NA ----> NA
Intron 1 GTGAGAAATT ... TTACTGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 4 | 0 | 1 |
| A2 | 50 | 1 | 0 | 1 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 25 | 6 | 2 | 2 |
| A5 | -1 | 0 | 2 | 0 |
| A6 | 57.14 | 3 | 0 | 4 |
| A7 | 55.56 | 8 | 0 | 10 |
| A8 | 40 | 3 | 1 | 2 |
| A9 | 66.67 | 2 | 0 | 4 |
| A10 | 50 | 3 | 2 | 3 |
>TRINITY_DN38786_c0_g1_i3 from sample A9 / Example spliced isoformTGACAATGGAAGTTACTGCGTTTCCCTTTTCACTCACTGTCGCTCCTTCCTACCTGGTTGTTGGTTGGAATATAAAGCTGCATCCAACCAATTAGGAACAAACAATTCATGCAATTACCATATCACAGCAAGACTTGAAGTCATGGGAAATTTAACCCAATGGCCCCATGATCACGACATTCAAACCTGATTTTTTGGGA
TCAGAACACTCAAGCTTGATTTTTTTAGGTGTGATGGGAACTTCATGCCATATTTTCGGAGCTACCACATCTATACGTCCGTATCAATGAAAACATATCAAGCCGTGTGAGAGCTTTCTGCTCGTCAAAGTATTAGTTGAGATTGACCTTAAAGATTTGAAAAATTATTCAAGTCAAGCAAAACTTTGATCATAATGACA
AAACCTGGTATTTTCTGAGACATTTGTGACTCTACGACAAGGAAATAATGTCAATTCTTGATATTTGTATCGTATGAAAATTCAATGAATTACATTGCAATTATTCTATACGATGCTTGACTCTGATCTTTCGAGGAAGCAGCAGTTGGGTCAAAGGCGTGTAGAAGAGTCATGGCTACGTTTGATTTCTCCAAATCACA
CCCACACATCACATGAAACAGGCAAAAGTCGATGAAATGTCAATGCCGTGGCGTTCACCCAGCTGACAAACTCAGGAAAATGCAAACAACCCCTGGCGAACGGCGAAGACCGCATTGCTCATAGGGCTTCTAAATTGACAATAAGTTCACGCAGCTCACTCATATGATATTCATATACGAATTCAACTTTGGTTCCCCTG
TTGGGGGAGGGATTTAAATAGAATCTTGCTGTTAAAATTTAGATTATAATGGATTCTGATCATCATAATCAGGAAGGGCCTGAAAAGCCAATGAACGGCTGCAATAACAATGTGATCATCAAGTCCAATCAAGAAGGTAAAGATATTCAAGAAGGTAAAGATATTCAAGAAGTTAAAGAAAAGCCGAAGCGGAAGTCCCG
GAAAGGTTCCTTGAAGGCCGCGGCCAGGAATTTAAGTCGAATCAAGTTATTCAGATCAATTTCGCCGGTAAAACTTCTGTGTAAGTGTCGAGATTTATACGTGCAAACTATGCTCAGCTGCAGTTGCACTCACGCCGACACTACTGCCTTCATTTCGCCGGAATCAGGCGGCCGGACTCGCCAGGCTTCACTTCCCGCAG
ATTCATCTAGCACAGGAGGGGGCAGCAGCAGAAGACGCGAAGAGGAGAATCTGCGCCGGCTTATAAAAAATACGGAGAGTAAATCACACTCAGATGATAATCAAGATTTTGTAAATGATCATGACGAGGAGCTCATGGCGATAAGCGCAAAAGCGATCAGTAACAGCATCGGCATGGCCTTCGGTATCCCACGGAGTAGC
