sp|Q9M3H5|HMA1_ARATH ----> Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic
Intron 1 GTACTCTTCA ... ATTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.99 | 121 | 47 | 38 |
| A2 | 25.55 | 51 | 19 | 16 |
| A3 | 27.27 | 100 | 35 | 40 |
| A4 | 29.29 | 70 | 28 | 30 |
| A5 | 22.11 | 37 | 6 | 15 |
| A6 | 26.47 | 25 | 9 | 9 |
| A7 | 27.88 | 75 | 26 | 32 |
| A8 | 30 | 28 | 9 | 15 |
| A9 | 27.01 | 50 | 21 | 16 |
| A10 | 26.19 | 62 | 18 | 26 |
>TRINITY_DN119005_c2_g1_i5 from sample A2 / Example spliced isoformAATTCATGCTTGTGAAGAGAGAGGAACGTAATTTTATGAAATGGAATAAAAGTGAAAAATTAGAACGAGCTCGGTTTGTGGAGGGGGGACGACAAACCCTGCTCCCTTGTTCTCATCCTTGATTGGCGTGGCGATTATTTGTTTGTGATCAATCTTTGAACGGCTTGTCACCTTCGGCATTCCATGCGATTCGAAACTTC
AGATCACCGCACCTTTTGACAAATTTGGGGCAGATACAGATGCAGATGCAGGCTCTCTCTGACAAATTTGGCGGAGATTGAATCCATCACTTACGCACGAATTTGGTAGGTGTTCATTCTCTTTCGATGTCGCCGATTTAGTCAGTTTTTCGGAGGAATTTGGTGAACATGCGCTGTTCTTCGACGAATTTGGCAAAGGT
TAGTGCTTTCTTCCGCGCATGTTCTTGCAGATTTGGTCCTGTCGTCAAATTTGTCCGAAACAAGGATATTTTTTCATGCAGTTAGCGGGGATTGAGTCTTTCCTGGCAGGATTTGGCCTAGTCTACTGTAGAAGAATTCTATCGGCATTGAGTCGTATGTAGGTGACGTCTCCGGAGAAATTGGCCCGGATTAAGGCCTT
GCTTTATATGATTTGTTGTACACAGTATATCTCAAAATTGGCGTAGATTAGAGGAAAATGGTGGTTAAATCAGACGATTCGAGGAAGAAGATTTAAGAAATCGAGGAATCACCAGATCAGTCAGCGTTTCGTCTTAAGTCCAATTACTAAAATCGTGTGTCAACGAATTTGGCTCGAATGTCCAGGGTTTGAATCTAGGG
TTAGACAGTTAGCTTGACGCGATGCCGAAGATTTTACAGGGAATCAGGAAAATTTCAGAGTAGGGTTGCTGTATAGATGGACATGGTGGGAGTGGATAGAGAAGGGGGCAGCATTACCGTTGTCCAAGAAGCCGCCGCTCATTTGGATCCTTTCGTCAAAGAGGCTTGAAAGGGGGAGGAGAGAACAAAATAGTTCTATC
ATGGTGCGGCTTCTCGGATTAGCGAGGGCAGAATCAGATGATTTTCCCCGCGACATTACACGGAATGCGAACGGGACAGGAGATAACGGCTGGCTCATCCGGTTTTTTGATTCGGCATTTTTCTGCGAGTGGATTGCAGTTAGCTATTTGTACAAACATGAACATCCAGGAGTCAGAGACTATCTTTGCAACAGAATGTA
TACTTTGCCGCACTCCGGGATCGAGAGCTACCTCTTTCAGATTTGTTACATGCTCGTGCACAAGCCCAGCCCTTCGCTCGACAAGTTTGTTATCGACATGTGCACTAAGTCTCTTAGGATTGCACTTAAAGTACACTGGTTTCTTATGGCAGAGGCCGAGGATTCAGAGGATAATGAGGGGGTCAGCAGAATCCAGGAAA
AGTGTCAGATGGCTGCCACTTTGATGGGGGAGTGGCCACCCTTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGGAGCCGGAATCGTGTATTGAATAAGCTATTTTCTTCGAAGCAACGGCTTCTGTCTCTTACTTCGCCACCTCATAAATCTCAGCCACTCGCATCTCCTATTGCTGCTACAAATAGTAACACTCAG
GAGGAAAACAAAATCGTTGCAGATGAATCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGAGATGCACTGTTCAAAAAATTCATTGACAAGGAGGATGAAGAACTGGACAAAACAAAAGAATCATCAAAGGAGGCTGACCAGGAAAGCTTTTTTCGGAGGCTACTAAGGGACAACAAAGA
AGAGGATGAAAAAGTAGTTCGCGGCGAAGAACTGGCAAATTCTGAAGGATTCTTCAGGCGATTGTTTCGGGACAGAGGTGATGCAGAAGAAAAGGGTGGGGCCAAATCAGGGGAAGAAGATGAAAAAGATGGATTTTTCCGCAGGCTTTTCAGGGAGAAGAGCGAGGACCGTGAAAAGAGAGATGGGCAGGATAAAACCG
AGGATGATGACAAGGGCAATGGCAGCTGTGATGAGGATGAGGGTTCTGATTTCTTGTCGTTTCGGAGGTTATTCAGGATTCACCCCGAAGATGAGAAGACCTTGTCGACTTCCATGGAGAATTGTTCCTTAAGTACTCCTGAAAGCAGTCCTGGCACTGAGAATTTTTTCAAGAGATTATTTAGGGATCGTGATCGATCT
GTTGAAGATTCTGAATTATTTAGTCTAAAGCGGCAGAGGGAGAAACGGCCAGGATCTCCAAGGCAGCGGAGTGATAGGTCATCTGCTAAACCACCTTTGCCAATCACATCTCAAATTCGAAAAGGGACTTACCATGTGTCTTTGGATTTTGTTCAATCACTATGTGATACATCATATGGTTTGGTGGATGTGTACCCAAT
GGAAGATCGTAAAAATGCCTTGCGGGAGTCATTGGCTGAGCTCAATTCCAATCTGGCATCTTCCCAAAGTAGTGGAGGCATCTGCTTTCCAATGGGAAAAGGCTTGTATCGTGTGGTACATATACCAGAAGATGAAGCTGTTCTCTTAAATTCTAGAGAAAAGGCACCTTATCTGATTTGTGTTGAGGTTCTAAAAGGAG
AGAACCAAAGCTTAAATTCACAAAACAAGGATTCTTCGTCTCATAAACTTTCGAGAGGAGGAATTCCATTAGCAAATGGAGATGTGCAGTTGCAACGCCCACCTCCATGGGCATTTCCACTTTGGAATCAGCATGATGTGCAGCGGAATAGCACTGATCAGATGTTAAGATCTGCTTCCCAAGCCATTGATCAAGCGATG
GCACATTTATGGGAAGCCAAAGTAAAATTTGTGCATGTGAGCCTTTCTGTTGACCGTCGAAGTGTTGAGAGTTCTTCAGAAAATAATGAACCAGGAGTCATATCTGCAAAGATGGTGAATAATGATCTTCAGCAAGACAGTGAACAAACGACTTCTAACAGTTTATGGGTCAATGATGTGAAGACTGAAACAGAAGTTGG
AGACAGATTGGGGGATGCAGGCAGTACTCATCAGGCTGGTAATAGGGATCAGCTCACTGATGGAGAATGGATAAGTGTGACTTTGACTGCAGTTCCTGGTGTCAATATGGAAGATTTAGAAGACCAAGAACCCGCAAAAAGAAAAGAACACCGCCGCGTTCCAAGTACAATAGCAATGGCTGAAGTAAAGGCCGCCGCAG
