sp|Q9FPT5|UBP1_ARATH ----> Ubiquitin carboxyl-terminal hydrolase 1


Intron 1 GTAAATCGTC ... CATGCTGTAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A154.72241939
A271.9173156
A371.79112927
A473.5872019
A57582622
A6100020
A750426
A8100011
A963.64243
A1048.57998



>TRINITY_DN43484_c0_g1_i3 from sample A10 / Example spliced isoform
ATCGATTTCGACATTCAATTCTGGAGGAATTTTTCCTTTGACAAATCCTGTTGCTATTAGCAGATCCATTATCATTTTCAATCGACGGCAATGGCAGGGAAATGTTTTGAGTAGTTGGTGATGGCGTCTTACTGCAAGTGGTCGGAGCTTCTCACAGCCTTGGGGCGTCTTACAGGAACTGGAGTTGATAAATTGCAAAA
CAACCAATGCATGTTAGTAGGAAGTAAGAATGAGGATTGAAAACTGAGAGTAAAAACCAAAAGAACGGTGTCAAGCGGTAAATCAAGTGATCTTGTTTACAGAGATCCTCTTCAATCCCCAGCACACATGATGCCCTAATTGGGCATCATGTATTATCCTGTAATATCTCAAGTTAATTGAGATTAGGAGCTGTCCTAGG
CAGTGCTCGTGAAGAAAGGTAAGGTGCAATTCCTGGATGATTAAATATCTTTAGTTCGTGGCATCGGAGATAGAGCTCATTTACAAAAAAATTCAAAATGAAGAGGGATTCATTATCTGCTGTAGAGAATCCTATAACCACAACTGAAATCAGTGAAAAACCAGGAGAATGGAAAGGGAAGCCTTGCAAGCATTTAGCAA
AAGGCATCGACATAGAGAAGCTTGCAGCTCAGATTGCACGAGTTTCGCTTTTGCAGTGTCAGGGATGTGTGCAGATCACCAAGGGCAGTAGAAGCTCGAAGGACAAGAAGGAAAAGTCATGGAAACAATCCAAGAAGAAAACAGCTCCAGCTTCAGATTTGTGTACTGATGGGTGGCCAAGGACGTGGGTGTGTCTGGCC
TGTGGTCTTGTGGGTTGTGGAAGTATTTCTATTTCCAGCCCTTCGTCAGACGAAGGTGGTGGAGGAATGGAAGAGAGCATAGGCACTGGTCATGCTTGGAAACACTGGCTTTGTGAGTTCCATCCCTATGTGTTGCAGTGTGGCCACAAGCTTTCTTGCTGGTGTTTTCCTTGTAGATCCTATCTGGAATTTCGTTTTAT
CAAGCAGTCTGCTGATGCAGAGCAGGACAAGCATGGATTGGTGATGGTGGGTCCTTCGGCAAGTTCATTGATGTTGCAGGCCTTGAAGGTTGTCCAGGAGAAGCTCATCAAGGAATCTGCAAAGTTTGAGCAGATTCGGCTTGTTGATGCTGTTGTTGAGAAGTGGCCAGATAAGGAGGAAGTCAAGGAAGCGGCAGTTG
TAGAGGTCCAAGAGGATGCAGTTAGTAGGAGGTGCGTGGTCAAGGGTCTAGTAAATCTGGGAAACACTTGCTTTTTCAATGCAGTTTTGCAGAATTTGTTTGCCATAAATGTGCTGAAGGATCATTTTGCTAAACCAGCGCAAGTTACAGAAGGGCATCTGACTGCCTGTTTGAGAAAATTGTATCTCGAAATGGCATTT
GAGGGGCAAGCAGCCAAGGATGTAGGGCAAGGGGACACAAGTGCTCATTTCAAAAAGAATGGAAAGGGGAGGGCATTACAAAATAGCAGTAATGGAGTGATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGACAGCCATGAGTTGTTGCGGTTCTTACTTGA
CTGCCTACATATGGAGGAATTGAATACAAGGAAACCTCAAAGTAGAAGTTCTGAGATTTTATCTGAAAATGGGGTTGATAGTATGCAAAAGCAGATAGATATGGATGCAAACCAGAAGAATAATTCATGTGAATTTCTGACCATGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTG
GATATTCTTCAGTAGTATTTGAGTCATATCTCGATCTGTCTTTACCTATTCCATCAAAACAAGAACGACAGAAAAATCCATTGTCTCAATTATATAGTAATTGGGCTTCCTCATCAGGGTTGAGAAAGGGATCAATAAAGACAAATTCATACAAAGATGATAAAAGTAGGAAGGAAGGCTGGGGAAAGATAAATGACAGT
TTGGATTCATCTATAAATAAATCAGAGATAAACACAGAGGTGCCTCTGTGCACAGAAAATAGGTCAAGCTCATTTCCAGTTGGAAACATTGCCTCTGGAGATGATACATTAACTCCAAACATATCTGATCTTCCAGAAGATTTAGGATGGAAGGGGTATTTGGATACTTCAGCACAATCTGCAAATGTTGTGCATAATGG
GACTTTGAATGAATCAGAAATAATTGGGACTCCTGACTACAATAGAATATCTCAACGCATGTCAGAAATGGCATCGACCGTGAGAATTTCTGATTCTAAATCTGCTTTCCAGAATAAAGGTCTTATAAATCAGGAATCTGCATTTTCTCCCACAGAAACACCAGGGATTCTGAAGAAACATGTGCCGTCTACTGAAAGGG
ATTTGGGCGCTTCCAATAGGAAGGGTATGGTGCCCATGTCGGACTTGAAAGCTCATAATGATTTTGGACAACATGATGAGCCTCTTCCAATAACTGGGGACTCAGAAGTTCTGCCACATCCTTACAAGGATCTCAACGTGGCAGAGGAAGATATTCAAACAACTGAATGTTTTCACAAGTTATCTGTTGTAAGCACTGTT
GAAACTTTAGGCAAACTCTCCACAAATGAATCTGGATCTGAAATAGATCCCAAGGTTCTTGATGGAGAGTTTGATGGGTTTGCAAAAAGGTTTAATGAGGAAGGAACTTCCTTTGTTCGGAACATAGGATCAGAAGCTGGTGAATCTGAGAGTGTTCAACTAAATGAAGAATACGGTGGAGATGATATATGGGAGACAGA
TTTAGCCATTGACACTTTAGAAGGCAATGGAACAAACAAGGCTAAACCTGAAGATATTCTTCCAATATCCATTGATGGTTGTTTGGCTGCTTTTACAAGGCCAGAGATTCTTTGGGGTGAAAATGCATGGCAGTGTGAAAGTTGTTCTTCTAGGATTTCCAAGGATTCTTTCAATGTAGAGGCAAAGCCAGAGCAAGATA
AGAAAGTTCATTATAAACCAACTGTTATGTCAGCAAGGTATAGTGGAGGTACATACAAGGAGCAGATGCATTTAGTAGCTGGCAGGGGAAATATTGAGGGAGTGATGAACAGAAACTTTAGTAATATGCCCGAGAAACAGATGATAAATTCAGGAGATTCAACTACTTTAAGGTATGATAGAATACTGGATTCATTAAGG
AATGATGGAATACTGGATTTTGAAGGGGATATCTATAAACAGCTTCATTCATCATATTGCAATAAAAGACTGATGTCTAATTTGAATTCTCATACCCAGGAGCTCACAAAAAAGGAAGGTAAAATGCTTCAGTATGCTGGTAGGTCCAATGATTTGGACGTTAGCCATACAAACAATCAAAGAAGTTATATTTTTCCCTG
TAGAAGCATTGGCATAGGTAACTCATGTGACAATAATTCAAATGAATTTTCTGGTCATGGGGATTTTCCTGTTAAAACAGGAAGGATTTTTGATGTGAAAAATCCACTAGTTACCAAGGCTGAGACATGTCCAGAAAATGACAAATCAGTCGTCGCACATATAGACCCTTCTATCTGTAGCAAAATGTCAAAGGCCAAAC
AAACTTGTGCAGTCTTGGGTAGAGACGTATTTGATTCCAAAGATTCTGTCCTCAAGATTGATGAACTTCAAAATGAAGCTTTGAGATCATCTTGGGGAAAAGCAAGACTGAAGGGAAGTAAATCTAAGGAAAAGAAAAATGGGCTAAAGGGATTAAAGCGCAATGCAACTAAAGTACTTCTTATCAGCAAGGCGCCACGT
ATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTATCAAATTGAACAGTCATGTTACTTTTCAAGATAAGCTTGACCTGAGGCCGTTTCTAGACCCCAGGTGTCCAGATAAAGAAAGCTGTATCTATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGG
TCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGTTCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTG
GTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAGATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTG
TTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAAAGGATCACTTGGTTTTATAGTCTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCC
CCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATCATGGTAATCTTCTGTTCTTAATTTCCATTTTACATTGAAG


