sp|Q9C5J6|IPT9_ARATH ----> tRNA dimethylallyltransferase 9
Intron 1 GTCTGACAAT ... GGCAACATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.59 | 13 | 8 | 7 |
| A2 | 45.95 | 10 | 7 | 10 |
| A3 | 33.33 | 6 | 5 | 1 |
| A4 | 37.14 | 11 | 6 | 7 |
| A5 | 60 | 3 | 4 | 5 |
| A6 | 36.34 | 37.7 | 22 | 21 |
| A7 | 43.05 | 43 | 28 | 37 |
| A8 | 36.73 | 62 | 32 | 40 |
| A9 | 36.96 | 58 | 29 | 39 |
| A10 | 42.31 | 45 | 33 | 33 |
>TRINITY_DN40775_c9_g1_i5 from sample A8 / Example spliced isoformCATGATTTTTCCATCTTCATACAAAACGCTTCTCCATTTAAGGTATTTCCATCAATCCATCCATATCTGAGAATATATATGGTGTATGGTATGGAGGCTGTTTCGTTCTGGGCAAGCTTTCTATTAGTATCCAGGAAAAAACCTTTTCCGATGACGAATACAAACACCATGAGAATCGAAACCGTGTCCTGCACTAGCCA
AGCGAACCGCAATAAGCCCAAGGTGATTGTAATCTCAGGTCCTACAGGAATCGGCAAGAGCAGACTCGCATTGGAATTAGCCAAGAGAATAGGTGGTGAAATCATCAGTGCCGACTCCGTGCAGGTTTATAGGGGTTTAGATGTTGGATCAGCAAAGACTCTTATTGGAGATCGTCAGGATATACCGCACCACTTACTTG
ACATTTTACATCCTACTGAAGAATATTCCGTGGGAAAATACTTTGATGCTGCTAGAGAAGCCACGAGAGATATTTTTCATAGAGGAAATATACCAATAGTTGTTGGTGGCAGTGGGCTATACCTACGATGGTATGTGGCTGAATTCAGGGTATTTTGGCTTTTATATCACCCTTTGTTTCTGAAAAGGAGCAATGGAATT
TTGGCCGAAGCCTCTTGGCTGTTGGATATGGGAATTCTTCCTAATACAACTTGCACATCTCGTGCAATTGGCTATCGACAAGCTATGGAATACTTATTTAGGTGCAGACAAGAAAGGGGTGTCAGTTCTGAGAAGGAGTTCTATGCATTTCTCTTCGAGTTTCAAACTGCATCTAGGAATTTTGCGAAGCGACAACTGAC
ATGGTTTCGTAATGAACCGTTATATCAATGGCTTAATGCTTCACAATCATTAGAAAAGCTGATAAATTTCATTGTTGATACATATCATGATTCTGTTGATGCATCCCTTCGTCAATCACTTACAGTTAATAAAATAAATAGCAGCAAGGAATCAAAAGACTTGGAGCGCTATCGAACTGAAAACAGGTACCTTGTTAGTT
CAAATGATTGTGCTCCTATTCTGGAGTGGATCCGGTTGACCCAAAGTGGCAAGAAGTAACCTAGCATGCTTTCCTCGATCAACTTCCTGCCATCTGTGAAATACCTCGCATATCTGTAGCTCTCCTGTGGCCATAACAGCCATGCACTTTTCTGAGTGCTAAACACGATGTTCCTCTGGGAGGCCTTAAGAAATTTTATG
GAGAAATGAAAGCTTCTCTATATGTTTCGTTTGTCTCACATTAATGATTATTCTTCACGAGGTGGTGATCCAATTTTATGTAAGACGGCCATTTATCCCTGAGAAACACATTCAGATGAATCCAAACAGATTTGTTCACTTCTTTGCACTCCATTCTTTCGAGGAGTAAGATGAATCCCACTTACAATGTCTTTGCCATT
ATGAAACATGCATCTAATAAGCCCTATTGGATGTGTTACAAAATATTATAATGATTAACATCAGCAATTGCTTCAGGGTTTAACCAAAGCTGCAAACTAAATTCAAAAGAACGAATGACTGCTTCCTATGAATTTCAAGCTCACTGAAAATGAAACACGATAAATTGATTGTCCATATAGATGGGTCAGTTCTATAATAA
TGAAAATAAAAGCTCG
>TRINITY_DN40775_c9_g1_i3 from sample A8 / Example unspliced isoform:CATGATTTTTCCATCTTCATACAAAACGCTTCTCCATTTAAGGTATTTCCATCAATCCATCCATATCTGAGAATATATATGGTGTATGGTATGGAGGCTGTTTCGTTCTGGGCAAGCTTTCTATTAGTATCCAGGAAAAAACCTTTTCCGATGACGAATACAAACACCATGAGAATCGAAACCGTGTCCTGCACTAGCCA