CCAAAGGAGAGGCCCCAATAGGACTTCCTGTAAAAAAAGTTAGTCATGGTTCATCAAATACAAATTCCGAGGGTAATGATGGTGGCCAACCAAAGGCAACAGATCCATTAGCAGGGGAGCTATGGGAGGTGAAAAAGGAAAGGATCAGAAAGGCTTCTATCTATGGGAAATTGCCTGGTTGGGATCTCCGTTCTATTATT
GTGAAAAGTGGCGATGATTGCAGGCAGGAGCATCTTGCTGTGCAGCTTATTTCTCATTTCTATGATATTTTCCAAGAGGCAGGGCTACCACTTTGGTTGCGTCCTTATGAAGTTCTTGTTACTTCTTCATATACTGCTTTGATTGAAACAATTCCAGACACGGCATCGGTACATGCTATTAAAAGCAGGCATCCGAACAT
CGCAAGCTTGCGGGAGTTCTTTTCAGACAAATACAAGGAAAACTCACCTGCTTTCAAGCTTGCGCAGGTTATTTTTCTCATTTTCTCATTTTATCTTCTATTTCAGCAAAAAAACCTGCACTTTTATTACTCTCATTATAGGTTATGAATCTATGATGTTATTTCTCAGTCCTAATTTTGACATCTGAAATGAAAACCTG
ACATTAGAATTTATTTTTTATTTTTATGTAGGAATTTGATTTCTCTTTAATACTTTATTATTCAGGAATCAGAAATTTTAATTCAGAATTTGTTTATGTATGTTTCTATGAATGATGAATCCAAATCTTGAATATGGATTATGATTGTATGAATGATGAATCCAAATCTTGAATATGAATTGTGATGAAGTCAGAAACAA
TTTAATCTCAATTTTTTTCCCAAAGCTCTCATCTTTTTTTTTTCGACGTATAAGTTAAATATATATTTAAAAAAACATTGGGTTAGGGTGCC
>TRINITY_DN119005_c2_g1_i8 from sample A2 / Example unspliced isoform:AATTCATGCTTGTGAAGAGAGAGGAACGTAATTTTATGAAATGGAATAAAAGTGAAAAATTAGAACGAGCTCGGTTTGTGGAGGGGGGACGACAAACCCTGCTCCCTTGTTCTCATCCTTGATTGGCGTGGCGATTATTTGTTTGTGATCAATCTTTGAACGGCTTGTCACCTTCGGCATTCCATGCGATTCGAAACTTC
AGATCACCGCACCTTTTGACAAATTTGGGGCAGATACAGATGCAGATGCAGGCTCTCTCTGACAAATTTGGCGGAGATTGAATCCATCACTTACGCACGAATTTGGTAGGTGTTCATTCTCTTTCGATGTCGCCGATTTAGTCAGTTTTTCGGAGGAATTTGGTGAACATGCGCTGTTCTTCGACGAATTTGGCAAAGGT
TAGTGCTTTCTTCCGCGCATGTTCTTGCAGATTTGGTCCTGTCGTCAAATTTGTCCGAAACAAGGATATTTTTTCATGCAGTTAGCGGGGATTGAGTCTTTCCTGGCAGGATTTGGCCTAGTCTACTGTAGAAGAATTCTATCGGCATTGAGTCGTATGTAGGTGACGTCTCCGGAGAAATTGGCCCGGATTAAGGCCTT
GCTTTATATGATTTGTTGTACACAGTATATCTCAAAATTGGCGTAGATTAGAGGAAAATGGTGGTTAAATCAGACGATTCGAGGAAGAAGATTTAAGAAATCGAGGAATCACCAGATCAGTCAGCGTTTCGTCTTAAGTCCAATTACTAAAATCGTGTGTCAACGAATTTGGCTCGAATGTCCAGGGTTTGAATCTAGGG
TTAGACAGTTAGCTTGACGCGATGCCGAAGATTTTACAGGGAATCAGGAAAATTTCAGAGTAGGGTTGCTGTATAGATGGACATGGTGGGAGTGGATAGAGAAGGGGGCAGCATTACCGTTGTCCAAGAAGCCGCCGCTCATTTGGATCCTTTCGTCAAAGAGGCTTGAAAGGGGGAGGAGAGAACAAAATAGTTCTATC
ATGGTGCGGCTTCTCGGATTAGCGAGGGCAGAATCAGATGATTTTCCCCGCGACATTACACGGAATGCGAACGGGACAGGAGATAACGGCTGGCTCATCCGGTTTTTTGATTCGGCATTTTTCTGCGAGTGGATTGCAGTTAGCTATTTGTACAAACATGAACATCCAGGAGTCAGAGACTATCTTTGCAACAGAATGTA
TACTTTGCCGCACTCCGGGATCGAGAGCTACCTCTTTCAGATTTGTTACATGCTCGTGCACAAGCCCAGCCCTTCGCTCGACAAGTTTGTTATCGACATGTGCACTAAGTCTCTTAGGATTGCACTTAAAGTACACTGGTTTCTTATGGCAGAGGCCGAGGATTCAGAGGATAATGAGGGGGTCAGCAGAATCCAGGAAA
AGTGTCAGATGGCTGCCACTTTGATGGGGGAGTGGCCACCCTTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGGAGCCGGAATCGTGTATTGAATAAGCTATTTTCTTCGAAGCAACGGCTTCTGTCTCTTACTTCGCCACCTCATAAATCTCAGCCACTCGCATCTCCTATTGCTGCTACAAATAGTAACACTCAG
GAGGAAAACAAAATCGTTGCAGATGAATCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGAGATGCACTGTTCAAAAAATTCATTGACAAGGAGGATGAAGAACTGGACAAAACAAAAGAATCATCAAAGGAGGCTGACCAGGAAAGCTTTTTTCGGAGGCTACTAAGGGACAACAAAGA
AGAGGATGAAAAAGTAGTTCGCGGCGAAGAACTGGCAAATTCTGAAGGATTCTTCAGGCGATTGTTTCGGGACAGAGGTGATGCAGAAGAAAAGGGTGGGGCCAAATCAGGGGAAGAAGATGAAAAAGATGGATTTTTCCGCAGGCTTTTCAGGGAGAAGAGCGAGGACCGTGAAAAGAGAGATGGGCAGGATAAAACCG
AGGATGATGACAAGGGCAATGGCAGCTGTGATGAGGATGAGGGTTCTGATTTCTTGTCGTTTCGGAGGTTATTCAGGATTCACCCCGAAGATGAGAAGACCTTGTCGACTTCCATGGAGAATTGTTCCTTAAGTACTCCTGAAAGCAGTCCTGGCACTGAGAATTTTTTCAAGAGATTATTTAGGGATCGTGATCGATCT
GTTGAAGATTCTGAATTATTTAGTCTAAAGCGGCAGAGGGAGAAACGGCCAGGATCTCCAAGGCAGCGGAGTGATAGGTCATCTGCTAAACCACCTTTGCCAATCACATCTCAAATTCGAAAAGGGACTTACCATGTGTCTTTGGATTTTGTTCAATCACTATGTGATACATCATATGGTTTGGTGGATGTGTACCCAAT
GGAAGATCGTAAAAATGCCTTGCGGGAGgtactcttcagatattgttcccttggcttgataattttatcatcttggtattaaggttctgcagcattattatagcatgtgatgtatttagatgtttaattttatgttagtttatgaatattattttttgaaaggaaaattagctggtacagaaagatacgtattttacttt
tacaatttatttctgcagTCATTGGCTGAGCTCAATTCCAATCTGGCATCTTCCCAAAGTAGTGGAGGCATCTGCTTTCCAATGGGAAAAGGCTTGTATCGTGTGGTACATATACCAGAAGATGAAGCTGTTCTCTTAAATTCTAGAGAAAAGGCACCTTATCTGATTTGTGTTGAGGTTCTAAAAGGAGAGAACCAAAG
