NA ----> NA
Intron 1 GTGAGCTTGC ... TTGACTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.72 | 138.3 | 43 | 9 |
| A2 | 19.17 | 118.3 | 28 | 10.8 |
| A3 | 12.89 | 148.9 | 22 | 14.3 |
| A4 | 24.11 | 151.2 | 48 | 11.6 |
| A5 | 18.08 | 77.1 | 17.1 | 2.4 |
| A6 | 12.3 | 1060.8 | 148.2 | 49.9 |
| A7 | 13.09 | 695.4 | 104.6 | 27.8 |
| A8 | 12.4 | 736.6 | 103.9 | 41.6 |
| A9 | 11.2 | 819.8 | 103.2 | 30.8 |
| A10 | 12.12 | 640.4 | 88.2 | 27.8 |
>TRINITY_DN114999_c7_g1_i5 from sample A1 / Example spliced isoformGGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGA
GCCAGAGGATGCAGTGCATGTAGGAGACGATCGTCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAAGATTGGTGTAGATGTCTGAAAGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATAC
TGGGTTCAGCGAGAATTACAAGCTTCATGGGCAGATGTTTGGAAAATTTTCATGCAATGTAAATTGAGTCAACTACAGGAATTGAGTCATTTCAGTTAACTGGACGGTTCAATGTACTTTCGTCTTGTATATACATGTATATTGCACTGACACAAGCAAGAAAATGAAGGCTGATTTCTGCCCAATCTCTCCGCACTGTG
TTGGTTTTCTCTGTAACATAAAGGATACATTTCTTTCCTTTGTATCTTTGTTATTTTACATAGTTCTTCATGTAAGTGCAGTAATTTTTGAGATTTATACTCTGTTAAGTTGTTAACACATATATTCATGCTTTCTACAAAATTACAAATATCCTGTAACCTGAGCTGGGACCCGACTTTTTAACAACTATGACTCTATC
ATCATATTTTCCTTTTAGAAAAAAA
>TRINITY_DN114999_c7_g1_i7 from sample A1 / Example unspliced isoform:GGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGGTATTCACACTTGTGGTCAATGACATTAATGTGCATTTATTTGTTTAAAATGTTTATTTTGT
TGCTTAAAACCGTTGTTTATATTATTTTATAAATATATTGTTGTATGGGTCATGAAAGATTTACTATGTAAAATTTTGGTTTCTGCTTCTGGGGCTTTGGAATAGGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGAGCCAGAGGATGCAGTGCATGTAGGAGACGATCG
TCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGgtgagcctgctatcattttttcacattgttgtctatttgtggtttttaatacaatcaacaattgtaaatacatgagaacattgactgcagGTTGCCCAAAAGATTGGTGTAGATGTCTGAA
AGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATA
Intron 2 GTATTCACAC ... TTTGGAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.89 | 160 | 32 | 63 |
| A2 | 18.5 | 152 | 37 | 32 |
| A3 | 26.01 | 165 | 55 | 61 |
| A4 | 17.28 | 134 | 17 | 39 |
| A5 | 24 | 57 | 15 | 21 |
| A6 | 18.52 | 805 | 172 | 194 |
| A7 | 20.18 | 619 | 166 | 147 |
| A8 | 17.3 | 588 | 124 | 122 |
| A9 | 18.47 | 576 | 142 | 119 |
| A10 | 20.43 | 481 | 156 | 91 |
>TRINITY_DN114999_c7_g1_i5 from sample A1 / Example spliced isoformGGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGA
GCCAGAGGATGCAGTGCATGTAGGAGACGATCGTCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAAGATTGGTGTAGATGTCTGAAAGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATAC
TGGGTTCAGCGAGAATTACAAGCTTCATGGGCAGATGTTTGGAAAATTTTCATGCAATGTAAATTGAGTCAACTACAGGAATTGAGTCATTTCAGTTAACTGGACGGTTCAATGTACTTTCGTCTTGTATATACATGTATATTGCACTGACACAAGCAAGAAAATGAAGGCTGATTTCTGCCCAATCTCTCCGCACTGTG
