NA ----> NA

Intron 1 GTATCGTGGA ... TTTTCTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	7	7	7
A2	57.14	6	3	13
A3	52.17	11	9	15
A4	64.1	7	12	13
A5	57.11	2.7	3	4
A6	41.64	92.5	63.5	68.5
A7	51.79	62.8	43.5	91.5
A8	54.62	45.5	36	73.5
A9	41.87	109.7	70.5	87.5
A10	50	55.2	42.3	68

>TRINITY_DN106956_c1_g3_i2 from sample A3 / Example spliced isoform

CGCTAGAAGGTTCGGCCAACGAACACGCAAGAAAACGTTTCCTTTTGCTTTCTGCTCTGTTCACGCGTTCATTGGAAGCCACTGGCCAGCTCTTTAAATTCATATCACAGCACACACAAGAGAAACTTTGGTGATGGCGATTCCGAAAATGGTAGCAGCGGGCAAAGGGCAGTGGATGGAAATTGCTCCTTCCCGGAAGG
AATGCGTGTTGAAACGGTGGCCTTCTGGAAAAAAGCTGCTAACGATCACAGAGGGGCGGAGTCTGAGCAATGGCGAGCTCATGGATGGCCTACAACCTGCCTTTCCTGCGGTCTCTGACTTCCAAGCGAAGGGCGAAGGGCGGTAATGGAAGATCTGGGTCGGCAGAATGTTGAAATGTTTCTGTACATCTGAGAAAATC
TTCTTTGGGGTTTTGCAAATGAGAGAATTGTGTATGGGAATCGATACCTGATTTGGACGATCCATCTGTAACGATCATATGCTGCTGCAATTGCCCAAATTTGTATTATATTTACTATTCCTAAAATTCATAAATTTAC

>TRINITY_DN106956_c1_g3_i1 from sample A3 / Example unspliced isoform:

CGCTAGAAGGTTCGGCCAACGAACACGCAAGAAAACGTTTCCTTTTGCTTTCTGCTCTGTTCACGCGTTCATTGGAAGCCACTGGCCAGCTCTTTAAATTCATATCACAGCACACACAAGgtatcgtggaaatcacaactcaaaaaatcccagtaatttctgatttgcgtgatcttcaagcagttttctgctattcaact
tgctttaaatcgcaccgtattgcagtttgcaaagaagctgttttagggtttggtgaaggttggggtttttttattcaagattgttttctccagAGAAACTTTGGTGATGGCGATTCCGAAAATGGTAGCAGCGGGCAAAGGGCAGTGGATGGAAATTGCTCCTTCCCGGAAGGAATGCGTGTTGAAACGGTGGCCTTCTG
GAAAAAAGCTGCTAACGATCACAGAGGGGCGGAGTCTGAGCAATGGCGAGCTCATGGATGGCCTACAACCTGCCTTTCCTGCGGTCTCTGACTTCCAAGCGAAGGGCGAAGGGCGGTAATGGAAGATCTGGGTCGGCAGAATGTTGAAATGTTTCTGTACATCTGAGAAAATCTTCTTTGGGGTTTTGCAAATGAGAGAA
TTGTGTATGGGAATCGATACCTGATTTGGACGATCCATCTGTAACGATCATATGCTGCTGCAATTGCCCAAATTTGTATTATATTTACTATTCCTAAAATTCATAAATTTAC

Intron 2 GTATTGTGGA ... CATTTCGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	40.68	35	24	3
A2	36.11	46	26	0
A3	27.78	52	20	2
A4	38.98	36	23	8
A5	22.22	28	8	4
A6	31.21	476	216	3
A7	35.9	341	191	4
A8	29.96	332	142	3
A9	30.2	379	164	2
A10	33.47	318	160	3

>TRINITY_DN98619_c1_g2_i4 from sample A4 / Example spliced isoform

TGCCAATTCTTGAAAAGCTTATTGTTGAAGGTTAGGAGATTCGAAATCGGATCTTTCGTGCGAATATATCGTTGGAAGGTTCGAGAGAAACCCACCGAGTCGCCCGTCCACGCAAGAAAGGTTTGGCGAACGAACACGCAAGAAACGTTTCCTTTTGCGTTCTGCTCGGTTCACGCGCTAAATGAAAGCTACTCGCCAAC
TCTTTAAATCCATTTCGCAGAGCATTACAGCACACAGAAGAGCATTACAGCACACAGAAGAAAGACTTTGGTAATGGCGATTCCGAAAATGGTGGAAGCGGGCAAAGGGCGGTGGATGGAAATCGCTCCTTCCCGGAAGGAATGCGTGGTGAAACGGTGGCATTCCGGGAGAAAGCTGCTCACGATCGCAGAGGGGCGGT
GTCTGAGCAATGGCGAGCTCATGGATGACCTTCACCCTGCCTTTCCTGCGGTCTCTGACTTCCAAGCGAAGGGCGATAATGAAAGATTTGTGTCGGCAGAATGTTGAACTTTTTCTGTACATCTGAGAAAATCTTCTTGGGGTTTTGCTAATGAGAGAGTTGTGTATGGGAATCGATACGTGATTTGGATGATCCATCTG
TTACGATCATATGCTTCTGCAATTACCCGAATTTGTATTATATTTACTATTCCTAAAATTCATAAATTTACAGATTTTTTTTCAGATTTGCCTATGGGTTATTCGATTGCTCAGTGACAATAAGATATTTTTTCAGATTTGCCTCTGGGTCATTCGAGTGCTCAGTGACAATTTTGCATTAGATTTGTTTTGAAATGTAA
CCCTTTTTAGAGATGTATGTAATGGGAGGGGAAATGAGGAAATGCATCTTTGTGTGTATGGACACGAAGCACACGTAGTGTAGCCTGAAAGTAGTGTAGTGTAGTGGACAAGGCTGGTGTTTCAGAGGACACCTTGGACCCTCCAGTTTAT