>TRINITY_DN43484_c0_g1_i1 from sample A10 / Example unspliced isoform:
ATCGATTTCGACATTCAATTCTGGAGGAATTTTTCCTTTGACAAATCCTGTTGCTATTAGCAGATCCATTATCATTTTCAATCGACGGCAATGGCAGGGAAATGTTTTGAGTAGTTGGTGATGGCGTCTTACTGCAAGTGGTCGGAGCTTCTCACAGCCTTGGGGCGTCTTACAGgtaaatcgtcctccagccttggggt
ttacataagattggcacaatgagttttcatgatgtatggtgaatctcgtgtacaatgcatgctgtag
GAACTGGAGTTGATAAATTGCAAAACAACCAATGCATGTTAGTAGGAAGTAAGAATGAGGATTGAAAACTGAGAGTAAAAACCAAAAGAACGGTGTCAAGCGGTAAATCAAGTGATCTTGTTTACAGAGATCC
TCTTCAATCCCCAGCACACATGATGCCCTAATTGGGCATCATGTATTATCCTGTAATATCTCAAGTTAATTGAGATTAGGAGCTGTCCTAGGCAGTGCTCGTGAAGAAAGGTAAGGTGCAATTCCTGGATGATTAAATATCTTTAGTTCGTGGCATCGGAGATAGAGCTCATTTACAAAAAAATTCAAAATGAAGAGGGA
TTCATTATCTGCTGTAGAGAATCCTATAACCACAACTGAAATCAGTGAAAAACCAGGAGAATGGAAAGGGAAGCCTTGCAAGCATTTAGCAAAAGGCATCGACATAGAGAAGCTTGCAGCTCAGATTGCACGAGTTTCGCTTTTGCAGTGTCAGGGATGTGTGCAGATCACCAAGGGCAGTAGAAGCTCGAAGGACAAGA
AGGAAAAGTCATGGAAACAATCCAAGAAGAAAACAGCTCCAGCTTCAGATTTGTGTACTGATGGGTGGCCAAGGACGTGGGTGTGTCTGGCCTGTGGTCTTGTGGGTTGTGGAAGTATTTCTATTTCCAGCCCTTCGTCAGACGAAGGTGGTGGAGGAATGGAAGAGAGCATAGGCACTGGTCATGCTTGGAAACACTGG
CTTTGTGAGTTCCATCCCTATGTGTTGCAGTGTGGCCACAAGCTTTCTTGCTGGTGTTTTCCTTGTAGATCCTATCTGGAATTTCGTTTTATCAAGCAGTCTGCTGATGCAGAGCAGGACAAGCATGGATTGGTGATGGTGGGTCCTTCGGCAAGTTCATTGATGTTGCAGGCCTTGAAGGTTGTCCAGGAGAAGCTCAT
CAAGGAATCTGCAAAGTTTGAGCAGATTCGGCTTGTTGATGCTGTTGTTGAGAAGTGGCCAGATAAGGAGGAAGTCAAGGAAGCGGCAGTTGTAGAGGTCCAAGAGGATGCAGTTAGTAGGAGGTGCGTGGTCAAGGGTCTAGTAAATCTGGGAAACACTTGCTTTTTCAATGCAGTTTTGCAGAATTTGTTTGCCATAA
ATGTGCTGAAGGATCATTTTGCTAAACCAGCGCAAGTTACAGAAGGGCATCTGACTGCCTGTTTGAGAAAATTGTATCTCGAAATGGCATTTGAGGGGCAAGCAGCCAAGGATGTAGGGCAAGGGGACACAAGTGCTCATTTCAAAAAGAATGGAAAGGGGAGGGCATTACAAAATAGCAGTAATGGAGTGATAGATCCT
AGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGACAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATGGAGGAATTGAATACAAGGAAACCTCAAAGTAGAAGTTCTGAGATTTTATCTGAAAATGGGGTTGATAGTATGCAAAAGCAGATAGATATGGATGC
AAACCAGAAGAATAATTCATGTGAATTTCTGACCATGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGATATTCTTCAGTAGTATTTGAGTCATATCTCGATCTGTCTTTACCTATTCCATCAAAACAAGAACGACAGAAAAATCCATTGTCTCAATTATATAGTAATTGGGCTT
CCTCATCAGGGTTGAGAAAGGGATCAATAAAGACAAATTCATACAAAGATGATAAAAGTAGGAAGGAAGGCTGGGGAAAGATAAATGACAGTTTGGATTCATCTATAAATAAATCAGAGATAAACACAGAGGTGCCTCTGTGCACAGAAAATAGGTCAAGCTCATTTCCAGTTGGAAACATTGCCTCTGGAGATGATACA
TTAACTCCAAACATATCTGATCTTCCAGAAGATTTAGGATGGAAGGGGTATTTGGATACTTCAGCACAATCTGCAAATGTTGTGCATAATGGGACTTTGAATGAATCAGAAATAATTGGGACTCCTGACTACAATAGAATATCTCAACGCATGTCAGAAATGGCATCGACCGTGAGAATTTCTGATTCTAAATCTGCTTT
CCAGAATAAAGGTCTTATAAATCAGGAATCTGCATTTTCTCCCACAGAAACACCAGGGATTCTGAAGAAACATGTGCCGTCTACTGAAAGGGATTTGGGCGCTTCCAATAGGAAGGGTATGGTGCCCATGTCGGACTTGAAAGCTCATAATGATTTTGGACAACATGATGAGCCTCTTCCAATAACTGGGGACTCAGAAG
TTCTGCCACATCCTTACAAGGATCTCAACGTGGCAGAGGAAGATATTCAAACAACTGAATGTTTTCACAAGTTATCTGTTGTAAGCACTGTTGAAACTTTAGGCAAACTCTCCACAAATGAATCTGGATCTGAAATAGATCCCAAGGTTCTTGATGGAGAGTTTGATGGGTTTGCAAAAAGGTTTAATGAGGAAGGAACT
TCCTTTGTTCGGAACATAGGATCAGAAGCTGGTGAATCTGAGAGTGTTCAACTAAATGAAGAATACGGTGGAGATGATATATGGGAGACAGATTTAGCCATTGACACTTTAGAAGGCAATGGAACAAACAAGGCTAAACCTGAAGATATTCTTCCAATATCCATTGATGGTTGTTTGGCTGCTTTTACAAGGCCAGAGAT
TCTTTGGGGTGAAAATGCATGGCAGTGTGAAAGTTGTTCTTCTAGGATTTCCAAGGATTCTTTCAATGTAGAGGCAAAGCCAGAGCAAGATAAGAAAGTTCATTATAAACCAACTGTTATGTCAGCAAGGTATAGTGGAGGTACATACAAGGAGCAGATGCATTTAGTAGCTGGCAGGGGAAATATTGAGGGAGTGATGA
ACAGAAACTTTAGTAATATGCCCGAGAAACAGATGATAAATTCAGGAGATTCAACTACTTTAAGGTATGATAGAATACTGGATTCATTAAGGAATGATGGAATACTGGATTTTGAAGGGGATATCTATAAACAGCTTCATTCATCATATTGCAATAAAAGACTGATGTCTAATTTGAATTCTCATACCCAGGAGCTCACA
AAAAAGGAAGGTAAAATGCTTCAGTATGCTGGTAGGTCCAATGATTTGGACGTTAGCCATACAAACAATCAAAGAAGTTATATTTTTCCCTGTAGAAGCATTGGCATAGGTAACTCATGTGACAATAATTCAAATGAATTTTCTGGTCATGGGGATTTTCCTGTTAAAACAGGAAGGATTTTTGATGTGAAAAATCCACT
AGTTACCAAGGCTGAGACATGTCCAGAAAATGACAAATCAGTCGTCGCACATATAGACCCTTCTATCTGTAGCAAAATGTCAAAGGCCAAACAAACTTGTGCAGTCTTGGGTAGAGACGTATTTGATTCCAAAGATTCTGTCCTCAAGATTGATGAACTTCAAAATGAAGCTTTGAGATCATCTTGGGGAAAAGCAAGAC
TGAAGGGAAGTAAATCTAAGGAAAAGAAAAATGGGCTAAAGGGATTAAAGCGCAATGCAACTAAAGTACTTCTTATCAGCAAGGCGCCACGTATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTATCAAATTGAACAGTCATGTTACTTTTCAAGATAAGCTTGACCTGAGGCCGTTTCTAGACCCCAGGTGT
CCAGATAAAGAAAGCTGTATCTATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGT
TCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAG
ATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAA
AGGATCACTTGGTTTTATAGTCTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATC
ATGGTAATCTTCTGTTCTTAATTTCCATTTTACATTGAAG




Intron 2 GTAAGTTAGA ... TAGATGGGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1100052
A255.56450
A386.214254
A40300
A5100064
A631.251152
A7351371
A868.426135
A951.8513143
A1060.9816250



>TRINITY_DN42223_c2_g1_i5 from sample A9 / Example spliced isoform
ATAGACCTGAGAGAGGGTTTCCGTGGAGTCATTGGACACTTGGCTGCCTTCTTCTTGACGGTGGGTCTGGGATTGAGATCTGGATTCTGAAACATATATTGGTAAAGCAGCATGGACGCTTGAAGCGCTGGATGGACGTAATGAAGCACAGGCTGGGCAGGTCTGTATATGGGCAAGCAGGTGTCTCGTTTGGCTGGGCT
AGGCTTGGTAAGTTAGATGGGAGGGCAGGTCTGTATTTGGGCTGGCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGCTGGGCTTGGGCAATTACAGATGATTCATGAAGCACTAAAACTGGAATTGAAAAATTAATTCTTCAATCCAGTGTCTATTAATCGGGATCTTCTGTTATTCATGAAAAACTATATTAATGAGAAG
TAAAGAATCTGATCTTCAATCC


>TRINITY_DN42223_c2_g1_i11 from sample A9 / Example unspliced isoform:
GAGGATTTTACATTTTCTAGGAAGGATTTTATATTTCTGTACTGATTCCTTTAAAGCCGTTGGATGGTCATGAAGGCTGTGCAATCTCTCCGTTCATTTCTATGCTCTATCCTTGCTTCATGAGGCTCTGTGTGGTCTGGTTTATCAGGGTTTGAAGCGTTTTCATGTTTCCCTATTTGTCATGTATCGTCGTTACTTGC
GAAAGATAGACCTGAGAGAGGGTTTCCGTGGAGTCATTGGACACTTGGCTGCCTTCTTCTTGACGGTGGGTCTGGGATTGAGATCTGGATTCTGAAACATATATTGGGTAAGCAATTCAATCACATACATTATGAAACCTTGCATTTATTTAACTTTGTTGTTCTCAATATTAAGTTTCTTCGTTGTGAAGTAAAGCAGC
ATGGACGCTTGAAGCGCTGGATGGACGTAATGAAGCACAGGCTGGGCAGGTCTGTATATGGGCAAGCAGGTGTCTCGTTTGGCTGGGCTAGGCTTGGTAAGTTAGATGGGAGGGCAGGTCTGTATTTGGGCTGGCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGCTGGGCTTGgtaagttagatgagagggcaggtctgt
atttgggctctctgggcaggcaggtgtctcgtttggctgggttgggcttggtaagttagatgggag
GGCAATTACAGATGATTCATGAAGCACTAAAACTGGAA




Intron 3 GTACCATGTC ... AATCTAACAG

Found issues: Low number of reads   


SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A171.43114
A2100003
A347.37554
A433.33404
A577.78277
A650204
A7100011
A855.56205
A960233
A1033.33101