TTGGTTTTCTCTGTAACATAAAGGATACATTTCTTTCCTTTGTATCTTTGTTATTTTACATAGTTCTTCATGTAAGTGCAGTAATTTTTGAGATTTATACTCTGTTAAGTTGTTAACACATATATTCATGCTTTCTACAAAATTACAAATATCCTGTAACCTGAGCTGGGACCCGACTTTTTAACAACTATGACTCTATC
ATCATATTTTCCTTTTAGAAAAAAA
>TRINITY_DN114999_c7_g1_i1 from sample A1 / Example unspliced isoform:GGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGgtattcacacttgtggtcaatgacattaatgtgcatttatttgtttaaaatgtttattttgt
tgcttaaaaccgttgtttatattattttataaatatattgttgtatgggtcatgaaagatttactatgtaaaattttggtttctgcttctggggctttggaatagGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGAGCCAGAGGATGCAGTGCATGTAGGAGACGATCG
TCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAAGATTGGTGTAGATGTCTGAAAGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATACTGGGTAGGTATTGTTTGGTCCTATCAAAGCACT
CGTTGTATTAGGCAAATCAAATCTTACGAGTATGTTCTTCATTTGTTCATCATGATTCATGCTATTAAGATCTGGAAGATGTAGGGAAATTTGAAACCAACTTTATTCCTTTTTCCATGACTATTTGAAGGGGGAATTCTGAAACAACTTATCTTCCAGACTGTAAAGAGAACTGTGCGTAGAAGACAACAATTCTTGGA
AATCGCTGAAACTAACTGAACAATTAAATGATGGACAAGCTTTACAGTAGAATTAGCATGTACAAGTAATACTGAGCGAAGGAGTTTTATCAAATTGTGTTTGTTTAATTTTCCAGGATTCGAGCTTTTTGGTGCCCAGGTTCAGTTCATTTTTATGTCTGCCATTTGTCCTTTTGTTTTATACGTATATTGACCTTCCC
GAGTACCTGCTTGTTGCTTAAAGACGATGTACATATGTTTCTTTTCCCATTGGTTAAAACTTAAATTCAATATTTAGGCTCTTTTCTGTGTAGATTTGGCAGGAAACACAGATTGTCCTACTACATTACAGGACTGCAATAATTTTTCTGTTGAATCATATGTTCAATCTAGATAAACATATTGGATTTTAAGCTTGGTG
AGCTTGGTAACTTGTTCCATAATTATGAAGAGTAGTCAACGTGAAGGAAGCTGCTTAACACCCTTATTAGGTGGCTTTTTGATAGGAATTAATATGTAAATAATTGTCCTTAGTCTTAACAATAAACATTTATTGCACCAAGAGGAGTGAGGTGCTCTACAACCCAGTATGGGGGAGATGTTGTCACGCCA
Intron 3 GTAGATATTT ... GTTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.75 | 94 | 19.7 | 16.8 |
| A2 | 13.67 | 128 | 24.2 | 21.9 |
| A3 | 10.22 | 117 | 20.4 | 13.6 |
| A4 | 12.75 | 111 | 31.1 | 16.9 |
| A5 | 17.65 | 55 | 7 | 12.4 |
| A6 | 9.07 | 379 | 64.9 | 40.4 |
| A7 | 10.72 | 304 | 57.3 | 38.1 |
| A8 | 7.4 | 214 | 40.1 | 18 |
| A9 | 9.46 | 352 | 52.8 | 39.2 |
| A10 | 8.26 | 326 | 62.4 | 30.6 |
>TRINITY_DN114999_c7_g1_i5 from sample A1 / Example spliced isoformGGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGA
GCCAGAGGATGCAGTGCATGTAGGAGACGATCGTCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAAGATTGGTGTAGATGTCTGAAAGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATAC
TGGGTTCAGCGAGAATTACAAGCTTCATGGGCAGATGTTTGGAAAATTTTCATGCAATGTAAATTGAGTCAACTACAGGAATTGAGTCATTTCAGTTAACTGGACGGTTCAATGTACTTTCGTCTTGTATATACATGTATATTGCACTGACACAAGCAAGAAAATGAAGGCTGATTTCTGCCCAATCTCTCCGCACTGTG