AGCGTGAATAATAATAATGGTAATTTTAGTTGGATGAGCATAGCACCAATCGATGAAGAAAGCCCCTGTTACTTCCCTGGCTCCTTCAAGAAGAAATGGGCCACTCCCCTTCCCCGCAGTGCCAGCACTTCTACATTTTCAACCGCAAGTTGATTCCTACATACATATATAGATGTATATCTTCATGAGTATTTTGTATA
TTCTCTGCTGTTTTGTGGCCTCCATGTTTGATCTCTTACGATTTAGAATTGTAATTTGGCAGAGGACTGCTGAATTCCCTAATGCTTAAGGACTTATTGATCATTAATACTGTGTCTTGACAGATTTTGCTGTTAAAGATCGTATTTTTTACTCATTAAATCGATCAATTGGAGCTCTTCGATGAAATCTCTGATTTAAT
AGCTGTAATTACTGAATTATTGTTCTTGTTTTGCCTGACTACAGGGCACTGCTAATTGTTACAGATTAGCTCTGCCCCATCTGATGCACAGGACATAATTGTTTGTTTTTGTCTAGCTTCACTTTTTTTATATCCAAAAACCCTGCTTATATATTAAAAAAAAAAAAATTAAAA
>TRINITY_DN38786_c0_g1_i2 from sample A9 / Example unspliced isoform:TGACAATGGAAGTTACTGCGTTTCCCTTTTCACTCACTGTCGCTCCTTCCTACCTGGTTGTTGGTTGGAATATAAAGCTGCATCCAACCAATTAGGAACAAACAATTCATGCAATTACCATATCACAGCAAGACTTGAAGTCATGGGAAATTTAACCCAATGGCCCCATGATCACGACATTCAAACCTGATTTTTTGGGA
TCAGAACACTCAAGCTTGATTTTTTTAGGTGTGATGGGAACTTCATGCCATATTTTCGGAGCTACCACATCTATACGTCCGTATCAATGAAAACATATCAAGCCGTGTGAGAGCTTTCTGCTCGTCAAAGTATTAGTTGAGGTTTGATTACTGTTTTCAAGAACTTTTAGCTTCAATTTCGGTAAAATTTTTGAAGAAAT
TCATAATTTTTCGGAGTGACTTTCTCTAAATCAACTTGGAACTTTGTTGCTTTTGAAGATTGACCTTAAAGATTTGAAAAATTATTCAAGTCAAGCAAAACTTTGATCATAATGACAAAACCTGgtgagaaatttgaccaaaattcatgagttttacagaatgaagggaaaaattttgcttctgagtcttgactttctct
aaattttccaaaaaaataacttaaagtctttgttcataatcacatcatatcatttagatctaactgtgtcgaagtattttgtaaaaatatttatgattttactgctagGTATTTTCTGAGACATTTGTGACTCTACGACAAGGAAATAATGTCAATTCTTGATATTTGTATCGTATGAAAATTCAATGAATTACATTGCA
ATTATTCTATACGATGCTTGACTCTGATCTTTCGAGGAAGCAGCAGTTGGGTCAAAGGCGTGTAGAAGAGTCATGGCTACGTTTGATTTCTCCAAATCACACCCACACATCACATGAAACAGGCAAAAGTCGATGAAATGTCAATGCCGTGGCGTTCACCCAGCTGACAAACTCAGGAAAATGCAAACAACCCCTGGCGA
ACGGCGAAGACCGCATTGCTCATAGGGCTTCTAAATTGACAATAAGTTCACGCAGCTCACTCATATGATATTCATATACGAATTCAACTTTGGTTCCCCTGTTGGGGGAGGGATTTAAATAGAATCTTGCTGTTAAAATTTAGATTATAATGGATTCTGATCATCATAATCAGGAAGGGCCTGAAAAGCCAATGAACGGC