>TRINITY_DN42223_c2_g1_i9 from sample A9 / Example spliced isoform
AGCTTATTGAAATCTTAAATAACTACAGAATCCGTATTCTGAATAGATTTTTCCATTTGAAAATTCATTTTCCACCAGTCTCAGTCCATGATCCACATTGTCCTCACGTCCCTGAAACCGAAAGCAGGCTTTTCCTTATGGGTGTTTAATCCAGGTGCCAGTGCTTGACATAGGCTCTCGAGGCCCTGTGATGAATTTTT
CGATTCAGGTAAGGAATTTGATGTCTATGCAAAAGTGGTAGTGAATGCTGCTGGACCTTTTTGCGATAAAGTGAGGAAAATGGCTGACAAAGATGCACAAAATATCATTTGCCCCAGTAGTGGAGTGCATATTATCCTCCCTGATTATTATTCTCCAGAGGGCATGGGTTTAATTGTACCTAAAACAAAAGATGGAAGGG
TGATATTTATGCTTCCTTGGCTTGGAAGGACAGTGGCAGGGACTACAGATTCCGGTACGACTTTAACAATGCTCCCAGAACCCCAAGAAGAAGAGATTCAGTTCATTTTGGATGCGATCAGTGATTACTTGAATGTTAAGGTACGCCGATCAGATGTGCTGTCCGCTTGGAGTGGAATTCGTCCATTGGCAACTGATCCC
TCAGCTAATGACACTGCCAGCATCTCTAGAGATCATGTGGTGTCCACAGATTTGAGTGGGCTTGTTACTATCACTGGTGGAAAGTGGACTACATATAGAAGCATGGCAGAGGATGCAGTTAATGCAGCGATTAAGGTTGGGAAATTGGGCCCATCAAATGACTGTGTAACAGCTCATCTCAAAATTGTTGGAGGAGATCA
ATGGAACCCTGCTTCTTTTACAGAACTTGCGCAGCAATATGTTCGCATGAAGAAAACACATTCAGGGAAGATTGTTCCTGGGACAATGGACACTGCTGTTGCCAAACATTTGGCACATGCATATGGTTTTATGGCAGAAAGAGTTGCATCAATAGCACAGAATGAAAATTTGGGCAAAAGATTAGCACATGGATATTCTT
TTCTGGAGGCAGAGGTGGCTTACTGTGCACGGAATGAGTACTGTGAGACAGCAGTTGACTTTATTGCTAGGCGATCAAGGCTCGCCTTTCTTGACACAGATGCAGCTGGAAGAGCTTTGCCTCGTGTTATTGATATACTTGCTACAGAACATGGTTGGGACAAAGCACGAAAGAAAGCAGAGATGGCAAATGCGAAAGCT
TTCTTAGAAACATTCAAGTCTTCTCAAAATGCTCAATTTGATGACGGAAAACACAGCTCCAGTAAGTCAATATTCTCCCTTCTCAAGACATAACGAGAAATCTTGTTATCTTGGGATTAAAGATTCAATCTACATAGCTGTTCCAAAAGCTACTCTGCTTCAGCATGTGCATCTCATCCATTAGTGATTGAAAATAATAC
CTTCAAGTGAAGGCTCCAGATGGAAAGTTTCATTTTCTCAAGCGGGTTTTGCTGGTACAGAGAAGATATACATATATCTATTACAAGCAATTATTCAGTAGTGGGATTATATGAATGTAATTGTTCCCTTTATGAGTTCATATTTTGTGAGCTGGTGAAAATCGTTTGACAATAGTTTTGGTCTAGTAAGAAGTAGCTAA
CTGGAGAGCATAAAGAATGCTAAAGAGGGCTTGATGTCTAGAAGTTCAAATACCATGTATGCATTACCTGAGTTGATATTGTGAAGGATATTAATTGATTAAAATATTAACCATTTGCTGAAAATCTACAGATTCACAGAACTTGCTGAGAAGGGAATGTTTTTAACCTAATTATCATAAACAATAAAC


>TRINITY_DN42223_c2_g1_i13 from sample A9 / Example unspliced isoform:
AGCTTATTGAAATCTTAAATAACTACAGAATCCGTATTCTGAATAGATTTTTCCATTTGAAAATTCATTTTCCACCAGTCTCAGTCCATGATCCACATTGTCCTCACGTCCCTGAAACCGAAAGCAGGCTTTTCCTTATGGGTGTTTAATCCAGGTGCCAGTGCTTGACATAGGCTCTCGAGGCCCTGTGATGAATTTTT
CGATTCAGgtaccatgtcttctaatcaagcgagactaactaatggaatacgaattagttaaaggatttgtttcaggtactatcttttctattcaagggagactcgctgatggcatgagttagataaagatatattggttacgtatgcttttttctatatatacctaaaaccttttcctaacctgcaatagtaaggtgtgg
aaaagaaacaaaaactgatcaattgatatggtggtactgccctgctatctttagaaacagaaagggctgctgttagcccatgtcagggtctccattagtgtcaaattgattcataaggggggagaaaacctatcattttttctgagaacccatttggttttcagtcctaaaattagttttaaagcaggcagctatgcctc
ggtttagcctgcgccaggctgcagccattgtggcagcaggctctctgggcattgcaggtgtttacaatgggactgcattaggcagcgaaaaaagtggcctagaatctgccaggaggagaattcagacgagtgatggggttgtcccttcaagagatgtgcaggagtctgcattgaaaggaagcagtcccaacagtcctcta
gacatgctcatcattggagggggagctacaggatgtggggtggctctggatgccgcaactcgtggtctgcgagttgggctagtcgaaagagatgatttctcttcggggacttcgtcgcggtccaccaagctgattcatggaggagtccgctatttggaaaaggcagttttcaatcttgattatggacaactgaaactggt
ctttcatgctcttgaggagcgggatcgtattattaaaaatgcaccacatctgtgccatgctttgccaactatgacaccctgttatgactggtttgaagtcttatattattgggctgggctaaaattttatgatctagttgcaggaacacgaatgctgcatttatcacgatattgttctgcaaaggaatctattgaactct
ttccaactcttgcaaaaaagggccatggtaaaagcttgaaggctacagtaatttattatgatggtcaaatgaatgacgcacgcctcaatgttggcttggcttgcacggctgcattagtgggtgcagcagtgcttaatcatgcagaagccatatcacttcacagggatgaacttactaaccaaatcataggtgcacgcatt
aggaataatctaacag
GTAAGGAATTTGATGTCTATGCAAAAGTGGTAGTGAATGCTGCTGGACCTTTTTGCGATAAAGTGAGGAAAATGGCTGACAAAGATGCACAAAATATCATTTGCCCCAGTAGTGGAGTGCATATTATCCTCCCTGATTATTATTCTCCAGAGGGCATGGGTTTAATTGTACCTAAAACAAAAGA
TGGAAGGGTGATATTTATGCTTCCTTGGCTTGGAAGGACAGTGGCAGGGACTACAGATTCCGGTACGACTTTAACAATGCTCCCAGAACCCCAAGAAGAAGAGATTCAGTTCATTTTGGATGCGATCAGTGATTACTTGAATGTTAAGGTACGCCGATCAGATGTGCTGTCCGCTTGGAGTGGAATTCGTCCATTGGCAA
CTGATCCCTCAGCTAATGACACTGCCAGCATCTCTAGAGATCATGTGGTGTCCACAGATTTGAGTGGGCTTGTTACTATCACTGGTGGAAAGTGGACTACATATAGAAGCATGGCAGAGGATGCAGTTAATGCAGCGATTAAGGTTGGGAAATTGGGCCCATCAAATGACTGTGTAACAGCTCATCTCAAAATTGTTGGA
GGAGATCAATGGAACCCTGCTTCTTTTACAGAACTTGCGCAGCAATATGTTCGCATGAAGAAAACACATTCAGGGAAGATTGTTCCTGGGACAATGGACACTGCTGTTGCCAAACATTTGGCACATGCATATGGTTTTATGGCAGAAAGAGTTGCATCAATAGCACAGAATGAAAATTTGGGCAAAAGATTAGCACATGG
ATATTCTTTTCTGGAGGCAGAGGTGGCTTACTGTGCACGGAATGAGTACTGTGAGACAGCAGTTGACTTTATTGCTAGGCGATCAAGGCTCGCCTTTCTTGACACAGATGCAGCTGGAAGAGCTTTGCCTCGTGTTATTGATATACTTGCTACAGAACATGGTTGGGACAAAGCACGAAAGAAAGCAGAGATGGCAAATG
CGAAAGCTTTCTTAGAAACATTCAAGTCTTCTCAAAATGCTCAATTTGATGACGGAAAACACAGCTCCAGTAAGTCAATATTCTCCCTTCTCAAGACATAACGAGAAATCTTGTTATCTTGGGATTAAAGATTCAATCTACATAGCTGTTCCAAAAGCTACTCTGCTTCAGCATGTGCATCTCATCCATTAGTGATTGAA
AATAATACCTTCAAGTGAAGGCTCCAGATGGAAAGTTTCATTTTCTCAAGCGGGTTTTGCTGGTACAGAGAAGATATACATATATCTATTACAAGCAATTATTCAGTAGTGGGATTATATGAATGTAATTGTTCCCTTTATGAGTTCATATTTTGTGAGCTGGTGAAAATCGTTTGACAATAGTTTTGGTCTAGTAAGAA
GTAGCTAACTGGAGAGCATAAAGAATGCTAAAGAGGGCTTGATGTCTAGAAGTTCAAATACCATGTATGCATTACCTGAGTTGATATTGTGAAGGATATTAATTGATTAAAATATTAACCATTTGCTGAAAATCTACAGATTCACAGAACTTGCTGAGAAGGGAATGTTTTTAACCTAATTATCATAAACAATAAAC




Intron 4 GTGGATAAAC ... AATAAGGAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A1201050
A226.32741
A318.18940
A410.341312
A550102
A6301466
A727.93401813
A8251893
A930.1229169
A1013.643866