TTGGTTTTCTCTGTAACATAAAGGATACATTTCTTTCCTTTGTATCTTTGTTATTTTACATAGTTCTTCATGTAAGTGCAGTAATTTTTGAGATTTATACTCTGTTAAGTTGTTAACACATATATTCATGCTTTCTACAAAATTACAAATATCCTGTAACCTGAGCTGGGACCCGACTTTTTAACAACTATGACTCTATC
ATCATATTTTCCTTTTAGAAAAAAA
>TRINITY_DN114999_c7_g1_i2 from sample A1 / Example unspliced isoform:GGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGgtagatatttctcattaattttgattttcgattttttgtt
tctatgaaaatcaaggtcctaccgattaagtaggtgttaatggagcaaagttgcacacataacctagcaaacacgtttttgcacttttaaattcctttcttatctttgcatttgtatatatccgtggaatataagatctggggaaatgagatgttaatttttgacagaacagaaaataaccaattggggtttgagatatc
aggtgttgctcatgtttttgtgttgggtgcaaattgttaatgcagATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACTCGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGGTATGCATGCATTTATAAACAGTAATATCCTTCTATTCATAATCTATC
CATGGGCCTCGTTGGTTATGGTTTAGTTACTGGTTGGGCTAGAAAACAACATACATGCTTTTTAATTTCAAACTCTGTTTTGGCAAGCAGCAGGACTACTTTTTATAACAGGATTTTTGTATCACTTCAATCTTTAAAGCTCTTCTGGTTGTATGGAATTTGAGGCGTTGGGGATTAATGCTTGATTTGTTCCAGATTCA
TGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGTATTCATTTACATTTATTTTTTCTGCTCAGACTAAGACTAGACCCTTTTCTTGATTGCGTTCCAACTCTTCTTGACTATTATACATTATAAAGGG
TTTTCTGTATTGGTTCAATCCCTCTATTCCTCTCTTTTTATCTTCCTGCACTGTTGATAGCCTAAATTTATACTCGAGTAAGACTAGATCATTTTCTTCATTGTGTTCCAATTCTTCCTGGCTATCCTTTTATACATGATAGAGGGTTTTAACTTTTCTTTGATTGGTTCAACCCTTCTATTAATCCCTTTCTATCTTCC
TGCACCGTCAATAGCCTAGATTTATTACAGTTTAGGAGATTCATCAAGCTCTTCTTATTTTTCTATTTGTACCGGCCTTACTCTTAGGTCCTAACAACCATTTTTGGGTCATTTGTGACATGAATATAATTTTATTACATTTCTCTCCGTTTCATTTCTATTTAATGAATCTTATCCTCTTATTTTGTTTTAGAAATGAT
CGGGCACATGTGATTGCCCAACGTGGGCTTTTCTGTTGATTTGAGATGGGTGTTTTGGCTTTGTAGGCTTGGCATATTTGTGACCCAGAAGCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTG
GTTTGACGCATTGGCTGTATCAGCTGAGGT
Intron 4 GTATTCATTT ... GGCTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 38.89 | 110 | 9 | 70 |
| A2 | 37.01 | 97 | 8 | 57 |
| A3 | 35.38 | 137 | 5 | 75 |
| A4 | 31.91 | 96 | 3 | 45 |
| A5 | 38.94 | 69 | 2 | 44 |
| A6 | 33.78 | 447 | 11 | 228 |
| A7 | 38.06 | 376 | 7 | 231 |
| A8 | 34.52 | 313 | 6 | 165 |
| A9 | 34.11 | 394 | 12 | 204 |
| A10 | 37.22 | 393 | 6 | 233 |
>TRINITY_DN114999_c7_g1_i5 from sample A1 / Example spliced isoformGGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGA
GCCAGAGGATGCAGTGCATGTAGGAGACGATCGTCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAAGATTGGTGTAGATGTCTGAAAGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATAC
TGGGTTCAGCGAGAATTACAAGCTTCATGGGCAGATGTTTGGAAAATTTTCATGCAATGTAAATTGAGTCAACTACAGGAATTGAGTCATTTCAGTTAACTGGACGGTTCAATGTACTTTCGTCTTGTATATACATGTATATTGCACTGACACAAGCAAGAAAATGAAGGCTGATTTCTGCCCAATCTCTCCGCACTGTG