AGCGAACCGCAATAAGCCCAAGGTGATTGTAATCTCAGGTCCTACAGGAATCGGCAAGAGCAGACTCGCATTGGAATTAGCCAAGAGAATAGGTGGTGAAATCATCAGTGCCGACTCCGTGCAGGTTTATAGGGGTTTAGATGTTGGATCAGCAAAGACTCTTATTGGAGATCGTCAGGATATACCGCACCACTTACTTG
ACATTTTACATCCTACTGAAGAATATTCCGTGGGAAAATACTTTGATGCTGCTAGAGAAGCCACGAGAGATATTTTTCATAGAGGAAATATACCAATAGTTGTTGGTGGCAGTGGGCTATACCTACGATGGTATTTGTATGGCAAGCCCGATGTGCCAGAAACATCTTCTGAAATTGTCTCTGATGTCGACTCGGAGCTT
AGAATACTTCAGAGCAATGGAGACTGGGATACAGCTGTGCAGCTTCTTCTGAAAGCAGGTGATACTAGTGCTTGTAATTTGGAGCGCAATGACTGGTACCGCATACGTCGTGGCCTTGAAATTATTAAGGCTGCAGGAGTTCCTCGAACCTCATTTCCTTTACCATATGATTCTCTCAAAGGACGAGTACCCTCAAGATT
AACAGTTTCCTGCAGTGATAGCTCTTATGTGGAAGCTGAAACTGTGCAGAGTTCCTCAACAGAATTGGACTATGACTTTCTCTGCTTTTTTCTTTCAGTTAAAAGGACAGATCTTTATAAGAGAATTGATCAGCGGTGTGAGGAGATGCTTACAGGGAGCAATGGAATTTTGGCCGAAGCCTCTTGGCTGTTGGATATGG
GAATTCTTCCTAATACAACTTGCACATCTCGTGCAATTGGCTATCGACAAGCTATGGAATACTTATTTAGGTGCAGACAAGAAAGGGGTGTCAGTTCTGAGAAGGAGTTCTATGCATTTCTCTTCGAGTTTCAAACTGCATCTAGgtctgacaatggcagagtggcaacatagGAATTTTGCGAAGCGACAACTGACATG
GTTTCGTAATGAACCGTTATATCAATGGCTTAATGCTTCACAATCATTAGAAAAGCTGATAAATTTCATTGTTGATACATATCATGATTCTGTTGATGCATCCCTTCGTCAATCACTTACAGTTAATAAAATAAATAGCAGCAAGGAATCAAAAGACTTGGAGCGCTATCGAACTGAAAACAGGTACCTTGTTAGTTCAA
ATGATTGTGCTCCTATTCTGGAGTGGATCCGGTTGACCCAAAGTGGCAAGAAGTAACCTAGCATGCTTTCCTCGATCAACTTCCTGCCATCTGTGAAATACCTCGCATATCTGTAGCTCTCCTGTGGCCATAACAGCCATGCACTTTTCTGAGTGCTAAACACGATGTTCCTCTGGGAGGCCTTAAGAAATTTTATGGAG
AAATGAAAGCTTCTCTATATGTTTCGTTTGTCTCACATTAATGATTATTCTTCACGAGGTGGTGATCCAATTTTATGTAAGACGGCCATTTATCCCTGAGAAACACATTCAGATGAATCCAAACAGATTTGTTCACTTCTTTGCACTCCATTCTTTCGAGGAGTAAGATGAATCCCACTTACAATGTCTTTGCCATTATG
AAACATGCATCTAATAAGCCCTATTGGATGTGTTACAAAATATTATAATGATTAACATCAGCAATTGCTTCAGGGTTTAACCAAAGCTGCAAACTAAATTCAAAAGAACGAATGACTGCTTCCTATGAATTTCAAGCTCACTGAAAATGAAACACGATAAATTGATTGTCCATATAGATGGGTCAGTTCTATAATAATGA
AAATAAAAGCTCG
Intron 2 GCTGCAGGAG ... TTTCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.67 | 5 | 11 | 9 |
| A2 | 73.91 | 3 | 12 | 5 |
| A3 | 73.33 | 4 | 14 | 8 |
| A4 | 90 | 1 | 14 | 4 |
| A5 | 80.65 | 3 | 14 | 11 |
| A6 | 88 | 3 | 22 | 22 |
| A7 | 82.28 | 7 | 39 | 26 |
| A8 | 62.86 | 13 | 28 | 16 |
| A9 | 80.65 | 6 | 35 | 15 |
| A10 | 91.49 | 2 | 23 | 20 |