>TRINITY_DN42223_c2_g1_i15 from sample A9 / Example spliced isoform
GAAAGGAGTGCATAGCCCATGTGACAGTAAAACCCTAGGCAATATTGCTATAAATCGTTGCCGTCCTCTTGTTTTTGAAAAGTATGGGTATATTTGGGTTGCGAACGTGGCTTGCATCCGTGTCCCCTCACAAACCTATGGAACGTCCACACGTGTATCCGTGATCATGCCAACAAAACTTCGTATCTTCAAACTGACAC
TGCGGAGTCAAATCGATTTCGACATTCAATTCTGGAGGAATTTTTCCTTTGACAAATCCTGTTGCTATTAGCAGATCCATTATCATTTTCAATCGACGGCAATGGCAGGGAAATGTTTTGAGTAGTTGGTGATGGCGTCTTACTGCAAGTGGTCGGAGCTTCTCACAGCCTTGGGGCGTCTTACAGGTAAATCGTCCTCC
AGCCTTGGGGTTTACATAAGATTGGCACAATGAGTTTTCATGATGTATGGTGAATCTCGTGTACAATGCATGCTGTAGGAACTGGAGTTGATAAATTGCAAAACAACCAATGCATGTTAGTAGGAAGTAAGAATGAGGATTGAAAACTGAGAGTAAAAACCAAAAGAACGGTGTCAAGCGGTAAATCAAGTGATCTTGTT
TACAGAGATCCTCTTCAATCCCCAGCACACATGATGCCCTAATTGGGCATCATGTATTATCCTGTAATATCTCAAGTTAATTGAGATTAGGAGCTGTCCTAGGCAGTGCTCGTGAAGAAAGGTAAGGTGCAATTCCTGGATGATTAAATATCTTTAGTTCGTGGCATCGGAGATAGAGCTCATTTACAAAAAAATTCAAA
ATGAAGAGGGATTCATTATCTGCTGTAGAGAATCCTATAACCACAACTGAAATCAGTGAAAAACCAGGAGAATGGAAAGGGAAGCCTTGCAAGCATTTAGCAAAAGGCATCGACATAGAGAAGCTTGCAGCTCAGATTGCACGAGTTTCGCTTTTGCAGTGTCAGGGATGTGTGCAGATCACCAAGGGCAGTAGAAGCTC
GAAGGACAAGAAGGAAAAGTCATGGAAACAATCCAAGAAGAAAACAGCTCCAGCTTCAGATTTGTGTACTGATGGGTGGCCAAGGACGTGGGTGTGTCTGGCCTGTGGTCTTGTGGGTTGTGGAAGTATTTCTATTTCCAGCCCTTCGTCAGACGAAGGTGGTGGAGGAATGGAAGAGAGCATAGGCACTGGTCATGCTT
GGAAACACTGGCTTTGTGAGTTCCATCCCTATGTGTTGCAGTGTGGCCACAAGCTTTCTTGCTGGTGTTTTCCTTGTAGATCCTATCTGGAATTTCGTTTTATCAAGCAGTCTGCTGATGCAGAGCAGGACAAGCATGGATTGGTGATGGTGGGTCCTTCGGCAAGTTCATTGATGTTGCAGGCCTTGAAGGTTGTCCAG
GAGAAGCTCATCAAGGAATCTGCAAAGTTTGAGCAGATTCGGCTTGTTGATGCTGTTGTTGAGAAGTGGCCAGATAAGGAGGAAGTCAAGGAAGCGGCAGTTGTAGAGGTCCAAGAGGATGCAGTTAGTAGGAGGTGCGTGGTCAAGGGTCTAGTAAATCTGGGAAACACTTGCTTTTTCAATGCAGTTTTGCAGAATTT
GTTTGCCATAAATGTGCTGAAGGATCATTTTGCTAAACCAGCGCAAGTTACAGAAGGGCATCTGACTGCCTGTTTGAGAAAATTGTATCTCGAAATGGCATTTGAGGGGCAAGCAGCCAAGGATGTAGGGCAAGGGGACACAAGTGCTCATTTCAAAAAGAATGGAAAGGGGAGGGCATTACAAAATAGCAGTAATGGAG
TGATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGACAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATGGAGGAATTGAATACAAGGAAACCTCAAAGTAGAAGTTCTGAGATTTTATCTGAAAATGGGGTTGATAGTATGCAAAAGCAGATA
GATATGGATGCAAACCAGAAGAATAATTCATGTGAATTTCTGACCATGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGATATTCTTCAGTAGTATTTGAGTCATATCTCGATCTGTCTTTACCTATTCCATCAAAACAAGAACGACAGAAAAATCCATTGTCTCAATTATATAG
TAATTGGGCTTCCTCATCAGGGTTGAGAAAGGGATCAATAAAGACAAATTCATACAAAGATGATAAAAGTAGGAAGGAAGGCTGGGGAAAGATAAATGACAGTTTGGATTCATCTATAAATAAATCAGAGATAAACACAGAGGTGCCTCTGTGCACAGAAAATAGGTCAAGCTCATTTCCAGTTGGAAACATTGCCTCTG
GAGATGATACATTAACTCCAAACATATCTGATCTTCCAGAAGATTTAGGATGGAAGGGGTATTTGGATACTTCAGCACAATCTGCAAATGTTGTGCATAATGGGACTTTGAATGAATCAGAAATAATTGGGACTCCTGACTACAATAGAATATCTCAACGCATGTCAGAAATGGCATCGACCGTGAGAATTTCTGATTCT
AAATCTGCTTTCCAGAATAAAGGTCTTATAAATCAGGAATCTGCATTTTCTCCCACAGAAACACCAGGGATTCTGAAGAAACATGTGCCGTCTACTGAAAGGGATTTGGGCGCTTCCAATAGGAAGGGTATGGTGCCCATGTCGGACTTGAAAGCTCATAATGATTTTGGACAACATGATGAGCCTCTTCCAATAACTGG
GGACTCAGAAGTTCTGCCACATCCTTACAAGGATCTCAACGTGGCAGAGGAAGATATTCAAACAACTGAATGTTTTCACAAGTTATCTGTTGTAAGCACTGTTGAAACTTTAGGCAAACTCTCCACAAATGAATCTGGATCTGAAATAGATCCCAAGGTTCTTGATGGAGAGTTTGATGGGTTTGCAAAAAGGTTTAATG
AGGAAGGAACTTCCTTTGTTCGGAACATAGGATCAGAAGCTGGTGAATCTGAGAGTGTTCAACTAAATGAAGAATACGGTGGAGATGATATATGGGAGACAGATTTAGCCATTGACACTTTAGAAGGCAATGGAACAAACAAGGCTAAACCTGAAGATATTCTTCCAATATCCATTGATGGTTGTTTGGCTGCTTTTACA
AGGCCAGAGATTCTTTGGGGTGAAAATGCATGGCAGTGTGAAAGTTGTTCTTCTAGGATTTCCAAGGATTCTTTCAATGTAGAGGCAAAGCCAGAGCAAGATAAGAAAGTTCATTATAAACCAACTGTTATGTCAGCAAGGTATAGTGGAGGTACATACAAGGAGCAGATGCATTTAGTAGCTGGCAGGGGAAATATTGA
GGGAGTGATGAACAGAAACTTTAGTAATATGCCCGAGAAACAGATGATAAATTCAGGAGATTCAACTACTTTAAGGTATGATAGAATACTGGATTCATTAAGGAATGATGGAATACTGGATTTTGAAGGGGATATCTATAAACAGCTTCATTCATCATATTGCAATAAAAGACTGATGTCTAATTTGAATTCTCATACCC
CGGAGCTCACAAAAAAGGAAGGTAAAATGCTTCAGTATGCTGGTAGGTCCAATGATTTGGACGTTAGCCATACAAACAATCAAAGAAGTTATATTTTTCCCTGTAGAAGCATTGGCATAGGTAACTCATGTGACAATAATTCAAATGAATTTTCTGGTCATGGGGATTTTCCTGTTAAAACAGGAAGGATTTTTGATGTG
AAAAATCCACTAGTTACCAAGGCTGAGACATGTCCAGAAAATGACAAATCAGTCGTCGCACATATAGACCCTTCTATCTGTAGCAAAATGTCAAAGGCCAAACAAACTTGTGCAGTCTTGGGTAGAGACGTATTTGATTCCAAAGATTCTGTCCTCAAGATTGATGAACTTCAAAATGAAGCTTTGAGATCATCTTGGGG
AAAAGCAAGACTGAAGGGAAGTAAATCTAAGGAAAAGAAAAATGGGCTAAAGGGATTAAAGCGCAATGCAACTAAAGTACTTCTTATCAGCAAGGCGCCACGTATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTATCAAATTGAACAGTCATGTTACTTTTCAAGATAAGCTTGACCTGAGGCCGTTTCTAG
ACCCCAGGTGTCCAGATAAAGAAAGCTGTATCTATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCC
CTTTCAGAGGTTCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTC
TGCAGCCAAAGATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGC
TTTTGCATAAAAGGATCACTTGGTTTTATAGTCTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATG
GATACAGCATCATGGTAATCTTCTGTTCTTAATTTCCATTTTACATTGAAGGGCACTGTGCAAGTCCAATGGCTTTATTAGTAATGCAGGATGCATTTGAACTTAGACATGAATATGTGGATAATTAGAATTTCAAAGGTTAGAGACCCA