TTGGTTTTCTCTGTAACATAAAGGATACATTTCTTTCCTTTGTATCTTTGTTATTTTACATAGTTCTTCATGTAAGTGCAGTAATTTTTGAGATTTATACTCTGTTAAGTTGTTAACACATATATTCATGCTTTCTACAAAATTACAAATATCCTGTAACCTGAGCTGGGACCCGACTTTTTAACAACTATGACTCTATC
ATCATATTTTCCTTTTAGAAAAAAA
>TRINITY_DN114999_c7_g1_i2 from sample A1 / Example unspliced isoform:GGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGGTAGATATTTCTCATTAATTTTGATTTTCGATTTTTTGTT
TCTATGAAAATCAAGGTCCTACCGATTAAGTAGGTGTTAATGGAGCAAAGTTGCACACATAACCTAGCAAACACGTTTTTGCACTTTTAAATTCCTTTCTTATCTTTGCATTTGTATATATCCGTGGAATATAAGATCTGGGGAAATGAGATGTTAATTTTTGACAGAACAGAAAATAACCAATTGGGGTTTGAGATATC
AGGTGTTGCTCATGTTTTTGTGTTGGGTGCAAATTGTTAATGCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACTCGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGGTATGCATGCATTTATAAACAGTAATATCCTTCTATTCATAATCTATC
CATGGGCCTCGTTGGTTATGGTTTAGTTACTGGTTGGGCTAGAAAACAACATACATGCTTTTTAATTTCAAACTCTGTTTTGGCAAGCAGCAGGACTACTTTTTATAACAGGATTTTTGTATCACTTCAATCTTTAAAGCTCTTCTGGTTGTATGGAATTTGAGGCGTTGGGGATTAATGCTTGATTTGTTCCAGATTCA
TGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGgtattcatttacatttattttttctgctcagactaagactagacccttttcttgattgcgttccaactcttcttgactattatacattataaaggg
ttttctgtattggttcaatccctctattcctctctttttatcttcctgcactgttgatagcctaaatttatactcgagtaagactagatcattttcttcattgtgttccaattcttcctggctatccttttatacatgatagagggttttaacttttctttgattggttcaacccttctattaatccctttctatcttcc
tgcaccgtcaatagcctagatttattacagtttaggagattcatcaagctcttcttatttttctatttgtaccggccttactcttaggtcctaacaaccatttttgggtcatttgtgacatgaatataattttattacatttctctccgtttcatttctatttaatgaatcttatcctcttattttgttttagaaatgat
cgggcacatgtgattgcccaacgtgggcttttctgttgatttgagatgggtgttttggctttgtagGCTTGGCATATTTGTGACCCAGAAGCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTG
GTTTGACGCATTGGCTGTATCAGCTGAGGT
Intron 5 GTATGCATGC ... TTTGTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10 | 99 | 13 | 9 |
| A2 | 11.7 | 117 | 15 | 16 |
| A3 | 7.12 | 117.5 | 11 | 7 |
| A4 | 2.25 | 87 | 3 | 1 |
| A5 | 7.2 | 58 | 3 | 6 |
| A6 | 2.17 | 361 | 6 | 10 |
| A7 | 2.35 | 229 | 7 | 4 |
| A8 | 2.8 | 226 | 8 | 5 |
| A9 | 2.47 | 316 | 8 | 8 |
| A10 | 3.39 | 271 | 7 | 12 |
>TRINITY_DN114999_c7_g1_i5 from sample A1 / Example spliced isoformGGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACT
CGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGATTCATGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGCTTGGCATATTTGTGACCCAGAA
GCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTGGTTTGACGCATTGGCTGTATCAGCTGAGGTGGAAGCAGAGAAGCCCAACCCCACAATATTCTGGAAGGCATGCGAATTTCTAGGAGTAGA
GCCAGAGGATGCAGTGCATGTAGGAGACGATCGTCGCAATGACATTTGGGGTGCCAGAGATGCGGGCTGTGATGCTTGGCTTTGGGGTGCTGATGTACACTCTTTTAAAGAGGTTGCCCAAAAGATTGGTGTAGATGTCTGAAAGTAATGATACTGGCATGACTCTGCAATACAATTCCATTCATCAACCTGTATCATAC