CTTAAATTCACAAAACAAGGATTCTTCGTCTCATAAACTTTCGAGAGGAGGAATTCCATTAGCAAATGGAGATGTGCAGTTGCAACGCCCACCTCCATGGGCATTTCCACTTTGGAATCAGCATGATGTGCAGCGGAATAGCACTGATCAGATGTTAAGATCTGCTTCCCAAGCCATTGATCAAGCGATGGCACATTTAT
GGGAAGCCAAAGTAAAATTTGTGCATGTGAGCCTTTCTGTTGACCGTCGAAGTGTTGAGAGTTCTTCAGAAAATAATGAACCAGGAGTCATATCTGCAAAGATGGTGAATAATGATCTTCAGCAAGACAGTGAACAAACGACTTCTAACAGTTTATGGGTCAATGATGTGAAGACTGAAACAGAAGTTGGAGACAGATTG
GGGGATGCAGGCAGTACTCATCAGGCTGGTAATAGGGATCAGCTCACTGATGGAGAATGGATAAGTGTGACTTTGACTGCAGTTCCTGGTGTCAATATGGAAGATTTAGAAGACCAAGAACCCGCAAAAAGAAAAGAACACCGCCGCGTTCCAAGTACAATAGCAATGGCTGAAGTAAAGGCCGCCGCAGCCAAAGGAGA
GGCCCCAATAGGACTTCCTGTAAAAAAAGTTAGTCATGGTTCATCAAATACAAATTCCGAGGGTAATGATGGTGGCCAACCAAAGGCAACAGATCCATTAGCAGGGGAGCTATGGGAGGTGAAAAAGGAAAGGATCAGAAAGGCTTCTATCTATGGGAAATTGCCTGGTTGGGATCTCCGTTCTATTATTGTGAAAAGTG
GCGATGATTGCAGGCAGGAGCATCTTGCTGTGCAGCTTATTTCTCATTTCTATGATATTTTCCAAGAGGCAGGGCTACCACTTTGGTTGCGTCCTTATGAAGTTCTTGTTACTTCTTCATATACTGCTTTGATTGAAACAATTCCAGACACGGCATCGGTACATGCTATTAAAAGCAGGCATCCGAACATCGCAAGCTTG
CGGGAGTTCTTTTCAGACAAATACAAGGAAAACTCACCTGCTTTCAAGCTTGCGCAGAGAAACTTTGTTGAGAGTATGGCTGGATATTCCATACTATGCTACCTACTTCAGGTGAAAGATCGACATAATGGGAATTTGTTGATGGATGAGGAAGGACATATCATACACATCGATTTTGGTTTTATGCTATCCAATTCTCC
TGGAGGTGTGAATTTTGAAAGTGCTCCCTTCAAGTTGACCCGAGAACTTCTAGAGGTAATGGATTCTGATGCAGAGGGAAGTCCGAGCGAGTTCTTTGACTATTTCAAAGTCCTATGCATTCAAGGATTTTTGACCTGTAGAAAACATGCAGAACGGATCATATTGCTGGTTGAAATGTTGCAGGACTCCGGTTTCCCCT
GTTTTAAAGGTGGACCAAAAACGATACAAACTTTGCGAAAGCGCTTTCATTTAAGTTTGACTGAAGAGCAATGTGTTTCGTTGGTTCTCTCTCTCATCAGCAGCAGCTTAGATGCCTGGCGGACAAGGCAGTATGATTACTACCAACGTGTGTTGAATGGTATCTTGTGAGAATTCATATTGTTCGAAGCATTTCATTCT
CAGGTTTCTGTGTTTCGTTGGCCATCTTTGTTGAGGAGCTTTTGCTTCACCTTCAGGGAAAGGGATTTGTATCATATGCTTCAAGTTGAGCAATTTGATACCTTGCCTGGCAGCATTGTATAAGTAAAAAATTGAAAAGTAGAACTTACATCCTTGATTTTATACGTTTAGCTCGCATTGAAGTCAATGTAGTAGTCAGA
GTTTCTGGAAGATTGAAATTCGAGTAATTCATGTGTATCTCTAATATCTTGCTTATTGTTTTTCCTATTTTAATAGAATGCAGACGAGGCTTCTGCATTGCTTCTGTAAGGAATAACATTTTTTGGGGGTTGTTAAAAGGCCATCGTAATGAGTTTTCAATGATGTTTAGAGTTTCCCCTTGAGAGATATAAAACTGCAC
ACGTTTTATATCTACACCCAGAGACTGCGATTGTTGACTGTTCATGTATATATAAAGCTGGATTGTGCTTTACTGCATAATGTAGATCTCAGACTCTAAATGTGCAACACAAAAAGATACTGTAAATGGTCCAAGACTCCATTCTCTCTTCGGACATGCATTGTAGCAAGGCCTCTATTGTCTCTTCGAACATGTATTGT
AGCAAGGGAAGGCACTGAAGCAACAATGACGATTCTTTACATAAACCGTCTTACTGCGTGGGCAATTCACCTGGTTGGGAACTGGATTTTTCTGACATCAGAGTCTGCAGAGTCTGGTGGTAGCGTTCGTAGTTTGAACCCCATGTATCTCAATAGAGTTCTATAGGAGAATTAAGTTCATAATTTGGAATATTATGTTC
ATAACAGAGTATTCTGAAGTCAAACGTAATTCAAGATATAAAGTCTCTTTTTCTTGCCTCAACCATGGCATATTTTGTCCCCACAAAGCATTTTCGATA
Intron 2 GTTAGTGCTT ... TTTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.89 | 50 | 108 | 94 |
| A2 | 70.66 | 38 | 99 | 84 |
| A3 | 57.1 | 74 | 95 | 102 |
| A4 | 67.1 | 38 | 79 | 76 |
| A5 | 63.92 | 35 | 60 | 64 |
| A6 | 40 | 3 | 1 | 3 |
| A7 | 68.18 | 7 | 15 | 15 |
| A8 | 71.43 | 1 | 2 | 3 |
| A9 | 71.43 | 4 | 9 | 11 |
| A10 | 56.86 | 22 | 29 | 29 |
>TRINITY_DN119005_c2_g1_i10 from sample A2 / Example spliced isoformAATTCATGCTTGTGAAGAGAGAGGAACGTAATTTTATGAAATGGAATAAAAGTGAAAAATTAGAACGAGCTCGGTTTGTGGAGGGGGGACGACAAACCCTGCTCCCTTGTTCTCATCCTTGATTGGCGTGGCGATTATTTGTTTGTGATCAATCTTTGAACGGCTTGTCACCTTCGGCATTCCATGCGATTCGAAACTTC
AGATCACCGCACCTTTTGACAAATTTGGGGCAGATACAGATGCAGATGCAGGCTCTCTCTGACAAATTTGGCGGAGATTGAATCCATCACTTACGCACGAATTTGGTAGGTGTTCATTCTCTTTCGATGTCGCCGATTTAGTCAGTTTTTCGGAGGAATTTGGTGAACATGCGCTGTTCTTCGACGAATTTGGCAAAGTT
AGCGGGGATTGAGTCTTTCCTGGCAGGATTTGGCCTAGTCTACTGTAGAAGAATTCTATCGGCATTGAGTCGTATGTAGGTGACGTCTCCGGAGAAATTGGCCCGGATTAAGGCCTTGCTTTATATGATTTGTTGTACACAGTATATCTCAAAATTGGCGTAGATTAGAGGAAAATGGTGGTTAAATCAGACGATTCGAG
GAAGAAGATTTAAGAAATCGAGGAATCACCAGATCAGTCAGCGTTTCGTCTTAAGTCCAATTACTAAAATCGTGTGTCAACGAATTTGGCTCGAATGTCCAGGGTTTGAATCTAGGGTTAGACAGTTAGCTTGACGCGATGCCGAAGATTTTACAGGGAATCAGGAAAATTTCAGAGTAGGGTTGCTGTATAGATGGACA
TGGTGGGAGTGGATAGAGAAGGGGGCAGCATTACCGTTGTCCAAGAAGCCGCCGCTCATTTGGATCCTTTCGTCAAAGAGGCTTGAAAGGGGGAGGAGAGAACAAAATAGTTCTATCATGGTGCGGCTTCTCGGATTAGCGAGGGCAGAATCAGATGATTTTCCCCGCGACATTACACGGAATGCGAACGGGACAGGAGA