TGCAATAACAATGTGATCATCAAGTCCAATCAAGAAGGTAAAGATATTCAAGAAGGTAAAGATATTCAAGAAGTTAAAGAAAAGCCGAAGCGGAAGTCCCGGAAAGGTTCCTTGAAGGCCGCGGCCAGGAATTTAAGTCGAATCAAGTTATTCAGATCAATTTCGCCGGTAAAACTTCTGTGTAAGTGTCGAGATTTATA
CGTGCAAACTATGCTCAGCTGCAGTTGCACTCACGCCGACACTACTGCCTTCATTTCGCCGGAATCAGGCGGCCGGACTCGCCAGGCTTCACTTCCCGCAGATTCATCTAGCACAGGAGGGGGCAGCAGCAGAAGACGCGAAGAGGAGAATCTGCGCCGGCTTATAAAAAATACGGAGAGTAAATCACACTCAGATGATA
ATCAAGATTTTGTAAATGATCATGACGAGGAGCTCATGGCGATAAGCGCAAAAGCGATCAGTAACAGCATCGGCATGGCCTTCGGTATCCCACGGAGTAGCAGCGTGAATAATAATAATGGTAATTTTAGTTGGATGAGCATAGCACCAATCGATGAAGAAAGCCCCTGTTACTTCCCTGGCTCCTTCAAGAAGAAATGG
GCCACTCCCCTTCCCCGCAGTGCCAGCACTTCTACATTTTCAACCGCAAGTTGATTCCTACATACATATATAGATGTATATCTTCATGAGTATTTTGTATATTCTCTGCTGTTTTGTGGCCTCCATGTTTGATCTCTTACGATTTAGAATTGTAATTTGGCAGAGGACTGCTGAATTCCCTAATGCTTAAGGACTTATTG
ATCATTAATACTGTGTCTTGACAGATTTTGCTGTTAAAGATCGTATTTTTTACTCATTAAATCGATCAATTGGAGCTCTTCGATGAAATCTCTGATTTAATAGCTGTAATTACTGAATTATTGTTCTTGTTTTGCCTGACTACAGGGCACTGCTAATTGTTACAGATTAGCTCTGCCCCATCTGATGCACAGGACATAAT
TGTTTGTTTTTGTCTAGCTTCACTTTTTTTATATCCAAAAACCCTGCTTATATATTAAAAAAAAAAAAATTAAAA
Intron 2 GTTTGATTAC ... GCTTTTGAAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 3 | 0 | 0 |
| A2 | 100 | 0 | 2 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 15.02 | 6 | 0 | 2.4 |
| A5 | 100 | 0 | 0 | 1 |
| A6 | 9.09 | 5 | 0 | 1 |
| A7 | 4.08 | 3 | 0 | 0.3 |
| A8 | 27.38 | 3 | 1 | 1.3 |
| A9 | 42.86 | 4 | 4 | 2 |
| A10 | 36.36 | 7 | 6 | 2 |
>TRINITY_DN40630_c0_g1_i3 from sample A7 / Example spliced isoformCTGGAGACGGTGTGACAATGGAAGTTACTGCGTTTCCCTTTTCACTCACTGTCGCTCCTTCCTACCTGGTTGTTGGTTGGAATATAAAGCTGCATCCAACCAATTAGGAACAAACAATTCATGCAATTACCATATCACAGCAAGACTTGAAGTCATGGGAAATTTAACCCAATGGCCCCATGATCACGACATTCAAACCT
GATTTTTTGGGATCAGAACACTCAAGCTTGATTTTTTTAGGTGTGATGGGAACTTCATGCCATATTTTCGGAGCTACCACATCTATACGTCCGTATCAATGAAAACATATCAAGCCGTGTGAGAGCTTTCTGCTCGTCAAAGTATTAGTTGAGATTGACCTTAAAGATTTGAAAAATTATTCAAGTCAAGCAAAACTTTG