TGGGTTCAGCGAGAATTACAAGCTTCATGGGCAGATGTTTGGAAAATTTTCATGCAATGTAAATTGAGTCAACTACAGGAATTGAGTCATTTCAGTTAACTGGACGGTTCAATGTACTTTCGTCTTGTATATACATGTATATTGCACTGACACAAGCAAGAAAATGAAGGCTGATTTCTGCCCAATCTCTCCGCACTGTG
TTGGTTTTCTCTGTAACATAAAGGATACATTTCTTTCCTTTGTATCTTTGTTATTTTACATAGTTCTTCATGTAAGTGCAGTAATTTTTGAGATTTATACTCTGTTAAGTTGTTAACACATATATTCATGCTTTCTACAAAATTACAAATATCCTGTAACCTGAGCTGGGACCCGACTTTTTAACAACTATGACTCTATC
ATCATATTTTCCTTTTAGAAAAAAA
>TRINITY_DN114999_c7_g1_i2 from sample A1 / Example unspliced isoform:GGAAGTGGGTCCCACCGAAGGAATCAACTCGTACTTTACACTTTATAAAATGGAGTTCATCGTTGGATGATATCGTGAGAGCAGAGCATAGAAGCATATGATATATAACCAGCCTGGGAGCCTAGCAACGAAGGAAGGAGTCGCACAAATTGTTTTGCAAAACAGGAAAGATGATTTCGGTTTTTACCAGAGGAGGAAGA
AGATTTGTTAAAGAAGCAGCAGCAGCAGTGGCCATTAGAATGAGTGCCATGGCTCCTGCAAGTGGAGTTGGAGGTCTCCAGTTCTCTGCTTCTGCAAATGGAAGCTGCTCAATCCCACAATTAGTATTACAACGACAACAAATTGATATATCAAGAAGAAGAAGAGGAATGGAAGGAGGCAGAAGATATCTGTCGTCAAT
GGCATCCGCATCGCCTACAGAGACAAAGGAGATGTCTGGTGGTGGAGAACAAGAATGGTACATCCAGTATCGGAGATCATTACACGGAGGGCTTACACACAAAGCTCTCTTGGTGGATGCCGTTGGCACTCTTGTTCTCCCATCCCAGCCAGCTGCTCAGGTAGATATTTCTCATTAATTTTGATTTTCGATTTTTTGTT
TCTATGAAAATCAAGGTCCTACCGATTAAGTAGGTGTTAATGGAGCAAAGTTGCACACATAACCTAGCAAACACGTTTTTGCACTTTTAAATTCCTTTCTTATCTTTGCATTTGTATATATCCGTGGAATATAAGATCTGGGGAAATGAGATGTTAATTTTTGACAGAACAGAAAATAACCAATTGGGGTTTGAGATATC
AGGTGTTGCTCATGTTTTTGTGTTGGGTGCAAATTGTTAATGCAGATATACAGGAATATCGGTCTTAAGTATGGGGTCAGTTACTCGGAGGACGAAATTCTGAGTCGATACCGTTGGGCTTATCAGCAACCTTGGCCTAACACTCGCTTAAGgtatgcatgcatttataaacagtaatatccttctattcataatctatc
catgggcctcgttggttatggtttagttactggttgggctagaaaacaacatacatgctttttaatttcaaactctgttttggcaagcagcaggactactttttataacaggatttttgtatcacttcaatctttaaagctcttctggttgtatggaatttgaggcgttggggattaatgcttgatttgttccagATTCA
TGGACGACGCCAGACCTTTTTGGCAGTTTGTTGTACAGAATGCTACGGGCTGCTCTGATTCTCGATATTTTGAGGAGCTTTATGAGTATTATACTACGGATCAGGTATTCATTTACATTTATTTTTTCTGCTCAGACTAAGACTAGACCCTTTTCTTGATTGCGTTCCAACTCTTCTTGACTATTATACATTATAAAGGG
TTTTCTGTATTGGTTCAATCCCTCTATTCCTCTCTTTTTATCTTCCTGCACTGTTGATAGCCTAAATTTATACTCGAGTAAGACTAGATCATTTTCTTCATTGTGTTCCAATTCTTCCTGGCTATCCTTTTATACATGATAGAGGGTTTTAACTTTTCTTTGATTGGTTCAACCCTTCTATTAATCCCTTTCTATCTTCC
TGCACCGTCAATAGCCTAGATTTATTACAGTTTAGGAGATTCATCAAGCTCTTCTTATTTTTCTATTTGTACCGGCCTTACTCTTAGGTCCTAACAACCATTTTTGGGTCATTTGTGACATGAATATAATTTTATTACATTTCTCTCCGTTTCATTTCTATTTAATGAATCTTATCCTCTTATTTTGTTTTAGAAATGAT
CGGGCACATGTGATTGCCCAACGTGGGCTTTTCTGTTGATTTGAGATGGGTGTTTTGGCTTTGTAGGCTTGGCATATTTGTGACCCAGAAGCGGGTAAAGTATTTGAAGCACTGAGGAGAGCTGGAGTAAAGCTAGCAGTAGTTTCGAATTTTGATACTCGCCTAAGGCCATTATTGCAGGCTCTCAAGTGTGAACACTG
GTTTGACGCATTGGCTGTATCAGCTGAGGT