>TRINITY_DN122000_c7_g2_i4 from sample A3 / Example spliced isoformATGCTGCTAGAGAAGCCACGAGAAATATTCTTCATAGAGGAAATGTACCAATAGTTGTTGGTGGCAGTGGGCTATACCTACGATGGTATTTGTATGGCAAGCCCGATGTGCCAGAAACATCTTCTGAAATTGTCTCTGATGTCGACTCGGAGCTTAGAATACTTCAGAGCAATGGAGACTGGGATACAGCTGTGCAGCTT
CTTCTGAAAGCAGGTGATACTAGTGCTTGTAATTTGGAGCGCAATGACTGGTACCGCATACGTCGTGGCCTTGAAATTATTAAGGCTGCAGGAGTTCCTCGAACCTCATTTCCTTTACCATATGATTCTCTCAAAGGACGAGTACCCTTAAGATTAACAGTTTCCTGCAGTGATAGCTCTTATGTGGAAGCTGAAACTGT
GCAGAGTTCCTCAACAGAATTGGACTATGACTTTCTCTGCTTTTTTCTTTCAGTTAAAAGGACAGATCTTTATAAGAGAATTGATCAGCGGTGTGAGGAGATGCTTAATACAAACACCATGAGAATCGAAACCGTGTCCTGCACTAGCCAAGCGAACCGCAATAAGCCCAAGGTGATTGTAATCTCAGGTCCTACAGGAA
TCGGCAAGAGCAGACTCGCATTGGAATTAGCCAAGAGAATAGGTGGTGAAATCATCAGTGCCGACTCCGTGCAGGTTTATAGGGGTTTAGATGTTGGATCAGCAAAGACTCTTATTGGAGATCGTCAGGATATACCGCACCACTTACTTGACATTTTACATCCTACTGAAGAATATTCCGTGGGAAAATACTTTGATGCT
GCTAGAGAAGCCACGAGAAATATTCTTCATAGAGGAAATGTACCAATAGTTGTTGGTGGCAGTGGGCTATACCTACGATGGTATGTGGCTGAATTCAGGGTATTTTGGCTTTTATATCACCCTTTGTTTCTGAAAATTGTATGGCAAGCCCGATGTGCCAGAAACATCTTCTGAAATTGTCTCTGATGTCGACTCGGAGC
TTAGAATACTTCAGAGCAATGGAGACTGGGATACAGCTGTGCAGCTTCTTCTGAAAGCAGGTGATACTAGTGCTTGTAATTTGGAGCGCAATGACTGGTACCGCATACGTCGTGGCCTTGAAATTATTAAGTTAAAAGGACAGATCTTTATAAGAGAATTGATCAGCGGTGTGAGGAGATGCTTACAGGGAGCAATGGAA
TTTTGGCCGAAGCCTCTTGGCTCTTGGATATGGGAATTCTTCCTAATACAACTTGCACATCTCGTGCAATTGGCTATCGACAAGCTATGGAATACTTATTTAGGTGCAGACAAGAAAGGGGTGTCAGTTCTGAGAAGGAGTTCTATGCATTTCTCTTCGAGTTTCAAACTGCATCTAGGAATTTTGCGAAGCGACAACTG
ACATGGTTTCGTAATGAACCGTTATATCAATGGCTTAATGCTTCACAATCATTAGAAAAGCTGATAAATTTCATTGTTGATACATATCATGATTCTGTTGATGCATCCCTTCGTCAATCACTTACGGTTAATAAAATAAATAGCAGCAAGGAATCAAAAGACTTGGAGCGCTATCGAACTGAAAACAGGTACCTTGTTAG
TTCAAATGATTGTGCTCCTATTCTGGAGTGGATCCGGTTGACCCAAAGTGGCAAGAAGTAACCTAGCATGCTTTCCTCGATCAACTTTTGCCATCTGTGAAATACCTCGCATATCTGTAGCTCTCCTGTGGCCATAACAGCCATGCACTTTTCTGAGTGCTAAACACGATGTTCCTCTGGGAGGCCTTAAGAAATTTTAT
GGAGAAATGAAAGCTTCTCTATATGTTTCGTTTGTCTCACATTAATGATTATTCTTCACGAGGTGGTGATCCAATTTTATGTAAGACGGCCATTTATCCCTGAGAAACACATTCAGATGAATCCAAACAGATTTGTTCACTTCTTTGTACTCCGTTCTTTCGAGGAGTAAGATGAATCCCACTTACAATGTCTTTGCCAT
TATGAAACATGCATCTAATAAGCCCTATTGGATGTGTTACAAAATATTATAATGATTAACATCAGCAATTGCTTCAGGGTTTAACCAAAGCTGCAAACTAAATTCAAAAGAACGAATGACTGCTTCCTATGAATTTCAAGCTCACTGAAAATGGAACACGATAAATTGATTGTCCATATAGATGGGTCAGTTCTATAATA
ATGAAAATAAAAGATCTTCGTTT
