sp|Q1G3M2|LYRM9_ARATH ----> LYR motif-containing protein At3g19508

Intron 1 GTATGAATTT ... TAAAACTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.99	37	11.3	8.7
A2	18.57	33	8	9
A3	23.05	57	19.7	8.3
A4	14.41	29	5.3	2.7
A5	14.87	20	3.8	1.3
A6	13.65	286.7	49	46
A7	14.81	435	82	70
A8	13.08	500.7	81.3	98
A9	13.26	400.7	66.3	68.3
A10	13.47	350.5	59	40.7

>TRINITY_DN133249_c7_g1_i7 from sample A1 / Example spliced isoform

CGAAAAGATTCTGAAGGAGGAGAAAGAGCTCAAATTCTTCGAAAGCAAGGGTGAAGGAAGGGAAGCTCATGTCAATGTAGGAAGGATAAATATCTAATGCCATGGTAAGGATGTATTTAATGGAGGAAGGATGCATGTCTAATGTCACGATATCGAAAGTATGCTGCAAGGATGGTTAATATGCACATGTGAACTTTGTT
ACTCCAACAAAGACAACTGAGATAGGTCGATCAGCTGGTCTGTCTTGAAATGGAGAGGGCTTTAAGAGCATACGGCGAAGTTTTGAGGTTGATCAGGCTGCTCCCCAAACAAACGAGATCATATTATCAACAGTATGCAAGAGAAAATTTTGTTAACTACAGAGAAGTCTCAGGCTCTGACTCCATGGAGGAACTGCTCC
AAAGGACCTACAATCATTCCTGTTGGGTTCTTAAAAAGTACCAAGTGGATGAGGCGGCGGCCAAGAATCTCAAGGAGATTTGTTTGAATACATAGTGTTGTCGGGTATTTAAATTCAAAGTTGTTTCAGGAAATTGATGTCCACACGGTGTAGTTTATGTAAAATTGCTGTTGGGTCAGTGGAACACCAGCATCCTGGTG
GGCTTTTCATTTCAATAAAGAACATTGCATTCTTTCATTGGGCAGTTGTAGGTTAGTTTTTTGAGCTTCTGATGTATACAGTTGAGGAGCATTTATTGTATCAGAGGTTGGCTGCAACTGTCTGTGATCATATTTAAGTCTCACCTTTTGATTTGTATTATTTAGTAATCTTCAATCCACCTTATGAATGGATGCAGTTG
AAGGGTTGACTAGGTTAATATTGTTGTCTGCTTGCCCCCACCCCAATTATAAAGAATTAGTTGGAGACTTCGGATCAAGA

>TRINITY_DN133249_c7_g1_i1 from sample A1 / Example unspliced isoform:

CGAAAAGATTCTGAAGGAGGAGAAAGAGCTCAAATTCTTCGAAAGCAAGGGTGAAGGAAGGGAAGCTCATGTCAATGTAGGAAGGATAAATATCTAATGCCATGGTAAGGATGTATTTAATGGAGGAAGGATGCATGTCTAATGTCACGATATCGAAAGTATGCTGCAAGGATGGTTAATATGCACATGTGAACTTTGTT
ACTCCAACAAAGACAACTGAGATAGGTCGATCAGCTGGTCTGTCTTGAAATGGAGAGGGCTTTAAGAGCATACGGCGAAGTTTTGAGGTTGATCAGGCTGCTCCCCAAACAAACGAGATCATATTATCAACAGTATGCAAGAGAAAATTTTGTTAACTACAGAGAAGTCTCAGGCTCTGACTCCATGGAGGAACTGCTCC
AAAGGACCTACAATCATTCCTGTTGGGTTCTTAAAAAGgtatgaatttttatatgattgggcaaacgcatttacctcttcgtttgcagtaggatatatagttctgtatttgaagactggaatttatatgtggatagaaacctttgtaggttttgaggacactcagcgcttattgtttttatttttcttgtgataaaactc
agTACCAAGTGGATGAGGCGGCGGCCAAGAATCTCAAGGAGATTTGTTTGAATACATAGTGTTGTCGGGTATTTAAATTCAAAGTTGTTTCAGGAAATTGATGTCCACACGGTGTAGTTTATGTAAAATTGCTGTTGGGTCAGTGGAACACCAGCATCCTGGTGGGCTTTTCATTTCAATAAAGAACATTGCATTCTTTC
ATTGGGCAGTTGTAGGTTAGTTTTTTGAGCTTCTGATGTATACAGTTGAGGAGCATTTATTGTATCAGAGGTTGGCTGCAACTGTCTGTGATCATATTTAAGTCTCACCTTTTGATTTGTATTATTTAGTAATCTTCAATCCACCTTATGAATGGATGCAGTTGAAGGGTTGACTAGGTTAATATTGTTGTCTGCTTGCC
CCCACCCCAATTATAAAGAATTAGTTGGAGACTTCGGATCAAGA

Intron 2 GTAATTAGCA ... GTTCTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	66.67	2	3	4
A2	40	6	4	4
A3	66.67	1	2	2
A4	60	4	2	6
A5	100	0	6	3
A6	45.61	31	6	26
A7	46.94	52	6	46
A8	50.68	73	19	75
A9	44.55	56	4	45
A10	42.61	66	10	49