TAACGGCTGGCTCATCCGGTTTTTTGATTCGGCATTTTTCTGCGAGTGGATTGCAGTTAGCTATTTGTACAAACATGAACATCCAGGAGTCAGAGACTATCTTTGCAACAGAATGTATACTTTGCCGCACTCCGGGATCGAGAGCTACCTCTTTCAGATTTGTTACATGCTCGTGCACAAGCCCAGCCCTTCGCTCGACA
AGTTTGTTATCGACATGTGCACTAAGTCTCTTAGGATTGCACTTAAAGTACACTGGTTTCTTATGGCAGAGGCCGAGGATTCAGAGGATAATGAGGGGGTCAGCAGAATCCAGGAAAAGTGTCAGATGGCTGCCACTTTGATGGGGGAGTGGCCACCCTTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGGAGCCGG
AATCGTGTATTGAATAAGCTATTTTCTTCGAAGCAACGGCTTCTGTCTCTTACTTCGCCACCTCATAAATCTCAGCCACTCGCATCTCCTATTGCTGCTACAAATAGTAACACTCAGGAGGAAAACAAAATCGTTGCAGATGAATCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGAGA
TGCACTGTTCAAAAAATTCATTGACAAGGAGGATGAAGAACTGGACAAAACAAAAGAATCATCAAAGGAGGCTGACCAGGAAAGCTTTTTTCGGAGGCTACTAAGGGACAACAAAGAAGAGGATGAAAAAGTAGTTCGCGGCGAAGAACTGGCAAATTCTGAAGGATTCTTCAGGCGATTGTTTCGGGACAGAGGTGATG
CAGAAGAAAAGGGTGGGGCCAAATCAGGGGAAGAAGATGAAAAAGATGGATTTTTCCGCAGGCTTTTCAGGGAGAAGAGCGAGGACCGTGAAAAGAGAGATGGGCAGGATAAAACCGAGGATGATGACAAGGGCAATGGCAGCTGTGATGAGGATGAGGGTTCTGATTTCTTGTCGTTTCGGAGGTTATTCAGGATTCAC
CCCGAAGATGAGAAGACCTTGTCGACTTCCATGGAGAATTGTTCCTTAAGTACTCCTGAAAGCAGTCCTGGCACTGAGAATTTTTTCAAGAGATTATTTAGGGATCGTGATCGATCTGTTGAAGATTCTGAATTATTTAGTCTAAAGCGGCAGAGGGAGAAACGGCCAGGATCTCCAAGGCAGCGGAGTGATAGGTCATC
TGCTAAACCACCTTTGCCAATCACATCTCAAATTCGAAAAGGGACTTACCATGTGTCTTTGGATTTTGTTCAATCACTATGTGATACATCATATGGTTTGGTGGATGTGTACCCAATGGAAGATCGTAAAAATGCCTTGCGGGAGTCATTGGCTGAGCTCAATTCCAATCTGGCATCTTCCCAAAGTAGTGGAGGCATCT
GCTTTCCAATGGGAAAAGGCTTGTATCGTGTGGTACATATACCAGAAGATGAAGCTGTTCTCTTAAATTCTAGAGAAAAGGCACCTTATCTGATTTGTGTTGAGGTTCTAAAAGGAGAGAACCAAAGCTTAAATTCACAAAACAAGGATTCTTCGTCTCATAAACTTTCGAGAGGAGGAATTCCATTAGCAAATGGAGAT
GTGCAGTTGCAACGCCCACCTCCATGGGCATTTCCACTTTGGAATCAGCATGATGTGCAGCGGAATAGCACTGATCAGATGTTAAGATCTGCTTCCCAAGCCATTGATCAAGCGATGGCACATTTATGGGAAGCCAAAGTAAAATTTGTGCATGTGAGCCTTTCTGTTGACCGTCGAAGTGTTGAGAGTTCTTCAGAAAA
TAATGAACCAGGAGTCATATCTGCAAAGATGGTGAATAATGATCTTCAGCAAGACAGTGAACAAACGACTTCTAACAGTTTATGGGTCAATGATGTGAAGACTGAAACAGAAGTTGGAGACAGATTGGGGGATGCAGGCAGTACTCATCAGGCTGGTAATAGGGATCAGCTCACTGATGGAGAATGGATAAGTGTGACTT
TGACTGCAGTTCCTGGTGTCAATATGGAAGATTTAGAAGACCAAGAACCCGCAAAAAGAAAAGAACACCGCCGCGTTCCAAGTACAATAGCAATGGCTGAAGTAAAGGCCGCCGCAGCCAAAGGAGAGGCCCCAATAGGACTTCCTGTAAAAAAAGTTAGTCATGGTTCATCAAATACAAATTCCGAGGGTAATGATGGT
GGCCAACCAAAGGCAACAGATCCATTAGCAGGGGAGCTATGGGAGGTGAAAAAGGAAAGGATCAGAAAGGCTTCTATCTATGGGAAATTGCCTGGTTGGGATCTCCGTTCTATTATTGTGAAAAGTGGCGATGATTGCAGGCAGGAGCATCTTGCTGTGCAGCTTATTTCTCATTTCTATGATATTTTCCAAGAGGCAGG
GCTACCACTTTGGTTGCGTCCTTATGAAGTTCTTGTTACTTCTTCATATACTGCTTTGATTGAAACAATTCCAGACACGGCATCGGTACATGCTATTAAAAGCAGGCATCCGAACATCGCAAGCTTGCGGGAGTTCTTTTCAGACAAATACAAGGAAAACTCACCTGCTTTCAAGCTTGCGCAGAGAAACTTTGTTGAGA
GTATGGCTGGATATTCCATACTATGCTACCTACTTCAGGTGAAAGATCGACATAATGGGAATTTGTTGATGGATGAGGAAGGACATATCATACACATCGATTTTGGTTTTATGCTATCCAATTCTCCTGGAGGTGTGAATTTTGAAAGTGCTCCCTTCAAGTTGACCCGAGAACTTCTAGAGGTAATGGATTCTGATGCA
GAGGGAAGTCCGAGCGAGTTCTTTGACTATTTCAAAGTCCTATGCATTCAAGGATTTTTGACCTGTAGAAAACATGCAGAACGGATCATATTGCTGGTTGAAATGTTGCAGGACTCCGGTTTCCCCTGTTTTAAAGGTGGACCAAAAACGATACAAACTTTGCGAAAGCGCTTTCATTTAAGTTTGACTGAAGAGCAATG
TGTTTCGTTGGTTCTCTCTCTCATCAGCAGCAGCTTAGATGCCTGGCGGACAAGGCAGTATGATTACTACCAACGTGTGTTGAATGGTATCTTGTGAGAATTCATATTGTTCGAAGCATTTCATTCTCAGGTTTCTGTGTTTCGTTGGCCATCTTTGTTGAGGAGCTTTTGCTTCACCTTCAGGGAAAGGGATTTGTATC
ATATGCTTCAAGTTGAGCAATTTGATACCTTGCCTGGCAGCATTGTATAAGTAAAAAATTGAAAAGTAGAACTTACATCCTTGATTTTATACGTTTAGCTCGCATTGAAGTCAATGTAGTAGTCAGAGTTTCTGGAAGATTGAAATTCGAGTAATTCATGTGTATCTCTAATATCTTGCTTATTGTTTTTCCTATTTTAA
TAGAATGCAGACGAGGCTTCTGCATTGCTTCTGTAAGGAATAACATTTTTTGGGGGTTGTTAAAAGGCCATCGTAATGAGTTTTCAATGATGTTTAGAGTTTCCCCTTGAGAGATATAAAACTGCACACGTTTTATATCTACACCCAGAGACTGCGATTGTTGACTGTTCATGTATATATAAAGCTGGATTGTGCTTTAC
TGCATAATGTAGATCTCAGACTCTAAATGTGCAACACAAAAAGATACTGTAAATGGTCCAAGACTCCATTCTCTCTTCGGACATGCATTGTAGCAAGGCCTCTATTGTCTCTTCGAACATGTATTGTAGCAAGGGAAGGCACTGAAGCAACAATGACGATTCTTTACATAAACCGTCTTACTGCGTGGGCAATTCACCTG