>TRINITY_DN42223_c2_g1_i3 from sample A9 / Example unspliced isoform:
GAAAGGAGTGCATAGCCCATGTGACAGTAAAACCCTAGGCAATATTGCTATAAATCGTTGCCGTCCTCTTGTTTTTGAAAAGTATGGGTATATTTGGGTTGCGAACGTGGCTTGCATCCGTGTCCCCTCACAAACCTATGGAACGTCCACACGTGTATCCGTGATCATGCCAACAAAACTTCGTATCTTCAAACTGACAC
TGCGGAGTCAAATCGATTTCGACATTCAATTCTGGAGGAATTTTTCCTTTGACAAATCCTGTTGCTATTAGCAGATCCATTATCATTTTCAATCGACGGCAATGGCAGGGAAATGTTTTGAGTAGTTGGTGATGGCGTCTTACTGCAAGTGGTCGGAGCTTCTCACAGCCTTGGGGCGTCTTACAGGTAAATCGTCCTCC
AGCCTTGGGGTTTACATAAGATTGGCACAATGAGTTTTCATGATGTATGGTGAATCTCGTGTACAATGCATGCTGTAGGAACTGGAGTTGATAAATTGCAAAACAACCAATGCATGTTAGTAGGAAGTAAGAATGAGGATTGAAAACTGAGAGTAAAAACCAAAAGAACGGTGTCAAGCGGTAAATCAAGTGATCTTGTT
TACAGAGATCCTCTTCAATCCCCAGCACACATGATGCCCTAATTGGGCATCATGTATTATCCTGTAATATCTCAAGTTAATTGAGATTAGGAGCTGTCCTAGGCAGTGCTCGTGAAGAAAGGTAAGGTGCAATTCCTGGATGATTAAATATCTTTAGTTCGTGGCATCGGAGATAGAGCTCATTTACAAAAAAATTCAAA
ATGAAGAGGGATTCATTATCTGCTGTAGAGAATCCTATAACCACAACTGAAATCAGTGAAAAACCAGGAGAATGGAAAGGGAAGCCTTGCAAGCATTTAGCAAAAGGCATCGACATAGAGAAGCTTGCAGCTCAGATTGCACGAGTTTCGCTTTTGCAGTGTCAGGGATGTGTGCAGATCACCAAGGGCAGTAGAAGCTC
GAAGGACAAGAAGGAAAAGTCATGGAAACAATCCAAGAAGAAAACAGCTCCAGCTTCAGATTTGTGTACTGATGGGTGGCCAAGGACGTGGGTGTGTCTGGCCTGTGGTCTTGTGGGTTGTGGAAGTATTTCTATTTCCAGCCCTTCGTCAGACGAAGGTGGTGGAGGAATGGAAGAGAGCATAGGCACTGGTCATGCTT
GGAAACACTGGCTTTGTGAGTTCCATCCCTATGTGTTGCAGTGTGGCCACAAGCTTTCTTGCTGGTGTTTTCCTTGTAGATCCTATCTGGAATTTCGTTTTATCAAGCAGTCTGCTGATGCAGAGCAGGACAAGCATGGATTGGTGATGGTGGGTCCTTCGGCAAGTTCATTGATGTTGCAGGCCTTGAAGGTTGTCCAG
GAGAAGCTCATCAAGGAATCTGCAAAGTTTGAGCAGATTCGGCTTGTTGATGCTGTTGTTGAGAAGTGGCCAGATAAGGAGGAAGTCAAGGAAGCGGCAGTTGTAGAGGTCCAAGAGGATGCAGTTAGTAGGAGGTGCGTGGTCAAGGGTCTAGTAAATCTGGGAAACACTTGCTTTTTCAATGCAGTTTTGCAGAATTT
GTTTGCCATAAATGTGCTGAAGGATCATTTTGCTAAACCAGCGCAAGTTACAGAAGGGCATCTGACTGCCTGTTTGAGAAAATTGTATCTCGAAATGGCATTTGAGGGGCAAGCAGCCAAGGATGTAGGGCAAGGGGACACAAGTGCTCATTTCAAAAAGAATGGAAAGGGGAGGGCATTACAAAATAGCAGTAATGGAG
TGATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGACAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATGGAGGAATTGAATACAAGGAAACCTCAAAGTAGAAGTTCTGAGATTTTATCTGAAAATGGGGTTGATAGTATGCAAAAGCAGATA
GATATGGATGCAAACCAGAAGAATAATTCATGTGAATTTCTGACCATGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGATATTCTTCAGTAGTATTTGAGTCATATCTCGATCTGTCTTTACCTATTCCATCAAAACAAGAACGACAGAAAAATCCATTGTCTCAATTATATAG
TAATTGGGCTTCCTCATCAGGGTTGAGAAAGGGATCAATAAAGACAAATTCATACAAAGATGATAAAAGTAGGAAGGAAGGCTGGGGAAAGATAAATGACAGTTTGGATTCATCTATAAATAAATCAGAGATAAACACAGAGGTGCCTCTGTGCACAGAAAATAGGTCAAGCTCATTTCCAGTTGGAAACATTGCCTCTG
GAGATGATACATTAACTCCAAACATATCTGATCTTCCAGAAGATTTAGGATGGAAGGGGTATTTGGATACTTCAGCACAATCTGCAAATGTTGTGCATAATGGGACTTTGAATGAATCAGAAATAATTGGGACTCCTGACTACAATAGAATATCTCAACGCATGTCAGAAATGGCATCGACCGTGAGAATTTCTGATTCT
AAATCTGCTTTCCAGAATAAAGGTCTTATAAATCAGGAATCTGCATTTTCTCCCACAGAAACACCAGGGATTCTGAAGAAACATGTGCCGTCTACTGAAAGGGATTTGGGCGCTTCCAATAGGAAGGGTATGGTGCCCATGTCGGACTTGAAAGCTCATAATGATTTTGGACAACATGATGAGCCTCTTCCAATAACTGG
GGACTCAGAAGTTCTGCCACATCCTTACAAGGATCTCAACGTGGCAGAGGAAGATATTCAAACAACTGAATGTTTTCACAAGTTATCTGTTGTAAGCACTGTTGAAACTTTAGGCAAACTCTCCACAAATGAATCTGGATCTGAAATAGATCCCAAGGTTCTTGATGGAGAGTTTGATGGGTTTGCAAAAAGGTTTAATG
AGGAAGGAACTTCCTTTGTTCGGAACATAGGATCAGAAGCTGGTGAATCTGAGAGTGTTCAACTAAATGAAGAATACGGTGGAGATGATATATGGGAGACAGATTTAGCCATTGACACTTTAGAAGGCAATGGAACAAACAAGGCTAAACCTGAAGATATTCTTCCAATATCCATTGATGGTTGTTTGGCTGCTTTTACA
AGGCCAGAGATTCTTTGGGGTGAAAATGCATGGCAGTGTGAAAGTTGTTCTTCTAGGATTTCCAAGGATTCTTTCAATGTAGAGGCAAAGCCAGAGCAAGATAAGAAAGTTCATTATAAACCAACTGTTATGTCAGCAAGGTATAGTGGAGGTACATACAAGGAGCAGATGCATTTAGTAGCTGGCAGGGGAAATATTGA
GGGAGTGATGAACAGAAACTTTAGTAATATGCCCGAGAAACAGATGATAAATTCAGGAGATTCAACTACTTTAAGGTATGATAGAATACTGGATTCATTAAGGAATGATGGAATACTGGATTTTGAAGGGGATATCTATAAACAGCTTCATTCATCATATTGCAATAAAAGACTGATGTCTAATTTGAATTCTCATACCC
CGGAGCTCACAAAAAAGGAAGGTAAAATGCTTCAGTATGCTGGTAGGTCCAATGATTTGGACGTTAGCCATACAAACAATCAAAGAAGTTATATTTTTCCCTGTAGAAGCATTGGCATAGGTAACTCATGTGACAATAATTCAAATGAATTTTCTGGTCATGGGGATTTTCCTGTTAAAACAGGAAGGATTTTTGATGTG
AAAAATCCACTAGTTACCAAGGCTGAGACATGTCCAGAAAATGACAAATCAGTCGTCGCACATATAGACCCTTCTATCTGTAGCAAAATGTCAAAGGCCAAACAAACTTGTGCAGTCTTGGGTAGAGACGTATTTGATTCCAAAGATTCTGTCCTCAAGATTGATGAACTTCAAAATGAAGCTTTGAGATCATCTTGGGG
AAAAGCAAGACTGAAGGGAAGTAAATCTAAGGAAAAGAAAAATGGGCTAAAGGGATTAAAGCGCAATGCAACTAAAGTACTTCTTATCAGCAAGGCGCCACGTATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTATCAAATTGAACAGTCATGTTACTTTTCAAGATAAGCTTGACCTGAGGCCGTTTCTAG
ACCCCAGgtggataaactggagtagagttcaacactgatataataaggaagGTGTCCAGATAAAGAAAGCTGTATCTATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAA
GCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGTTCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAA
CTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAGATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACA
CATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAAAGGATCACTTGGTTTTATAGTCTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTAT
CTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATCATGGTAATCTTCTGTTCTTAATTTCCATTTTACATTGAAGGGCACTGTGCAAGTCCAATGGCTTTATTAGTAATGCAGGATGCATTTGAACTTAGACATGAATATGTGGATAATTAGAATTTCAAAGGTTAGAGACCCA




Intron 5 GTAAGCAATT ... CGTTGTGAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A145.45682
A2100065
A363.2791813
A420822
A560466
A650.8814272
A752.9424477
A853.68223813
A943.6620229
A1042.22262315



>TRINITY_DN42223_c2_g1_i5 from sample A9 / Example spliced isoform
ATAGACCTGAGAGAGGGTTTCCGTGGAGTCATTGGACACTTGGCTGCCTTCTTCTTGACGGTGGGTCTGGGATTGAGATCTGGATTCTGAAACATATATTGGTAAAGCAGCATGGACGCTTGAAGCGCTGGATGGACGTAATGAAGCACAGGCTGGGCAGGTCTGTATATGGGCAAGCAGGTGTCTCGTTTGGCTGGGCT
AGGCTTGGTAAGTTAGATGGGAGGGCAGGTCTGTATTTGGGCTGGCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGCTGGGCTTGGGCAATTACAGATGATTCATGAAGCACTAAAACTGGAATTGAAAAATTAATTCTTCAATCCAGTGTCTATTAATCGGGATCTTCTGTTATTCATGAAAAACTATATTAATGAGAAG
TAAAGAATCTGATCTTCAATCC


>TRINITY_DN42223_c2_g1_i11 from sample A9 / Example unspliced isoform:
GAGGATTTTACATTTTCTAGGAAGGATTTTATATTTCTGTACTGATTCCTTTAAAGCCGTTGGATGGTCATGAAGGCTGTGCAATCTCTCCGTTCATTTCTATGCTCTATCCTTGCTTCATGAGGCTCTGTGTGGTCTGGTTTATCAGGGTTTGAAGCGTTTTCATGTTTCCCTATTTGTCATGTATCGTCGTTACTTGC
GAAAGATAGACCTGAGAGAGGGTTTCCGTGGAGTCATTGGACACTTGGCTGCCTTCTTCTTGACGGTGGGTCTGGGATTGAGATCTGGATTCTGAAACATATATTGGgtaagcaattcaatcacatacattatgaaaccttgcatttatttaactttgttgttctcaatattaagtttcttcgttgtgaagTAAAGCAGC
ATGGACGCTTGAAGCGCTGGATGGACGTAATGAAGCACAGGCTGGGCAGGTCTGTATATGGGCAAGCAGGTGTCTCGTTTGGCTGGGCTAGGCTTGGTAAGTTAGATGGGAGGGCAGGTCTGTATTTGGGCTGGCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGCTGGGCTTGGTAAGTTAGATGAGAGGGCAGGTCTGT
ATTTGGGCTCTCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGTTGGGCTTGGTAAGTTAGATGGGAGGGCAATTACAGATGATTCATGAAGCACTAAAACTGGAA




Intron 6 GTAATTTTCA ... GTTGGATCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A166.6713426
A252.1722624
A356.2514118
A462.1614223
A556.25709
A658.6869598
A761.4836132
A856.8257775
A960.7510412161
A1057.89964132



>TRINITY_DN45436_c0_g4_i5 from sample A7 / Example spliced isoform
CTCTCGACGCTTGATAGAGCCTAGGATTTGGATCTAGGCGAGGAGAAGTTTACACCTCGGGAGATTTGATCCCTCTCGACGCTTGATAGAGCCTAGGATTTGGATCTAGGCGAGGAGAAGTTTACACCTCGGGAGATTTGATCCCTCTCGACGCTTGATAGAGCCTACGATTTCGATCTAGGCTGTTGGAGCATGAAACA
CTGAAGGCGCTCCTGCGATCATTGCATTATCGAGAGGGAGATTTTTAGAGCTTCCGGCACGGACTTGTGATGGCGCTGGGGTTGATCACGGGTTTAGCAAGAGCCATGCGTAAGAAGCGCAGCTCATCTCTGGATATTCTTACATCCAAGAAGGGCCCTCGTGACTATTACAAGGGAAAGAACTGCAAATCCACTGGTTT
TCACACTAGAAAAGGTGGCTATGTGCTGATGGATGAAAAATTGCCATGTTATGTTGTTCCTGATTTGACTGGATTCAAGTTAAAACCTTACGTGGCACATACCGTGTCGACTAAAGCTGCAGACAATCTCAATTCTAAATCTGAGACTTCAGAGCCTGCAAGACCTAGTGAATAGTTTTTTGACATCTCATATTAGAGTG
TACTACAATGACAGACTTTTGCTGTAGTTTATTCAAAACTTTGAAAGGTTTTTGAATTGAAACTAATTCAATTTCACACAGAATATGCAGATTGCTGTATTTATTTGTTACTATCACTTGCATTTACATGTGGAAAGTAGCACTTGTTTTTTATTCCGAAGGTTTCAAACGAGCAAGGAAGAAATGTTCATGCTGTGAAG
TAATGAATTCTATTGTGGAATTCCTGGGTAAATAAGATTTGTAACGTGCATAGCTTATTTGAATGATGATCAATAAACAGATAGAACTTCTGTTTGACTCTGGATATTGTAATATGCTTGCCGACAATTATGGCATGATTTGGTAATTCGTAGACCAGTGACGTGTTTCTCTGAAGCATAACGCATTATCTTTACAAGAT
TCAGCTCTCAAGTCAGTAGTAGTATGTTGAAACTTGGAGTAGATTAGGCATCCTAGAGATTACAAACATGTAAGAATCATGGTAGCATTTTTCTTAGCATTTACCATTGAGCCTTATTTTATAGTTAATAGTGTGGGATTAACGTCCAACAATGGGCCATTTTATTAGATTCATTCCCATTTATCTTTTTGAAGCCTATT
CTTGACTACCTTGGTCACAAGTATTCAGGCAATGCAAAATTATGCTATTATCAGTCGGGCTTTTAACTGCCAAAGGTTTAATCACAACATGTATATAATACTTATCTGTGCACTCATATAGTTTGATTATGTACTTGTGCAACTTCGGAAGCTATTCTTATATTATTATTGTACCTCCTACGGGAGAAGATATTGATGTA
ACTGATCATGTAAAACCCTTGAAAGAATCAATGTAAACCTTGGGGTGAAAATACACAAAGAAA