ATCATAATGACAAAACCTGGTATTTTCTGAGACATTTGTGACTCTACGACAAGGAAATAATGTCAATTCTTGATATTTGTATCGTATGAAAATTCAATGAATTACATTGCAATTATTCTATACGATGCTTGACTCTGATCTTTCGAGGAAGCAGCAGTTGGGTCAAAGGCGTGTAGAAGAGTCATGGCTACGTTTGATTT
CTCCAAATCACACCCACACATCACATGAAACAGGCAAAAGTCGATGAAATGTCAATGCCGTGGCGTTCACCCAGCTGACAAACTCAGGAAAATGCAAACAACCCCTGGCGAACGGCGAAGACCGCATTGCTCATAGGGCTTCTAAATTGACAATAAGTTCACGCAGCTCACTCATATGATATTCATATACGAATTCAACT
TTGGTTCCCCTGTTGGGGGAGGGATTTAAATAGAATCTTGCTGTTAAAATTTAGATTATAATGGATTCTGATCATCATAATCAGGAAGGGCCTGAAAAGCCAATGAACGGCTGCAATAACAATGTGATCATCAAGTCCAATCAAGAAGGTAAAGATATTCAAGAAGGTAAAGATATTCAAGAAGTTAAAGAAAAGCCGAA
GCGGAAGTCCCGGAAAGGTTCCTTGAAGGCCGCGGCCAGGAATTTAAGTCGAATCAAGTTATTCAGATCAATTTCGCCGGTAAAACTTCTGTGTAAGTGTCGAGATTTATACGTGCAAACTATGCTCAGCTGCAGTTGCACTCACGCCGACACTACTGCCTTCATTTCGCCGGAATCAGGCGGCCGGACTCGCCAGGCTT
CACTTCCCGCAGATTCATCTAGCACAGGAGGGGGCAGCAGCAGAAGACGCGAAGAGGAGAATCTGCGCCGGCTTATAAAAAATACGGAGAGTAAATCACACTCAGATGATAATCAAGATTTTGTAAATGATCATGACGAGGAGCTCATGGCGATAAGCGCAAAAGCGATCAGTAACAGCATCGGCATGGCCTTCGGTATC
CCACGGAGTAGCAGCGTGAATAATAATAATGGTAATTTTAGTTGGATGAGCATAGCACCAATCGATGAAGAAAGCCCCTGTTACTTCCCTGGCTCCTTCAAGAAGAAATGGGCCACTCCCCTTCCCCGCAGTGCCAGCACTTCTACATTTTCAACCGCAAGTTGATTCCTACATACATATATAGATGTATATCTTCATGA
GTATTTTGTATATTCTCTGCTGTTTTGTGGCCTCCATGTTTGATCTCTTACGATTTAGAATTGTAATTTGGCAGAGGACTGCTGAATTCCCTAATGCTTAAGGACTTATTGATCATTAATACTGTGTCTTGACAGATTTTGCTGTTAAAGATCGTATTTTTTACTCATTAAATCGATCAATTGGAGCTCTTCGATGAAAT
CTCTGATTTAATAGCTGTAATTACTGAATTATTGTTCTTGTTTTGCCTGACTACAGGGCACTGCTAATTGTTACAGATTAGCTCTGCCCCATCTGATGCACAGGACATAATTGTTTGTTTTTGTCTAGCTTCACTTTTTTTATATCCAAAAACCCTG
>TRINITY_DN40630_c0_g1_i6 from sample A7 / Example unspliced isoform:CTGGAGACGGTGTGACAATGGAAGTTACTGCGTTTCCCTTTTCACTCACTGTCGCTCCTTCCTACCTGGTTGTTGGTTGGAATATAAAGCTGCATCCAACCAATTAGGAACAAACAATTCATGCAATTACCATATCACAGCAAGACTTGAAGTCATGGGAAATTTAACCCAATGGCCCCATGATCACGACATTCAAACCT