GTTGGGAACTGGATTTTTCTGACATCAGAGTCTGCAGAGTCTGGTGGTAGCGTTCGTAGTTTGAACCCCATGTATCTCAATAGAGTTCTATAGGAGAATTAAGTTCATAATTTGGAATATTATGTTCATAACAGAGTATTCTGAAGTCAAACGTAATTCAAGATATAAAGTCTCTTTTTCTTGCCTCAACCATGGCATAT
TTTGTCCCCACAAAGCATTTTCGATA
>TRINITY_DN119005_c2_g1_i2 from sample A2 / Example unspliced isoform:AATTCATGCTTGTGAAGAGAGAGGAACGTAATTTTATGAAATGGAATAAAAGTGAAAAATTAGAACGAGCTCGGTTTGTGGAGGGGGGACGACAAACCCTGCTCCCTTGTTCTCATCCTTGATTGGCGTGGCGATTATTTGTTTGTGATCAATCTTTGAACGGCTTGTCACCTTCGGCATTCCATGCGATTCGAAACTTC
AGATCACCGCACCTTTTGACAAATTTGGGGCAGATACAGATGCAGATGCAGGCTCTCTCTGACAAATTTGGCGGAGATTGAATCCATCACTTACGCACGAATTTGGTAGGTGTTCATTCTCTTTCGATGTCGCCGATTTAGTCAGTTTTTCGGAGGAATTTGGTGAACATGCGCTGTTCTTCGACGAATTTGGCAAAGgt
tagtgctttcttccgcgcatgttcttgcagatttggtcctgtcgtcaaatttgtccgaaacaaggatattttttcatgcagTTAGCGGGGATTGAGTCTTTCCTGGCAGGATTTGGCCTAGTCTACTGTAGAAGAATTCTATCGGCATTGAGTCGTATGTAGGTGACGTCTCCGGAGAAATTGGCCCGGATTAAGGCCTT
GCTTTATATGATTTGTTGTACACAGTATATCTCAAAATTGGCGTAGATTAGAGGAAAATGGTGGTTAAATCAGACGATTCGAGGAAGAAGATTTAAGAAATCGAGGAATCACCAGATCAGTCAGCGTTTCGTCTTAAGTCCAATTACTAAAATCGTGTGTCAACGAATTTGGCTCGAATGTCCAGGGTTTGAATCTAGGG
TTAGACAGTTAGCTTGACGCGATGCCGAAGATTTTACAGGGAATCAGGAAAATTTCAGAGTAGGGTTGCTGTATAGATGGACATGGTGGGAGTGGATAGAGAAGGGGGCAGCATTACCGTTGTCCAAGAAGCCGCCGCTCATTTGGATCCTTTCGTCAAAGAGGCTTGAAAGGGGGAGGAGAGAACAAAATAGTTCTATC
ATGGTGCGGCTTCTCGGATTAGCGAGGGCAGAATCAGATGATTTTCCCCGCGACATTACACGGAATGCGAACGGGACAGGAGATAACGGCTGGCTCATCCGGTTTTTTGATTCGGCATTTTTCTGCGAGTGGATTGCAGTTAGCTATTTGTACAAACATGAACATCCAGGAGTCAGAGACTATCTTTGCAACAGAATGTA
TACTTTGCCGCACTCCGGGATCGAGAGCTACCTCTTTCAGATTTGTTACATGCTCGTGCACAAGCCCAGCCCTTCGCTCGACAAGTTTGTTATCGACATGTGCACTAAGTCTCTTAGGATTGCACTTAAAGTACACTGGTTTCTTATGGCAGAGGCCGAGGATTCAGAGGATAATGAGGGGGTCAGCAGAATCCAGGAAA
AGTGTCAGATGGCTGCCACTTTGATGGGGGAGTGGCCACCCTTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGGAGCCGGAATCGTGTATTGAATAAGCTATTTTCTTCGAAGCAACGGCTTCTGTCTCTTACTTCGCCACCTCATAAATCTCAGCCACTCGCATCTCCTATTGCTGCTACAAATAGTAACACTCAG
GAGGAAAACAAAATCGTTGCAGATGAATCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGAGATGCACTGTTCAAAAAATTCATTGACAAGGAGGATGAAGAACTGGACAAAACAAAAGAATCATCAAAGGAGGCTGACCAGGAAAGCTTTTTTCGGAGGCTACTAAGGGACAACAAAGA
AGAGGATGAAAAAGTAGTTCGCGGCGAAGAACTGGCAAATTCTGAAGGATTCTTCAGGCGATTGTTTCGGGACAGAGGTGATGCAGAAGAAAAGGGTGGGGCCAAATCAGGGGAAGAAGATGAAAAAGATGGATTTTTCCGCAGGCTTTTCAGGGAGAAGAGCGAGGACCGTGAAAAGAGAGATGGGCAGGATAAAACCG
AGGATGATGACAAGGGCAATGGCAGCTGTGATGAGGATGAGGGTTCTGATTTCTTGTCGTTTCGGAGGTTATTCAGGATTCACCCCGAAGATGAGAAGACCTTGTCGACTTCCATGGAGAATTGTTCCTTAAGTACTCCTGAAAGCAGTCCTGGCACTGAGAATTTTTTCAAGAGATTATTTAGGGATCGTGATCGATCT
GTTGAAGATTCTGAATTATTTAGTCTAAAGCGGCAGAGGGAGAAACGGCCAGGATCTCCAAGGCAGCGGAGTGATAGGTCATCTGCTAAACCACCTTTGCCAATCACATCTCAAATTCGAAAAGGGACTTACCATGTGTCTTTGGATTTTGTTCAATCACTATGTGATACATCATATGGTTTGGTGGATGTGTACCCAAT
GGAAGATCGTAAAAATGCCTTGCGGGAGTCATTGGCTGAGCTCAATTCCAATCTGGCATCTTCCCAAAGTAGTGGAGGCATCTGCTTTCCAATGGGAAAAGGCTTGTATCGTGTGGTACATATACCAGAAGATGAAGCTGTTCTCTTAAATTCTAGAGAAAAGGCACCTTATCTGATTTGTGTTGAGGTTCTAAAAGGAG
AGAACCAAAGCTTAAATTCACAAAACAAGGATTCTTCGTCTCATAAACTTTCGAGAGGAGGAATTCCATTAGCAAATGGAGATGTGCAGTTGCAACGCCCACCTCCATGGGCATTTCCACTTTGGAATCAGCATGATGTGCAGCGGAATAGCACTGATCAGATGTTAAGATCTGCTTCCCAAGCCATTGATCAAGCGATG
GCACATTTATGGGAAGCCAAAGTAAAATTTGTGCATGTGAGCCTTTCTGTTGACCGTCGAAGTGTTGAGAGTTCTTCAGAAAATAATGAACCAGGAGTCATATCTGCAAAGATGGTGAATAATGATCTTCAGCAAGACAGTGAACAAACGACTTCTAACAGTTTATGGGTCAATGATGTGAAGACTGAAACAGAAGTTGG
AGACAGATTGGGGGATGCAGGCAGTACTCATCAGGCTGGTAATAGGGATCAGCTCACTGATGGAGAATGGATAAGTGTGACTTTGACTGCAGTTCCTGGTGTCAATATGGAAGATTTAGAAGACCAAGAACCCGCAAAAAGAAAAGAACACCGCCGCGTTCCAAGTACAATAGCAATGGCTGAAGTAAAGGCCGCCGCAG
CCAAAGGAGAGGCCCCAATAGGACTTCCTGTAAAAAAAGTTAGTCATGGTTCATCAAATACAAATTCCGAGGGTAATGATGGTGGCCAACCAAAGGCAACAGATCCATTAGCAGGGGAGCTATGGGAGGTGAAAAAGGAAAGGATCAGAAAGGCTTCTATCTATGGGAAATTGCCTGGTTGGGATCTCCGTTCTATTATT
