCAAGATTGGTATCCTAACAGACATCAAGAACGTCCACAACCATGAAAATACATTATTCATTAGTTCGATGTTCATGTGCTTGACATTCATGAAATCAAATGCACATTAAGTATTTGCCATTTTATATACATTTTCCATGTTTTCTCTATTTTA
TAACTAAATCACCTCTCAAGTATTTCAGGTATCAATCTTGTCTCTTATATTAACATGGGCATTGCATGAGTCAATTCTTTTATAATAA