>TRINITY_DN45436_c0_g4_i7 from sample A7 / Example unspliced isoform:
CTCTCGACGCTTGATAGAGCCTAGGATTTGGATCTAGGCGAGGAGAAGTTTACACCTCGGGAGATTTGATCCCTCTCGACGCTTGATAGAGCCTAGGATTTGGATCTAGGCGAGGAGAAGTTTACACCTCGGGAGATTTGATCCCTCTCGACGCTTGATAGAGCCTACGATTTCGATCTAGGCTGgtaattttcataact
gatccattacaaatatatttgctctaggcgggtataaaattttaccgagagacgtcgtaatatatgccatatcttgcgttggatcag
TTGGAGCATGAAACACTGAAGGCGCTCCTGCGATCATTGCATTATCGAGAGGGAGATTTTTAGAGCTTCCGGCACGGACTTGTGATGGCGCTGGGGTTGATCACGGGTTTAGC
AAGAGCCATGCGTAAGAAGCGCAGCTCATCTCTGGATATTCTTACATCCAAGAAGGGCCCTCGTGACTATTACAAGGGAAAGAACTGCAAATCCACTGGTTTTCACACTAGAAAAGGTGGCTATGTGCTGATGGATGAAAAATTGCCATGTTATGTTGTTCCTGATTTGACTGGATTCAAGTTAAAACCTTACGTGGCAC
ATACCGTGTCGACTAAAGCTGCAGACAATCTCAATTCTAAATCTGAGACTTCAGAGCCTGCAAGACCTAGTGAATAGTTTTTTGACATCTCATATTAGAGTGTACTACAATGACAGACTTTTGCTGTAGTTTATTCAAAACTTTGAAAGGTTTTTGAATTGAAACTAATTCAATTTCACACAGAATATGCAGATTGCTGT
ATTTATTTGTTACTATCACTTGCATTTACATGTGGAAAGTAGCACTTGTTTTTTATTCCGAAGGTTTCAAACGAGCAAGGAAGAAATGTTCATGCTGTGAAGTAATGAATTCTATTGTGGAATTCCTGGGTAAATAAGATTTGTAACGTGCATAGCTTATTTGAATGATGATCAATAAACAGATAGAACTTCTGTTTGAC
TCTGGATATTGTAATATGCTTGCCGACAATTATGGCATGATTTGGTAATTCGTAGACCAGTGACGTGTTTCTCTGAAGCATAACGCATTATCTTTACAAGATTCAGCTCTCAAGTCAGTAGTAGTATGTTGAAACTTGGAGTAGATTAGGCATCCTAGAGATTACAAACATGTAAGAATCATGGTAGCATTTTTCTTAGC
ATTTACCATTGAGCCTTATTTTATAGTTAATAGTGTGGGATTAACGTCCAACAATGGGCCATTTTATTAGATTCATTCCCATTTATCTTTTTGAAGCCTATTCTTGACTACCTTGGTCACAAGTATTCAGGCAATGCAAAATTATGCTATTATCAGTCGGGCTTTTAACTGCCAAAGGTTTAATCACAACATGTATATAA
TACTTATCTGTGCACTCATATAGTTTGATTATGTACTTGTGCAACTTCGGAAGCTATTCTTATATTATTATTGTACCTCCTACGGGAGAAGATATTGATGTAACTGATCATGTAAAACCCTTGAAAGAATCAATGTAAACCTTGGGGTGAAAATACACAAAGAAA




Intron 7 GTAAGCAATT ... TGAAGTAAAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A145.45682
A264.71365
A358.49111813
A420822
A560466
A650.8814272
A75027477
A861.45163813
A943.6620229
A1039.78282314



>TRINITY_DN42223_c2_g1_i4 from sample A9 / Example spliced isoform
ATAGACCTGAGAGAGGGTTTCCGTGGAGTCATTGGACACTTGGCTGCCTTCTTCTTGACGGTGGGTCTGGGATTGAGATCTGGATTCTGAAACATATATTGGCAGCATGGACGCTTGAAGCGCTGGATGGACGTAATGAAGCACAGGCTGGGCAGGTCTGTATATGGGCAAGCAGGTGTCTCGTTTGGCTGGGCTAGGCT
TGGTAAGTTAGATGGGAGGGCAGGTCTGTATTTGGGCTGGCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGCTGGGCTTGGTAAGTTAGATGAGAGGGCAGGTCTGTATTTGGGCTCTCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGTTGGGCTTGGTAAGTTAGATGGGAGG


>TRINITY_DN42223_c2_g1_i11 from sample A9 / Example unspliced isoform:
GAGGATTTTACATTTTCTAGGAAGGATTTTATATTTCTGTACTGATTCCTTTAAAGCCGTTGGATGGTCATGAAGGCTGTGCAATCTCTCCGTTCATTTCTATGCTCTATCCTTGCTTCATGAGGCTCTGTGTGGTCTGGTTTATCAGGGTTTGAAGCGTTTTCATGTTTCCCTATTTGTCATGTATCGTCGTTACTTGC
GAAAGATAGACCTGAGAGAGGGTTTCCGTGGAGTCATTGGACACTTGGCTGCCTTCTTCTTGACGGTGGGTCTGGGATTGAGATCTGGATTCTGAAACATATATTGGgtaagcaattcaatcacatacattatgaaaccttgcatttatttaactttgttgttctcaatattaagtttcttcgttgtgaagtaaagCAGC
AT
GGACGCTTGAAGCGCTGGATGGACGTAATGAAGCACAGGCTGGGCAGGTCTGTATATGGGCAAGCAGGTGTCTCGTTTGGCTGGGCTAGGCTTGGTAAGTTAGATGGGAGGGCAGGTCTGTATTTGGGCTGGCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGCTGGGCTTGGTAAGTTAGATGAGAGGGCAGGTCTGT
ATTTGGGCTCTCTGGGCAGGCAGGTGTCTCGTTTGGCTGGGTTGGGCTTGGTAAGTTAGATGGGAGGGCAATTACAGATGATTCATGAAGCACTAAAACTGGAA




Intron 8 GTAAATCGTC ... TAGACCCCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A182.8631910
A279.175317
A3766299
A473.3362013
A565.857261
A653.337214
A755.2617240
A882.612118
A967.358429
A1070.1510938



>TRINITY_DN43484_c0_g1_i2 from sample A10 / Example spliced isoform
ATCGATTTCGACATTCAATTCTGGAGGAATTTTTCCTTTGACAAATCCTGTTGCTATTAGCAGATCCATTATCATTTTCAATCGACGGCAATGGCAGGGAAATGTTTTGAGTAGTTGGTGATGGCGTCTTACTGCAAGTGGTCGGAGCTTCTCACAGCCTTGGGGCGTCTTACAGGTGTCCAGATAAAGAAAGCTGTATC
TATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGTTCTCCAAAGTCAAGCTTACCT
GTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAGATGCTACAGTCTTGGAGGTAG
CTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAAAGGATCACTTGGTTTTATAGT
CTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATCATGGTAATCTTCTGTTCTTAA
TTTCCATTTTACATTGAAG