GTGAAAAGTGGCGATGATTGCAGGCAGGAGCATCTTGCTGTGCAGCTTATTTCTCATTTCTATGATATTTTCCAAGAGGCAGGGCTACCACTTTGGTTGCGTCCTTATGAAGTTCTTGTTACTTCTTCATATACTGCTTTGATTGAAACAATTCCAGACACGGCATCGGTACATGCTATTAAAAGCAGGCATCCGAACAT
CGCAAGCTTGCGGGAGTTCTTTTCAGACAAATACAAGGAAAACTCACCTGCTTTCAAGCTTGCGCAGAGAAACTTTGTTGAGAGTATGGCTGGATATTCCATACTATGCTACCTACTTCAGGTGAAAGATCGACATAATGGGAATTTGTTGATGGATGAGGAAGGACATATCATACACATCGATTTTGGTTTTATGCTAT
CCAATTCTCCTGGAGGTGTGAATTTTGAAAGTGCTCCCTTCAAGTTGACCCGAGAACTTCTAGAGGTAATGGATTCTGATGCAGAGGGAAGTCCGAGCGAGTTCTTTGACTATTTCAAAGTCCTATGCATTCAAGGATTTTTGACCTGTAGAAAACATGCAGAACGGATCATATTGCTGGTTGAAATGTTGCAGGACTCC
GGTTTCCCCTGTTTTAAAGGTGGACCAAAAACGATACAAACTTTGCGAAAGCGCTTTCATTTAAGTTTGACTGAAGAGCAATGTGTTTCGTTGGTTCTCTCTCTCATCAGCAGCAGCTTAGATGCCTGGCGGACAAGGCAGTATGATTACTACCAACGTGTGTTGAATGGTATCTTGTGAGAATTCATATTGTTCGAAGC
ATTTCATTCTCAGGTTTCTGTGTTTCGTTGGCCATCTTTGTTGAGGAGCTTTTGCTTCACCTTCAGGGAAAGGGATTTGTATCATATGCTTCAAGTTGAGCAATTTGATACCTTGCCTGGCAGCATTGTATAAGTAAAAAATTGAAAAGTAGAACTTACATCCTTGATTTTATACGTTTAGCTCGCATTGAAGTCAATGT
AGTAGTCAGAGTTTCTGGAAGATTGAAATTCGAGTAATTCATGTGTATCTCTAATATCTTGCTTATTGTTTTTCCTATTTTAATAGAATGCAGACGAGGCTTCTGCATTGCTTCTGTAAGGAATAACATTTTTTGGGGGTTGTTAAAAGGCCATCGTAATGAGTTTTCAATGATGTTTAGAGTTTCCCCTTGAGAGATAT
AAAACTGCACACGTTTTATATCTACACCCAGAGACTGCGATTGTTGACTGTTCATGTATATATAAAGCTGGATTGTGCTTTACTGCATAATGTAGATCTCAGACTCTAAATGTGCAACACAAAAAGATACTGTAAATGGTCCAAGACTCCATTCTCTCTTCGGACATGCATTGTAGCAAGGCCTCTATTGTCTCTTCGAA
CATGTATTGTAGCAAGGGAAGGCACTGAAGCAACAATGACGATTCTTTACATAAACCGTCTTACTGCGTGGGCAATTCACCTGGTTGGGAACTGGATTTTTCTGACATCAGAGTCTGCAGAGTCTGGTGGTAGCGTTCGTAGTTTGAACCCCATGTATCTCAATAGAGTTCTATAGGAGAATTAAGTTCATAATTTGGAA
TATTATGTTCATAACAGAGTATTCTGAAGTCAAACGTAATTCAAGATATAAAGTCTCTTTTTCTTGCCTCAACCATGGCATATTTTGTCCCCACAAAGCATTTTCGATA
Intron 3 GTAATCATAC ... TTCATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.73 | 104 | 10 | 5 |
| A2 | 7.34 | 82 | 6 | 7 |
| A3 | 6.67 | 77 | 6 | 5 |
| A4 | 4.58 | 93.8 | 3 | 6 |
| A5 | 9.4 | 53 | 3 | 8 |
| A6 | 1.44 | 103 | 0 | 3 |
| A7 | 0.5 | 198 | 0 | 2 |
| A8 | 0 | 124 | 0 | 0 |
| A9 | 0 | 147 | 0 | 0 |
| A10 | 0.57 | 175 | 0 | 2 |
>TRINITY_DN119005_c2_g1_i5 from sample A2 / Example spliced isoformAATTCATGCTTGTGAAGAGAGAGGAACGTAATTTTATGAAATGGAATAAAAGTGAAAAATTAGAACGAGCTCGGTTTGTGGAGGGGGGACGACAAACCCTGCTCCCTTGTTCTCATCCTTGATTGGCGTGGCGATTATTTGTTTGTGATCAATCTTTGAACGGCTTGTCACCTTCGGCATTCCATGCGATTCGAAACTTC
AGATCACCGCACCTTTTGACAAATTTGGGGCAGATACAGATGCAGATGCAGGCTCTCTCTGACAAATTTGGCGGAGATTGAATCCATCACTTACGCACGAATTTGGTAGGTGTTCATTCTCTTTCGATGTCGCCGATTTAGTCAGTTTTTCGGAGGAATTTGGTGAACATGCGCTGTTCTTCGACGAATTTGGCAAAGGT
TAGTGCTTTCTTCCGCGCATGTTCTTGCAGATTTGGTCCTGTCGTCAAATTTGTCCGAAACAAGGATATTTTTTCATGCAGTTAGCGGGGATTGAGTCTTTCCTGGCAGGATTTGGCCTAGTCTACTGTAGAAGAATTCTATCGGCATTGAGTCGTATGTAGGTGACGTCTCCGGAGAAATTGGCCCGGATTAAGGCCTT
GCTTTATATGATTTGTTGTACACAGTATATCTCAAAATTGGCGTAGATTAGAGGAAAATGGTGGTTAAATCAGACGATTCGAGGAAGAAGATTTAAGAAATCGAGGAATCACCAGATCAGTCAGCGTTTCGTCTTAAGTCCAATTACTAAAATCGTGTGTCAACGAATTTGGCTCGAATGTCCAGGGTTTGAATCTAGGG
TTAGACAGTTAGCTTGACGCGATGCCGAAGATTTTACAGGGAATCAGGAAAATTTCAGAGTAGGGTTGCTGTATAGATGGACATGGTGGGAGTGGATAGAGAAGGGGGCAGCATTACCGTTGTCCAAGAAGCCGCCGCTCATTTGGATCCTTTCGTCAAAGAGGCTTGAAAGGGGGAGGAGAGAACAAAATAGTTCTATC
ATGGTGCGGCTTCTCGGATTAGCGAGGGCAGAATCAGATGATTTTCCCCGCGACATTACACGGAATGCGAACGGGACAGGAGATAACGGCTGGCTCATCCGGTTTTTTGATTCGGCATTTTTCTGCGAGTGGATTGCAGTTAGCTATTTGTACAAACATGAACATCCAGGAGTCAGAGACTATCTTTGCAACAGAATGTA
TACTTTGCCGCACTCCGGGATCGAGAGCTACCTCTTTCAGATTTGTTACATGCTCGTGCACAAGCCCAGCCCTTCGCTCGACAAGTTTGTTATCGACATGTGCACTAAGTCTCTTAGGATTGCACTTAAAGTACACTGGTTTCTTATGGCAGAGGCCGAGGATTCAGAGGATAATGAGGGGGTCAGCAGAATCCAGGAAA
AGTGTCAGATGGCTGCCACTTTGATGGGGGAGTGGCCACCCTTGGTCAGGCCTCAGAATAATCTGCCTAGTCCTGGGAGCCGGAATCGTGTATTGAATAAGCTATTTTCTTCGAAGCAACGGCTTCTGTCTCTTACTTCGCCACCTCATAAATCTCAGCCACTCGCATCTCCTATTGCTGCTACAAATAGTAACACTCAG
GAGGAAAACAAAATCGTTGCAGATGAATCCGAGTCATCCTTGAAAGTTTTCAAGAAACTCATGCCTGGACCAAAGGTGAGAGATGCACTGTTCAAAAAATTCATTGACAAGGAGGATGAAGAACTGGACAAAACAAAAGAATCATCAAAGGAGGCTGACCAGGAAAGCTTTTTTCGGAGGCTACTAAGGGACAACAAAGA