>TRINITY_DN98619_c1_g2_i5 from sample A4 / Example unspliced isoform:

TGCCAATTCTTGAAAAGCTTATTGTTGAAGGTTAGGAGATTCGAAATCGGATCTTTCGTGCGAATATATCGTTGGAAGGTTCGAGAGAAACCCACCGAGTCGCCCGTCCACGCAAGAAAGGTTTGGCGAACGAACACGCAAGAAACGTTTCCTTTTGCGTTCTGCTCGGTTCACGCGCTAAATGAAAGCTACTCGCCAAC
TCTTTAAATCCATTTCGCAGAGCATTACAGCACACAGAAGgtattgtggaaattacaacccaagaaatctcagaatcttaaatctgatttgagtgctcttcaagcagttttctactattaaaattgctttaagtcgcattgtattgtagtgtgcaaagaagtttgcctttagggtttggttaaggttggggttttttata
tcaagatactcaccaactctttaaattcatttcgcagAGCATTACAGCACACAGAAGGTATTGTGGAAATTACAAC

Intron 3 GTATCGTGGA ... CGTATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.23	2	7	2
A2	71.43	1	3	2
A3	57.58	7	9	10
A4	60	7	12	9
A5	77.14	0.8	3	2
A6	49.76	52.6	64.2	40
A7	63.93	22.8	43.8	37
A8	63.64	22	36	41
A9	58.27	42.6	71.8	47
A10	60.61	26.8	43.2	39

>TRINITY_DN42352_c1_g2_i2 from sample A6 / Example spliced isoform

GAACAATCGATGTTGGTTGGGGATGAACAAAAGTCCGTTGTACCAATTCTCGAAAAAGTCTATTGTTGGAGGTTAGGAGACTTGAAATCGGATCTTTAGTGCTAATATATCGTTGAAAGCTTCGAGATAAAGGCTCAGCCGTCCACGCTAGAAGGTTCGGCCAACGAACACGCAAGAAAACGTTTCCTTTTGCTTTCTGC
TCTGTTCACGCGTTCATTGGAAGCCACTGGCCAGCTCTTTAAATTCATATCACAGCACACACAAGTTTGCAAAGAAGCTGTTTTAGGGTTTGGTGAAGGTTGGGGTTTTTTTATTCAAGATTGTTTTCTCCAGAGAAACTTTGGTGATGGCGATTCCGAAAATGGTAGCAGCGGGCAAAGGGCAGTGGATGGAAATTGCT
CCTTCCCGGAAGGAATGCGTGTTGAAACGGTGGCCTTCTGGAAAAAAGCTGCTAACGATCACAGAGGGGCGGAGTCTGAGCAATGGCGAGCTCATGGATGGCCTACAACCTGCCTTTCCTGCGGTCTCTGACTTCCAAGCGAAGGGCGAAGGGCGGTAATGGAAG

>TRINITY_DN42352_c1_g2_i3 from sample A6 / Example unspliced isoform:

GAACAATCGATGTTGGTTGGGGATGAACAAAAGTCCGTTGTACCAATTCTCGAAAAAGTCTATTGTTGGAGGTTAGGAGACTTGAAATCGGATCTTTAGTGCTAATATATCGTTGAAAGCTTCGAGATAAAGGCTCAGCCGTCCACGCTAGAAGGTTCGGCCAACGAACACGCAAGAAAACGTTTCCTTTTGCTTTCTGC
TCTGTTCACGCGTTCATTGGAAGCCACTGGCCAGCTCTTTAAATTCATATCACAGCACACACAAGgtatcgtggaaatcacaactcaaaaaatcccagtaatttctgatttgcgtgatcttcaagcagttttctgctattcaacttgctttaaatcgcaccgtattgcagTTTGCAAAGAAGCTGTTTTAGGGTTTGGTG
AAGGTTGGGGTTTTTTTATTCAAGATTGTTTTCTCCAGAGAAACTTTGGTGATGGCGATTCCGAAAATGGTAGCAGCGGGCAAAGGGCAGTGGATGGAAATTGCTCCTTCCCGGAAGGAATGCGTGTTGAAACGGTGGCCTTCTGGAAAAAAGCTGCTAACGATCACAGAGGGGCGGAGTCTGAGCAATGGCGAGCTCAT
GGATGGCCTACAACCTGCCTTTCCTGCGGTCTCTGACTTCCAAGCGAAGGGCGAAGGGCGGTAATGGAAG