>TRINITY_DN48554_c2_g1_i10 from sample A10 / Example spliced isoform

CTTTGGGGCATGGTAAAGAGAGACAAAAGAAGAGCAAAGGAATGCTGGAAAGATTCCGAAGGAGGAGAAAGAGTTCAAATTCTTCAAAAGCAAGGGTGAAGGAAGGGAAGCTCATGTCAATGTAGGAAGGATAAATATCTAATGCCATGGGCCACCAAACTGCAAATTTCAAGTTGAGAAATATTGGTTGTCATTGCTTC
ATAATGATTGGATATTTAACAGGTGTCATAGTTGGATGGGCTTTCAATTTTGGTGTTGTTCTCCTCATTAAAAATTTTACAGCAGATGATGAAGTTGTTTCAAGTTCAAATGATCTGGATGTTAAGTGTCAAATGTCGTTTGCTTCTTATCTTCCACATGGATGAATAGTTATTTAAGTATAGGATTGCATTTATAAAAG
TGATGATCCAAATGCCAGGTGCACTATTGTAAAGGGTTTTCCGATTAGCTAAAGCTGTTATCATACTTGACAACTGTCAAATGGAAACTCTATTTTTAGGTAGTTGTTGCATAAAAGACTCAAGGAGTTTATGATTTTTCTGCTATATAAACTATGAACATCATTGTAGATGGGGATGGAGTTTGGACGAGAAAACTTAT
ACTGAAATTTTGATGTTACACTTGTGGATATTCTGAAGAATTTGTCTCTTTTCTGAATGTCTCGAAAGTATAGTTTCCTGAACTGGTATCATTTGTG

>TRINITY_DN48554_c2_g1_i13 from sample A10 / Example unspliced isoform:

GGAAGCAATTTCTGTTACCTCTACCTAAAGATTTTGATGACAATTTTGGCTTCTCGGTAAGATTTTTGAAACCCCAATGGCTACCCTTGTTTCGATTAATAGTCTGGTACATAAGTTGTGATGACCGTTTTTCTTCTGTTCATCTGTATCACCTCAAATTGTTGATGGAGTTGAGGGGATCTAAATTGAATTTTCCCTAT
TTCTTACTCAATAGTCTAGGGAAAATGGCTTCTGCAAATAAAAATGCAATTGGGGTTCAAGTTCATAGTCTTTTCCATCATGGGTTAATCAAAATATTAGTTCAACACCAATTGTCACTTAATGGCAAGACCTGGGATCACTTTTTAACCAAGAATGATTTAGGTAAAAATGAGATTTGGCCTCCTGTTAGGCCTAAGAC
TCGGCATAAAAGAGAGAAGCCCTCAGTTCCTGAAAACTTGGCATTTAAATCAAATATCACACCAGGAGAAATAGGTGTTAACAATCTAGTTTTAGTACAGAATTCAGGTGGGGAGTTGGTGAAGGATGAATGTGTTTTCGAAACCCTTGTCTCTCAACCTAAGAATATTTAGGATCTTCCTACGCAAAAGCTTGAAGAAT
TAGCAAATGTTTGTTATGCTGAAACTAAGGTAGAACAAAGGAAGTTAGCTTCAGAAGTTCCACAACGATTTACCTGCAGTATGGTTTCTATGTCAATACCTGTGACCTTGCCACAACAGGAGGAATCCTCGTTAATTGAAATCATTAGTGAAGAGGAAGATCGGGTTCCCATAGAAATTCCTCCACAGGAATAGAGGATT
GAAATAAATGATCTAGTGATGCATTCTGGAGATGGAGATGGGGATGAAAATCATTCATCCTATCAACATAATGATGTAGATAGTAAAAGAGAGTCTTCATTCATAGACGGTTCTTCCTCTAGCCGAACTCTCAGAAGTATCACAAAGACTATGAAATTGAAGCAACGAAATTCTCAGTTAAAAGAAAAGCTTTCCAAATC
TGAATCAAATTCATTAGTGTTGAATGATGAGATTCAAAATTTAAGATAGGAATTACTGACTTGGGATGGCCGATGGCAACATGTGAAAACTAAGAAGACCAATTTTAAAGCTGAGAATAGATCTTTAGCTGCTGCTAATCAGAAAATGTTTAAGTAAGAGGAGAATTACAAAATTGAATTTGTAAAATTGAAAGCTAAGT
TGTCTGAAGCTTGCAGGGCCACCAAACTGCAAATTTCAAGTTGAGAAATATTGGTTGTCATTGCTTCATAATGATTGGATATTTAACAGgtaattagcatgcccatagaatcatagattctgcgggaattgcttatcatttattgaatttattatctctgttttattattaatgcattattcatgagtctttatatttag
ttgattggttcttgcagGTGTCATAGTTGGATGGGCTTTCAATTTTGGTGTTGTTCTCCTCATTAAAAATTTTACAGCAGATGATGAAGTTGTTTCAAGTTCAAATGATCTGGATGTTAAGTGTCAAATGTCGTTTGCTTCTTATCTTCCACATGGATGAATAGTTATTTAAGTATAGGATTGCATTTATAAAAGTGATG
ATCCAAATGCCAGGTGCACTATTGTAAAGGGTTTTCCGATTAGCTAAAGCTGTTATCATACTTGACAACTGTCAAATGGAAACTCTATTTTTAGGTAGTTGTTGCATAAAAGACTCAAGGAGTTTATGATTTTTCTGCTATATAAACTATGAACATCATTGTAGATGGGGATGGAGTTTGGACGAGAAAACTTATACTGA
AATTTTGATGTTACACTTGTGGATATTCTGAAGAATTTGTCTCTTTTCTGAATGTCTCGAAAGTATAGTTTCCTGAACTGGTATCATTTGTG