GATTTTTTGGGATCAGAACACTCAAGCTTGATTTTTTTAGGTGTGATGGGAACTTCATGCCATATTTTCGGAGCTACCACATCTATACGTCCGTATCAATGAAAACATATCAAGCCGTGTGAGAGCTTTCTGCTCGTCAAAGTATTAGTTGAGgtttgattactgttttcaagaacttttagcttcaatttcggtaaaat
ttttgaagaaattcataatttttcggagtgactttctctaaatcaacttggaactttgttgcttttgaagATTGACCTTAAAGATTTGAAAAATTATTCAAGTCAAGCAAAACTTTGATCATAATGACAAAACCTGGTATTTTCTGAGACATTTGTGACTCTACGACAAGGAAATAATGTCAATTCTTGATATTTGTATC
GTATGAAAATTCAATGAATTACATTGCAATTATTCTATACGATGCTTGACTCTGATCTTTCGAGGAAGCAGCAGTTGGGTCAAAGGCGTGTAGAAGAGTCATGGCTACGTTTGATTTCTCCAAATCACACCCACACATCACATGAAACAGGCAAAAGTCGATGAAATGTCAATGCCGTGGCGTTCACCCAGCTGACAAAC
TCAGGAAAATGCAAACAACCCCTGGCGAACGGCGAAGACCGCATTGCTCATAGGGCTTCTAAATTGACAATAAGTTCACGCAGCTCACTCATATGATATTCATATACGAATTCAACTTTGGTTCCCCTGTTGGGGGAGGGATTTAAATAGAATCTTGCTGTTAAAATTTAGATTATAATGGATTCTGATCATCATAATCA
GGAAGGGCCTGAAAAGCCAATGAACGGCTGCAATAACAATGTGATCATCAAGTCCAATCAAGAAGGTAAAGATATTCAAGAAGGTAAAGATATTCAAGAAGTTAAAGAAAAGCCGAAGCGGAAGTCCCGGAAAGGTTCCTTGAAGGCCGCGGCCAGGAATTTAAGTCGAATCAAGTTATTCAGATCAATTTCGCCGGTAA
AACTTCTGTGTAAGTGTCGAGATTTATACGTGCAAACTATGCTCAGCTGCAGTTGCACTCACGCCGACACTACTGCCTTCATTTCGCCGGAATCAGGCGGCCGGACTCGCCAGGCTTCACTTCCCGCAGATTCATCTAGCACAGGAGGGGGCAGCAGCAGAAGACGCGAAGAGGAGAATCTGCGCCGGCTTATAAAAAAT
ACGGAGAGTAAATCACACTCAGATGATAATCAAGATTTTGTAAATGATCATGACGAGGAGCTCATGGCGATAAGCGCAAAAGCGATCAGTAACAGCATCGGCATGGCCTTCGGTATCCCACGGAGTAGCAGCGTGAATAATAATAATGGTAATTTTAGTTGGATGAGCATAGCACCAATCGATGAAGAAAGCCCCTGTTA
CTTCCCTGGCTCCTTCAAGAAGAAATGGGCCACTCCCCTTCCCCGCAGTGCCAGCACTTCTACATTTTCAACCGCAAGTTGATTCCTACATACATATATAGATGTATATCTTCATGAGTATTTTGTATATTCTCTGCTGTTTTGTGGCCTCCATGTTTGATCTCTTACGATTTAGAATTGTAATTTGGCAGAGGACTGCT
GAATTCCCTAATGCTTAAGGACTTATTGATCATTAATACTGTGTCTTGACAGATTTTGCTGTTAAAGATCGTATTTTTTACTCATTAAATCGATCAATTGGAGCTCTTCGATGAAATCTCTGATTTAATAGCTGTAATTACTGAATTATTGTTCTTGTTTTGCCTGACTACAGGGCACTGCTAATTGTTACAGATTAGCT
CTGCCCCATCTGATGCACAGGACATAATTGTTTGTTTTTGTCTAGCTTCACTTTTTTTATATCCAAAAACCCTG