AGAGGATGAAAAAGTAGTTCGCGGCGAAGAACTGGCAAATTCTGAAGGATTCTTCAGGCGATTGTTTCGGGACAGAGGTGATGCAGAAGAAAAGGGTGGGGCCAAATCAGGGGAAGAAGATGAAAAAGATGGATTTTTCCGCAGGCTTTTCAGGGAGAAGAGCGAGGACCGTGAAAAGAGAGATGGGCAGGATAAAACCG
AGGATGATGACAAGGGCAATGGCAGCTGTGATGAGGATGAGGGTTCTGATTTCTTGTCGTTTCGGAGGTTATTCAGGATTCACCCCGAAGATGAGAAGACCTTGTCGACTTCCATGGAGAATTGTTCCTTAAGTACTCCTGAAAGCAGTCCTGGCACTGAGAATTTTTTCAAGAGATTATTTAGGGATCGTGATCGATCT
GTTGAAGATTCTGAATTATTTAGTCTAAAGCGGCAGAGGGAGAAACGGCCAGGATCTCCAAGGCAGCGGAGTGATAGGTCATCTGCTAAACCACCTTTGCCAATCACATCTCAAATTCGAAAAGGGACTTACCATGTGTCTTTGGATTTTGTTCAATCACTATGTGATACATCATATGGTTTGGTGGATGTGTACCCAAT
GGAAGATCGTAAAAATGCCTTGCGGGAGTCATTGGCTGAGCTCAATTCCAATCTGGCATCTTCCCAAAGTAGTGGAGGCATCTGCTTTCCAATGGGAAAAGGCTTGTATCGTGTGGTACATATACCAGAAGATGAAGCTGTTCTCTTAAATTCTAGAGAAAAGGCACCTTATCTGATTTGTGTTGAGGTTCTAAAAGGAG
AGAACCAAAGCTTAAATTCACAAAACAAGGATTCTTCGTCTCATAAACTTTCGAGAGGAGGAATTCCATTAGCAAATGGAGATGTGCAGTTGCAACGCCCACCTCCATGGGCATTTCCACTTTGGAATCAGCATGATGTGCAGCGGAATAGCACTGATCAGATGTTAAGATCTGCTTCCCAAGCCATTGATCAAGCGATG
GCACATTTATGGGAAGCCAAAGTAAAATTTGTGCATGTGAGCCTTTCTGTTGACCGTCGAAGTGTTGAGAGTTCTTCAGAAAATAATGAACCAGGAGTCATATCTGCAAAGATGGTGAATAATGATCTTCAGCAAGACAGTGAACAAACGACTTCTAACAGTTTATGGGTCAATGATGTGAAGACTGAAACAGAAGTTGG
AGACAGATTGGGGGATGCAGGCAGTACTCATCAGGCTGGTAATAGGGATCAGCTCACTGATGGAGAATGGATAAGTGTGACTTTGACTGCAGTTCCTGGTGTCAATATGGAAGATTTAGAAGACCAAGAACCCGCAAAAAGAAAAGAACACCGCCGCGTTCCAAGTACAATAGCAATGGCTGAAGTAAAGGCCGCCGCAG
CCAAAGGAGAGGCCCCAATAGGACTTCCTGTAAAAAAAGTTAGTCATGGTTCATCAAATACAAATTCCGAGGGTAATGATGGTGGCCAACCAAAGGCAACAGATCCATTAGCAGGGGAGCTATGGGAGGTGAAAAAGGAAAGGATCAGAAAGGCTTCTATCTATGGGAAATTGCCTGGTTGGGATCTCCGTTCTATTATT
GTGAAAAGTGGCGATGATTGCAGGCAGGAGCATCTTGCTGTGCAGCTTATTTCTCATTTCTATGATATTTTCCAAGAGGCAGGGCTACCACTTTGGTTGCGTCCTTATGAAGTTCTTGTTACTTCTTCATATACTGCTTTGATTGAAACAATTCCAGACACGGCATCGGTACATGCTATTAAAAGCAGGCATCCGAACAT
CGCAAGCTTGCGGGAGTTCTTTTCAGACAAATACAAGGAAAACTCACCTGCTTTCAAGCTTGCGCAGGTTATTTTTCTCATTTTCTCATTTTATCTTCTATTTCAGCAAAAAAACCTGCACTTTTATTACTCTCATTATAGGTTATGAATCTATGATGTTATTTCTCAGTCCTAATTTTGACATCTGAAATGAAAACCTG
ACATTAGAATTTATTTTTTATTTTTATGTAGGAATTTGATTTCTCTTTAATACTTTATTATTCAGGAATCAGAAATTTTAATTCAGAATTTGTTTATGTATGTTTCTATGAATGATGAATCCAAATCTTGAATATGGATTATGATTGTATGAATGATGAATCCAAATCTTGAATATGAATTGTGATGAAGTCAGAAACAA
TTTAATCTCAATTTTTTTCCCAAAGCTCTCATCTTTTTTTTTTCGACGTATAAGTTAAATATATATTTAAAAAAACATTGGGTTAGGGTGCC
>TRINITY_DN119005_c2_g1_i14 from sample A2 / Example unspliced isoform:TTGTAATATAATTTTTGCTAAGAAATCGGTCTCTGCTCTTTGGATTTGCTTTCAGCTTTTGCCTTTTATTTAGATGTTGTTCAGGATGCTGATTTTACCTCTGGTAATTCTGCAGATTATTGTGAAAAGTGGCGATGATTGCAGGCAGGAGCATCTTGCTGTGCAGCTTATTTCTCATTTCTATGgtaatcatactttat
ttcacttacatgatcaaattgaggctgcgaaggttttggttagacaaaaggttggaagacttattttatagttaaagattgagcattgcattgacatcatcaattaaattacaaaatctagcatttaaattgggaaaccagctgcatgatttagcagtgctccgtgatttacagttctttgcatatttgttttcattcgt
aaatatttctggctgtgttgcatatatctggatgtagcagagagtattccagcaagcacagctgcttctgccttggcagctgggggttctttggcaactgctattttggctcatgttctactcttttactgatccaattattagcctttagggttaattactcttccatttgcatttcacactttatcagctacatttct
gcatgttcacaaggtgactctggaaaaagaacacacctttaaaatcttggaggagtggctcttcgggccaaaagtggaattctattaatggtttaacataggaaatacctttctccttttgcatcgaaagggaaaattgcacttttttcattctatggcatggctggcactcattatggcagtaagaaaatgatcgaggg
acagtctctctatactgttctgatagtgaatgtttgttacatgtaatggttcttaacttttaacaactgtgcagacgggtatccacaatatagacttaataaactgattatgtagttgaaatatgccaaccgaggttcttcataccaagcttgtgatatgttcaatctgtacaataagagctactttcccagttattttg
tgcccctttctttgtgtactatgtggtcacaaactaacggggaatctattatttgccctttgaatgagacaacatcgtcagtgctgatagcaactaacagcttttattcttgttgattcttgtaacctaaatggttgtaaagcttgagatacatagatgtcaaaaaaggaaaagatccatgcaagtttcagagttgactg
ttaatgctatttttgaaagcatgcttttgctcagatggtctggttgtaggtgggttcatgagtgtttaattttcataagaattttatacaagggatcttgttgactcgtatctgatgtgggattggtctggatgtaatatgattaggtttggggatcctctttgattagtatgaacattttctattattcatgtttatct