>TRINITY_DN43484_c0_g1_i1 from sample A10 / Example unspliced isoform:
ATCGATTTCGACATTCAATTCTGGAGGAATTTTTCCTTTGACAAATCCTGTTGCTATTAGCAGATCCATTATCATTTTCAATCGACGGCAATGGCAGGGAAATGTTTTGAGTAGTTGGTGATGGCGTCTTACTGCAAGTGGTCGGAGCTTCTCACAGCCTTGGGGCGTCTTACAGgtaaatcgtcctccagccttggggt
ttacataagattggcacaatgagttttcatgatgtatggtgaatctcgtgtacaatgcatgctgtaggaactggagttgataaattgcaaaacaaccaatgcatgttagtaggaagtaagaatgaggattgaaaactgagagtaaaaaccaaaagaacggtgtcaagcggtaaatcaagtgatcttgtttacagagatcc
tcttcaatccccagcacacatgatgccctaattgggcatcatgtattatcctgtaatatctcaagttaattgagattaggagctgtcctaggcagtgctcgtgaagaaaggtaaggtgcaattcctggatgattaaatatctttagttcgtggcatcggagatagagctcatttacaaaaaaattcaaaatgaagaggga
ttcattatctgctgtagagaatcctataaccacaactgaaatcagtgaaaaaccaggagaatggaaagggaagccttgcaagcatttagcaaaaggcatcgacatagagaagcttgcagctcagattgcacgagtttcgcttttgcagtgtcagggatgtgtgcagatcaccaagggcagtagaagctcgaaggacaaga
aggaaaagtcatggaaacaatccaagaagaaaacagctccagcttcagatttgtgtactgatgggtggccaaggacgtgggtgtgtctggcctgtggtcttgtgggttgtggaagtatttctatttccagcccttcgtcagacgaaggtggtggaggaatggaagagagcataggcactggtcatgcttggaaacactgg
ctttgtgagttccatccctatgtgttgcagtgtggccacaagctttcttgctggtgttttccttgtagatcctatctggaatttcgttttatcaagcagtctgctgatgcagagcaggacaagcatggattggtgatggtgggtccttcggcaagttcattgatgttgcaggccttgaaggttgtccaggagaagctcat
caaggaatctgcaaagtttgagcagattcggcttgttgatgctgttgttgagaagtggccagataaggaggaagtcaaggaagcggcagttgtagaggtccaagaggatgcagttagtaggaggtgcgtggtcaagggtctagtaaatctgggaaacacttgctttttcaatgcagttttgcagaatttgtttgccataa
atgtgctgaaggatcattttgctaaaccagcgcaagttacagaagggcatctgactgcctgtttgagaaaattgtatctcgaaatggcatttgaggggcaagcagccaaggatgtagggcaaggggacacaagtgctcatttcaaaaagaatggaaaggggagggcattacaaaatagcagtaatggagtgatagatcct
agaacactttttactgctatttgtgataaggttccacgcttcagaggatatcggcaacaggacagccatgagttgttgcggttcttacttgactgcctacatatggaggaattgaatacaaggaaacctcaaagtagaagttctgagattttatctgaaaatggggttgatagtatgcaaaagcagatagatatggatgc
aaaccagaagaataattcatgtgaatttctgaccatggtagaaagtgtattctgcagtgaattatctagcactatatgctgctgtgagtgtggatattcttcagtagtatttgagtcatatctcgatctgtctttacctattccatcaaaacaagaacgacagaaaaatccattgtctcaattatatagtaattgggctt
cctcatcagggttgagaaagggatcaataaagacaaattcatacaaagatgataaaagtaggaaggaaggctggggaaagataaatgacagtttggattcatctataaataaatcagagataaacacagaggtgcctctgtgcacagaaaataggtcaagctcatttccagttggaaacattgcctctggagatgataca
ttaactccaaacatatctgatcttccagaagatttaggatggaaggggtatttggatacttcagcacaatctgcaaatgttgtgcataatgggactttgaatgaatcagaaataattgggactcctgactacaatagaatatctcaacgcatgtcagaaatggcatcgaccgtgagaatttctgattctaaatctgcttt
ccagaataaaggtcttataaatcaggaatctgcattttctcccacagaaacaccagggattctgaagaaacatgtgccgtctactgaaagggatttgggcgcttccaataggaagggtatggtgcccatgtcggacttgaaagctcataatgattttggacaacatgatgagcctcttccaataactggggactcagaag
ttctgccacatccttacaaggatctcaacgtggcagaggaagatattcaaacaactgaatgttttcacaagttatctgttgtaagcactgttgaaactttaggcaaactctccacaaatgaatctggatctgaaatagatcccaaggttcttgatggagagtttgatgggtttgcaaaaaggtttaatgaggaaggaact
tcctttgttcggaacataggatcagaagctggtgaatctgagagtgttcaactaaatgaagaatacggtggagatgatatatgggagacagatttagccattgacactttagaaggcaatggaacaaacaaggctaaacctgaagatattcttccaatatccattgatggttgtttggctgcttttacaaggccagagat
tctttggggtgaaaatgcatggcagtgtgaaagttgttcttctaggatttccaaggattctttcaatgtagaggcaaagccagagcaagataagaaagttcattataaaccaactgttatgtcagcaaggtatagtggaggtacatacaaggagcagatgcatttagtagctggcaggggaaatattgagggagtgatga
acagaaactttagtaatatgcccgagaaacagatgataaattcaggagattcaactactttaaggtatgatagaatactggattcattaaggaatgatggaatactggattttgaaggggatatctataaacagcttcattcatcatattgcaataaaagactgatgtctaatttgaattctcatacccaggagctcaca
aaaaaggaaggtaaaatgcttcagtatgctggtaggtccaatgatttggacgttagccatacaaacaatcaaagaagttatatttttccctgtagaagcattggcataggtaactcatgtgacaataattcaaatgaattttctggtcatggggattttcctgttaaaacaggaaggatttttgatgtgaaaaatccact
agttaccaaggctgagacatgtccagaaaatgacaaatcagtcgtcgcacatatagacccttctatctgtagcaaaatgtcaaaggccaaacaaacttgtgcagtcttgggtagagacgtatttgattccaaagattctgtcctcaagattgatgaacttcaaaatgaagctttgagatcatcttggggaaaagcaagac
tgaagggaagtaaatctaaggaaaagaaaaatgggctaaagggattaaagcgcaatgcaactaaagtacttcttatcagcaaggcgccacgtattctaactattcatttaaagaggttcacccatggccttatcaaattgaacagtcatgttacttttcaagataagcttgacctgaggccgtttctagaccccag
GTGT
CC
AGATAAAGAAAGCTGTATCTATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGT
TCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAG
ATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAA
AGGATCACTTGGTTTTATAGTCTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATC
ATGGTAATCTTCTGTTCTTAATTTCCATTTTACATTGAAG




Intron 9 GTATGATAGA ... TCATACCCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A173.91123731
A279.4172727
A369.62123025
A489.2932624
A576.7451914
A683.332137
A785.1984943
A884.9142223
A979.3193336
A1076.19155739



>TRINITY_DN45436_c0_g4_i6 from sample A7 / Example spliced isoform
AAGGTAAGGTGCAATTCCTGGATGATTAAATATCTTTAGTTCGTGGCATCGGAGATAGAGCTCATTTACAAAAAAATTCAAAATGAAGAGGGATTCATTATCTGCTGTAGAGAATCCTATAACCACAACTGAAATCAGTGAAAAACCAGGAGAATGGAAAGGGAAGCCTTGCAAGCATTTAGCAAAAGGCATCGACATAG
AGAAGCTTGCAGCTCAGATTGCACGAGTTTCGCTTTTGCAGTGTCAGGGATGTGTGCAGATCACCAAGGGCAGTAGAAGCTCGAAGGACAAGAAGGAAAAGTCATGGAAACAATCCAAGAAGAAAACAGCTCCAGCTTCAGATTTGTGTACTGATGGGTGGCCAAGGACGTGGGTGTGTCTGGCCTGTGGTCTTGTGGGT
TGTGGAAGTATTTCTATTTCCAGCCCTTCGTCAGACGAAGGTGGTGGAGGAATGGAAGAGAGCATAGGCACTGGTCATGCTTGGAAACACTGGCTTTGTGAGTTCCATCCCTATGTGTTGCAGTGTGGCCACAAGCTTTCTTGCTGGTGTTTTCCTTGTAGATCCTATCTGGAATTTCGTTTTATCAAGCAGTCTGCTGA
TGCAGAGCAGGACAAGCATGGATTGGTGATGGTGGGTCCTTCGGCAAGTTCATTGATGTTGCAGGCCTTGAAGGTTGTCCAGGAGAAGCTCATCAAGGAATCTGCAAAGTTTGAGCAGATTCGGCTTGTTGATGCTGTTGTTGAGAAGTGGCCAGATAAGGAGGAAGTCAAGGAAGCGGCAGTTGTAGAGGTCCAAGAGG
ATGCAGTTAGTAGGAGGTGCGTGGTCAAGGGTCTAGTAAATCTGGGAAACACTTGCTTTTTCAATGCAGTTTTGCAGAATTTGTTTGCCATAAATGTGCTGAAGGATCATTTTGCTAAACCAGCGCAAGTTACAGAAGGGCATCTGACTGCCTGTTTGAGAAAATTGTATCTCGAAATGGCATTTGAGGGGCAAGCAGCC
AAGGATGTAGGGCAAGGGGACACAAGTGCTCATTTCAAAAAGAATGGAAAGGGGAGGGCATTACAAAATAGCAGTAATGGAGTGATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGACAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATGGA
GGAATTGAATACAAGGAAACCTCAAAGTAGAAGTTCTGAGATTTTATCTGAAAATGGGGTTGATAGTATGCAAAAGCAGATAGATATGGATGCAAACCAGAAGAATAATTCATGTGAATTTCTGACCATGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGATATTCTTCAGTAG
TATTTGAGTCATATCTCGATCTGTCTTTACCTATTCCATCAAAACAAGAACGACAGAAAAATCCATTGTCTCAATTATATAGTAATTGGGCTTCCTCATCAGGGTTGAGAAAGGGATCAATAAAGACAAATTCATACAAAGATGATAAAAGTAGGAAGGAAGGCTGGGGAAAGATAAATGACAGTTTGGATTCATCTATA
AATAAATCAGAGATAAACACAGAGGTGCCTCTGTGCACAGAAAATAGGTCAAGCTCATTTCCAGTTGGAAACATTGCCTCTGGAGATGATACATTAACTCCAAACATATCTGATCTTCCAGAAGATTTAGGATGGAAGGGGTATTTGGATACTTCAGCACAATCTGCAAATGTTGTGCATAATGGGACTTTGAATGAATC
AGAAATAATTGGGACTCCTGACTACAATAGAATATCTCAACGCATGTCAGAAATGGCATCGACCGTGAGAATTTCTGATTCTAAATCTGCTTTCCAGAATAAAGGTCTTATAAATCAGGAATCTGCATTTTCTCCCACAGAAACACCAGGGATTCTGAAGAAACATGTGCCGTCTACTGAAAGGGATTTGGGCGCTTCCA
ATAGGAAGGGTATGGTGCCCATGTCGGACTTGAAAGCTCATAATGATTTTGGACAACATGATGAGCCTCTTCCAATAACTGGGGACTCAGAAGTTCTGCCACATCCTTACAAGGATCTCAACGTGGCAGAGGAAGATATTCAAACAACTGAATGTTTTCACAAGTTATCTGTTGTAAGCACTGTTGAAACTTTAGGCAAA
CTCTCCACAAATGAATCTGGATCTGAAATAGATCCCAAGGTTCTTGATGGAGAGTTTGATGGGTTTGCAAAAAGGTTTAATGAGGAAGGAACTTCCTTTGTTCGGAACATAGGATCAGAAGCTGGTGAATCTGAGAGTGTTCAACTAAATGAAGAATACGGTGGAGATGATATATGGGAGACAGATTTAGCCATTGACAC
TTTAGAAGGCAATGGAACAAACAAGGCTAAACCTGAAGATATTCTTCCAATATCCATTGATGGTTGTTTGGCTGCTTTTACAAGGCCAGAGATTCTTTGGGGTGAAAATGCATGGCAGTGTGAAAGTTGTTCTTCTAGGATTTCCAAGGATTCTTTCAATGTAGAGGCAAAGCCAGAGCAAGATAAGAAAGTTCATTATA
AACCAACTGTTATGTCAGCAAGGTATAGTGGAGGTACATACAAGGAGCAGATGCATTTAGTAGCTGGCAGGGGAAATATTGAGGGAGTGATGAACAGAAACTTTAGTAATATGCCCGAGAAACAGATGATAAATTCAGGAGATTCAACTACTTTAAGGAGCTCACAAAAAAGGAAGGTAAAATGCTTCAGTATGCTGGTA
GGTCCAATGATTTGGACGTTAGCCATACAAACAATCAAAGAAGTTATATTTTTCCCTGTAGAAGCATTGGCATAGGTAACTCATGTGACAATAATTCAAATGAATTTTCTGGTCATGGGGATTTTCCTGTTAAAACAGGAAGGATTTTTGATGTGAAAAATCCACTAGTTACCAAGGCTGAGACATGTCCAGAAAATGAC
AAATCAGTCGTCGCACATATAGACCCTTCTATCTGTAGCAAAATGTCAAAGGCCAAACAAACTTGTGCAGTCTTGGGTAGAGACGTATTTGATTCCAAAGATTCTGTCCTCAAGATTGATGAACTTCAAAATGAAGCTTTGAGATCATCTTGGGGAAAAGCAAGACTGAAGGGAAGTAAATCTAAGGAAAAGAAAAATGG
GCTAAAGGGATTAAAGCGCAATGCAACTAAAGTACTTCTTATCAGCAAGGCGCCACGTATTCTAACTATTCATTTAAAGAGGTTCACCCATGGCCTTATCAAATTGAACAGTCATGTTACTTTTCAAGATAAGCTTGACCTGAGGCCGTTTCTAGACCCCAGGTGTCCAGATAAAGAAAGCTGTATCTATCGTCTAATAG
GAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGATTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGTTCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAG
AAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATTGCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAGATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTG
AAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACCTATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAAAGGATCACTTGGTTTTATAGTCTTGTAAAGGTTT
GAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTGACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATCATGGTAATCTTCTGTTCTTAATTTCCATTTTACA
TTGAAGGGCACTGTGCAAGTCCAATGGCTTTATTAGTAATGCAGGATGCATTTGAACTTAGACATGAATATGTGGATAATTAGAATTTCAAAGGTTAGAG