>TRINITY_DN122000_c7_g2_i4 from sample A3 / Example unspliced isoform:ATGCTGCTAGAGAAGCCACGAGAAATATTCTTCATAGAGGAAATGTACCAATAGTTGTTGGTGGCAGTGGGCTATACCTACGATGGTATTTGTATGGCAAGCCCGATGTGCCAGAAACATCTTCTGAAATTGTCTCTGATGTCGACTCGGAGCTTAGAATACTTCAGAGCAATGGAGACTGGGATACAGCTGTGCAGCTT
CTTCTGAAAGCAGGTGATACTAGTGCTTGTAATTTGGAGCGCAATGACTGGTACCGCATACGTCGTGGCCTTGAAATTATTAAGgctgcaggagttcctcgaacctcatttcctttaccatatgattctctcaaaggacgagtacccttaagattaacagtttcctgcagtgatagctcttatgtggaagctgaaactgt
gcagagttcctcaacagaattggactatgactttctctgcttttttctttcagTTAAAAGGACAGATCTTTATAAGAGAATTGATCAGCGGTGTGAGGAGATGCTTAATACAAACACCATGAGAATCGAAACCGTGTCCTGCACTAGCCAAGCGAACCGCAATAAGCCCAAGGTGATTGTAATCTCAGGTCCTACAGGAA
TCGGCAAGAGCAGACTCGCATTGGAATTAGCCAAGAGAATAGGTGGTGAAATCATCAGTGCCGACTCCGTGCAGGTTTATAGGGGTTTAGATGTTGGATCAGCAAAGACTCTTATTGGAGATCGTCAGGATATACCGCACCACTTACTTGACATTTTACATCCTACTGAAGAATATTCCGTGGGAAAATACTTTGATGCT
GCTAGAGAAGCCACGAGAAATATTCTTCATAGAGGAAATGTACCAATAGTTGTTGGTGGCAGTGGGCTATACCTACGATGGTATGTGGCTGAATTCAGGGTATTTTGGCTTTTATATCACCCTTTGTTTCTGAAAATTGTATGGCAAGCCCGATGTGCCAGAAACATCTTCTGAAATTGTCTCTGATGTCGACTCGGAGC
TTAGAATACTTCAGAGCAATGGAGACTGGGATACAGCTGTGCAGCTTCTTCTGAAAGCAGGTGATACTAGTGCTTGTAATTTGGAGCGCAATGACTGGTACCGCATACGTCGTGGCCTTGAAATTATTAAGTTAAAAGGACAGATCTTTATAAGAGAATTGATCAGCGGTGTGAGGAGATGCTTACAGGGAGCAATGGAA
TTTTGGCCGAAGCCTCTTGGCTCTTGGATATGGGAATTCTTCCTAATACAACTTGCACATCTCGTGCAATTGGCTATCGACAAGCTATGGAATACTTATTTAGGTGCAGACAAGAAAGGGGTGTCAGTTCTGAGAAGGAGTTCTATGCATTTCTCTTCGAGTTTCAAACTGCATCTAGGAATTTTGCGAAGCGACAACTG
ACATGGTTTCGTAATGAACCGTTATATCAATGGCTTAATGCTTCACAATCATTAGAAAAGCTGATAAATTTCATTGTTGATACATATCATGATTCTGTTGATGCATCCCTTCGTCAATCACTTACGGTTAATAAAATAAATAGCAGCAAGGAATCAAAAGACTTGGAGCGCTATCGAACTGAAAACAGGTACCTTGTTAG
TTCAAATGATTGTGCTCCTATTCTGGAGTGGATCCGGTTGACCCAAAGTGGCAAGAAGTAACCTAGCATGCTTTCCTCGATCAACTTTTGCCATCTGTGAAATACCTCGCATATCTGTAGCTCTCCTGTGGCCATAACAGCCATGCACTTTTCTGAGTGCTAAACACGATGTTCCTCTGGGAGGCCTTAAGAAATTTTAT
GGAGAAATGAAAGCTTCTCTATATGTTTCGTTTGTCTCACATTAATGATTATTCTTCACGAGGTGGTGATCCAATTTTATGTAAGACGGCCATTTATCCCTGAGAAACACATTCAGATGAATCCAAACAGATTTGTTCACTTCTTTGTACTCCGTTCTTTCGAGGAGTAAGATGAATCCCACTTACAATGTCTTTGCCAT
TATGAAACATGCATCTAATAAGCCCTATTGGATGTGTTACAAAATATTATAATGATTAACATCAGCAATTGCTTCAGGGTTTAACCAAAGCTGCAAACTAAATTCAAAAGAACGAATGACTGCTTCCTATGAATTTCAAGCTCACTGAAAATGGAACACGATAAATTGATTGTCCATATAGATGGGTCAGTTCTATAATA
ATGAAAATAAAAGATCTTCGTTT