>TRINITY_DN45436_c0_g4_i2 from sample A7 / Example unspliced isoform:
AAGGTAAGGTGCAATTCCTGGATGATTAAATATCTTTAGTTCGTGGCATCGGAGATAGAGCTCATTTACAAAAAAATTCAAAATGAAGAGGGATTCATTATCTGCTGTAGAGAATCCTATAACCACAACTGAAATCAGTGAAAAACCAGGAGAATGGAAAGGGAAGCCTTGCAAGCATTTAGCAAAAGGCATCGACATAG
AGAAGCTTGCAGCTCAGATTGCACGAGTTTCGCTTTTGCAGTGTCAGGGATGTGTGCAGATCACCAAGGGCAGTAGAAGCTCGAAGGACAAGAAGGAAAAGTCATGGAAACAATCCAAGAAGAAAACAGCTCCAGCTTCAGATTTGTGTACTGATGGGTGGCCAAGGACGTGGGTGTGTCTGGCCTGTGGTCTTGTGGGT
TGTGGAAGTATTTCTATTTCCAGCCCTTCGTCAGACGAAGGTGGTGGAGGAATGGAAGAGAGCATAGGCACTGGTCATGCTTGGAAACACTGGCTTTGTGAGTTCCATCCCTATGTGTTGCAGTGTGGCCACAAGCTTTCTTGCTGGTGTTTTCCTTGTAGATCCTATCTGGAATTTCGTTTTATCAAGCAGTCTGCTGA
TGCAGAGCAGGACAAGCATGGATTGGTGATGGTGGGTCCTTCGGCAAGTTCATTGATGTTGCAGGCCTTGAAGGTTGTCCAGGAGAAGCTCATCAAGGAATCTGCAAAGTTTGAGCAGATTCGGCTTGTTGATGCTGTTGTTGAGAAGTGGCCAGATAAGGAGGAAGTCAAGGAAGCGGCAGTTGTAGAGGTCCAAGAGG
ATGCAGTTAGTAGGAGGTGCGTGGTCAAGGGTCTAGTAAATCTGGGAAACACTTGCTTTTTCAATGCAGTTTTGCAGAATTTGTTTGCCATAAATGTGCTGAAGGATCATTTTGCTAAACCAGCGCAAGTTACAGAAGGGCATCTGACTGCCTGTTTGAGAAAATTGTATCTCGAAATGGCATTTGAGGGGCAAGCAGCC
AAGGATGTAGGGCAAGGGGACACAAGTGCTCATTTCAAAAAGAATGGAAAGGGGAGGGCATTACAAAATAGCAGTAATGGAGTGATAGATCCTAGAACACTTTTTACTGCTATTTGTGATAAGGTTCCACGCTTCAGAGGATATCGGCAACAGGACAGCCATGAGTTGTTGCGGTTCTTACTTGACTGCCTACATATGGA
GGAATTGAATACAAGGAAACCTCAAAGTAGAAGTTCTGAGATTTTATCTGAAAATGGGGTTGATAGTATGCAAAAGCAGATAGATATGGATGCAAACCAGAAGAATAATTCATGTGAATTTCTGACCATGGTAGAAAGTGTATTCTGCAGTGAATTATCTAGCACTATATGCTGCTGTGAGTGTGGATATTCTTCAGTAG
TATTTGAGTCATATCTCGATCTGTCTTTACCTATTCCATCAAAACAAGAACGACAGAAAAATCCATTGTCTCAATTATATAGTAATTGGGCTTCCTCATCAGGGTTGAGAAAGGGATCAATAAAGACAAATTCATACAAAGATGATAAAAGTAGGAAGGAAGGCTGGGGAAAGATAAATGACAGTTTGGATTCATCTATA
AATAAATCAGAGATAAACACAGAGGTGCCTCTGTGCACAGAAAATAGGTCAAGCTCATTTCCAGTTGGAAACATTGCCTCTGGAGATGATACATTAACTCCAAACATATCTGATCTTCCAGAAGATTTAGGATGGAAGGGGTATTTGGATACTTCAGCACAATCTGCAAATGTTGTGCATAATGGGACTTTGAATGAATC
AGAAATAATTGGGACTCCTGACTACAATAGAATATCTCAACGCATGTCAGAAATGGCATCGACCGTGAGAATTTCTGATTCTAAATCTGCTTTCCAGAATAAAGGTCTTATAAATCAGGAATCTGCATTTTCTCCCACAGAAACACCAGGGATTCTGAAGAAACATGTGCCGTCTACTGAAAGGGATTTGGGCGCTTCCA
ATAGGAAGGGTATGGTGCCCATGTCGGACTTGAAAGCTCATAATGATTTTGGACAACATGATGAGCCTCTTCCAATAACTGGGGACTCAGAAGTTCTGCCACATCCTTACAAGGATCTCAACGTGGCAGAGGAAGATATTCAAACAACTGAATGTTTTCACAAGTTATCTGTTGTAAGCACTGTTGAAACTTTAGGCAAA
CTCTCCACAAATGAATCTGGATCTGAAATAGATCCCAAGGTTCTTGATGGAGAGTTTGATGGGTTTGCAAAAAGGTTTAATGAGGAAGGAACTTCCTTTGTTCGGAACATAGGATCAGAAGCTGGTGAATCTGAGAGTGTTCAACTAAATGAAGAATACGGTGGAGATGATATATGGGAGACAGATTTAGCCATTGACAC
TTTAGAAGGCAATGGAACAAACAAGGCTAAACCTGAAGATATTCTTCCAATATCCATTGATGGTTGTTTGGCTGCTTTTACAAGGCCAGAGATTCTTTGGGGTGAAAATGCATGGCAGTGTGAAAGTTGTTCTTCTAGGATTTCCAAGGATTCTTTCAATGTAGAGGCAAAGCCAGAGCAAGATAAGAAAGTTCATTATA
AACCAACTGTTATGTCAGCAAGGTATAGTGGAGGTACATACAAGGAGCAGATGCATTTAGTAGCTGGCAGGGGAAATATTGAGGGAGTGATGAACAGAAACTTTAGTAATATGCCCGAGAAACAGATGATAAATTCAGGAGATTCAACTACTTTAAGgtatgatagaatactggattcattaaggaatgatggaatactg
gattttgaaggggatatctataaacagcttcattcatcatattgcaataaaagactgatgtctaatttgaattctcatacccag
GAGCTCACAAAAAAGGAAGGTAAAATGCTTCAGTATGCTGGTAGGTCCAATGATTTGGACGTTAGCCATACAAACAATCAAAGAAGTTATATTTTTCCCTGTAGAAGCATTGGCAT
AGGTAACTCATGTGACAATAATTCAAATGAATTTTCTGGTCATGGGGATTTTCCTGTTAAAACAGGAAGGATTTTTGATGTGAAAAATCCACTAGTTACCAAGGCTGAGACATGTCCAGAAAATGACAAATCAGTCGTCGCACATATAGACCCTTCTATCTGTAGCAAAATGTCAAAGGCCAAACAAACTTGTGCAGTCT
TGGGTAGAGACGTATTTGATTCCAAAGATTCTGTCCTCAAGATTGATGAACTTCAAAATGAAGCTTTGAGATCATCTTGGGGAAAAGCAAGACTGAAGGGAAGTAAATCTAAGGAAAAGAAAAATGGGCTAAAGGGATTAAAGCGCAATGCAACTAAAGTACTTCTTATCAGCAAGGCGCCACGTATTCTAACTATTCAT
TTAAAGAGGTTCACCCATGGCCTTATCAAATTGAACAGTCATGTTACTTTTCAAGATAAGCTTGACCTGAGGCCGTTTCTAGACCCCAGGTGTCCAGATAAAGAAAGCTGTATCTATCGTCTAATAGGAATTGTTGAACACTCCGGTACAATGAGAAGTGGTCATTATGTTTCTTACATCAGGGGTCCAGAAGCTGAAGA
TTGCCAAAAGGCTGAAAATGATGGCCTTTGTGCTGAAAGCACTTGGTATCGCATCAGTGACACATTTGTGCGTAAATTATCCCTTTCAGAGGTTCTCCAAAGTCAAGCTTACCTGTTGTTTTATGAGAAATGTGCATTTTAGGGCTGCGTTAACCTTAAGCAACTGACTTCATAATCTGCATCTGGTGATTTCGGTAATT
GCTTTTTTTAAGCAAATTGATCCATTTCAAGAGAGAAACTGTACTTGGTATGTCACTTTGAACTGGACATCTTGTTAGTCTCTGCAGCCAAAGATGCTACAGTCTTGGAGGTAGCTTGGTGGTCCTGAAAAGACATCAGTGGACCAACTTCTTATGGGATCATGAATACGGCAATGTTTTTTCTGTTGGAAAATAAAACC
TATGCACAGGAAATTTTTCACCCATTGCCTCATGTACACATTTTGTTGTGTATGTGAAGAAATAAATCCATCATCTATATGCTTTTGCATAAAAGGATCACTTGGTTTTATAGTCTTGTAAAGGTTTGAGATTATTAGATCAAACTTCACAAGTTCTGTGAAAATACCCTAATCAACCTATCTCCCCTACATCACATGTG
ACCAAGAGCATTGAAAGAGAATTATTTGACATAGCTATCTGCAAGCTGGGGTTATTAATCAAAAGAGAGCTAAGATCAAATGGATACAGCATCATGGTAATCTTCTGTTCTTAATTTCCATTTTACATTGAAGGGCACTGTGCAAGTCCAATGGCTTTATTAGTAATGCAGGATGCATTTGAACTTAGACATGAATATGT
GGATAATTAGAATTTCAAAGGTTAGAG