atacgccatgttgaagctgcaaatgccatctttccggttaaaagttattacttgattgtgcacctcatagattcatattgccaaggccaatagaaatgaaaaacattgtcgtggtggccatattgttgttctacagctattcaaatgctactgtttgtataccaacctataatcatctcaattatgtatctatcaagtgc
caagacggatcaaatctttggaggtgcaaacctttttatggtgcaaaaacttaaggaatgatttgcacctgagggatttcatgattcatccttctcggtgcttgatagatctgatttcatgatttcatgatttattattattttgtaaatttgaaaagctgacattgtgtcagcaatacactcacaagtaacacttctaa
tcggtactaggctgtagaatgtgcatttcaatacaattattttggatatacttttactatgcagcaatttgactttttagatgtctaatctgattggagctattctttcattgtagATATTTTCCAAGAGGCAGGGCTACCACTTTGGTTGCGTCCTTATGAAGTTCTTGTTACTTCTTCATATACTGCTTTGATTGAAA
CAATTCCAGACACGGTAACTACCATTGTTGGCATCTATGACTTTTCTCTCATTTGGCATCTTGCAATTGTTTCTTTGGCTCTTAAATTAGCATTTGTTGAGCAGGCATCGGCAC
Intron 4 GTAAGATCTG ... GTACATGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.43 | 39.3 | 6.3 | 9 |
| A2 | 22.03 | 26.3 | 4 | 7 |
| A3 | 17.9 | 41 | 5.7 | 8 |
| A4 | 20.92 | 31.5 | 3 | 7.7 |
| A5 | 17.08 | 12.2 | 3.3 | 2 |
| A6 | 0 | 6.2 | 0.3 | 0 |
| A7 | 11.67 | 34.7 | 4.7 | 4 |
| A8 | 27.4 | 14.7 | 0.7 | 5.3 |
| A9 | 20.96 | 25 | 2.3 | 6 |
| A10 | 28.89 | 30.5 | 2 | 12 |
>TRINITY_DN128453_c1_g1_i9 from sample A1 / Example spliced isoformAGGGAAGGGAAAGGAACAAGTACAGCATCAAAGAGGATGACAACATAGTGAGCTTATCTGTGACTTTAAAAATGAACGAATGAAAACGGCAACTGGAGAGCGGATGCAATCAAGAACCCATATGCCATGCCACTAACGTCCGCCATGGCAGGCGATGGAAGCATTTTGGCCACGGAAGTCCTCGCAATTGGAAGCAGCAG
CAGCAGTTTCCGTCTGCTGAATTTGAGACTTGGCCGTCGAAAATGGACGGTCTCCCAACCCGTCCGCTTCCATTCCTCCTTCACGCCGAAAATAGAACTGAATTTGACGATGAAATCCTCTTCCTACGAACGAGCCGGCCGTCGATTTGCTCATCAGAAATTGAACATTCTATGCGCCAACGACCACGGCAAGGGCGAGG
CCGACCACTCTCATCACCATCACCATCATCAACACCACCATCACCATCAGGAGAAGGGGCCGTCTTTTGGACATTCGGATGAATGCGAAGAGCGGCAGTGGAACGAGGCCCAGAAGGGGCTCCTATTGCTGGCGAAGGCTACGGGATGGGTCAATTTGGCGGATGCTCTGCGGGAGAATTTCCGTCTCTGTTGTTCTTCC
ATGGTTTTATTACTTCTGGCGGCCGTTTGCCCATACGTCATGCCCAAGGCTGTTTCAAGATCAGCTCAGAATGCGCTAATTGCACTCGCATTTCCTCTCGTTGGGATATCGGCTGCACTTGATGCATCTATTGACATTGCTGGTGGAAGAGTCAATATCCATGTTCTCATGACGTTAGCTGCATTTGCATCTGTGTTTAT
GGGAAACACCCTGGAAGGTGGATTGCTTCTTGCCATGTTTAACCTTGCTCATATTGCGGAGGAATATTACACAAAGCGAGCGATGGGTGATGTCAAGGCACTAAAGGAAAGCAATCCAGAATTTGCTCTTGTTTTGGATGCATTTGATTCAGCGGCACCTCATCATTTTTCCTCAATGGCTTCCAAACGCATTCCTGTGC
ACGATTTGGAAGTTGGTTCATACATATTGGTCCGGGCTGGTGAGGCTGTACCAGTCGATGGAGAAGTATGCCAAGGAATATCTATGGTGACTGTTGAACACTTAACAGGAGAGGCTAACCCCCTTGAGAAGCAAGTTGGAGATAGTGTTCCTGGTGGTGCAAGAAACTTGGATGGAATGTTGATAATCAAGGCAACAAAG
ACATGGAAGGATTCAACGTTGTCCAAGATTATGCATTTGACTAAAGAAGCACAACTTAACAGACCAAAATTACAGAGATGGCTTGATGAATTTGGAGAACGTTACAGCCAGGCTGTTGTGGTGGCATCAGCTGTAGTGGCTCTTTTTGGGCCATTTGTATTCAAGTGGCCATTTCTAAGTACTCCAGGAGCCCGAGGATC
TATTTACAGGGCATTGTGCCTCATGGTAGCAGCTTCACCATGTGCATTAGCAGTGGCTCCTCTAGCTTATGCAACTGCAATTAGTGCCTGTGCAAGTAAGGGTATCCTGTTAAAAGGTGGACATGCATTGGATGCACTTGCATCTTGTGATACTATTGCGTTTGACAAAACTGGAACTTTAACGACAGGGGGACTTGTCT
GCAAGGGAATTGAACCAATCCATGGACATAGTTTAACTGGATGGAAGGACAAGAATGTTAATGCTTGCTGCAATCCAAGCTGTGAAAAGGAAGCTCTTGCAGTGGCATCCGCCATGGAAAAAGGAACCACACATCCCATTGCAAGAGCAGTTGCGGATCACAGCCTTGGGAAAGAACTTCCTCCTGTTTCAATTGAGCAT
TTTGAATCACTACCAGGAAAAGGTCTGGTTGCTACATTGACTGGCATACAGTCAGGAGATGGCGTTCCTCTAAAGGCCACACTTGGTTCGCTGGAGTATATTGCATCTTTATTTAGAAATGAGTTTGAATCAAGGCAAATAAAAGAGGCAGCAAGTGCATCTCCTTATGGTCAAGATCTGGTGCATGCAGTACTATCTGT
AAACAATAAGGTAACTCTTTTTCACTTCGAGGATAAAATTCGACCTGGAGCTACAGATGTTGTGTCCACATTAAAAAATCAAGCCAGCCTTCGTTTGATGATGTTGACAGGCGATCATGCATCAAGTGCATCGCGGATTGCTAAGGCTGTTGGTATTGATGAGGTCCATTCTGGTCTTAAGCCTGAGGATAAGCTCCATC
GAGTAAAAGCTCTTTCACGCAATGGAGCTGGGGGTTTAATTATGGTGGGTGATGGAATAAATGATGCACCAGCATTGGCTGCTGCAACTGTAGGGATTGTTCTTGCACAACGTGCAAGTGCGACAGCAATAGCTGTAGCAGATGTTCTTCTTCTAGAGGATAATATTAAAAGGGTACCTTTCGTTATTGCAAAAGCCCGT
CAAACAACTTCCTTGGTAAAGCAAAGCGTGCTGCTTGCATTATCGTGTATCTTTTTCGCTGCTCTTCCATCGGTGATGGGATTTCTGCCTCTCTGGCTGACGGTATGGTATATTTGATCACCCTCTATGTGTTTTGGATGGCATGTGTGTAATCTAATCTGTAAGGCCAAATCTGCC
>TRINITY_DN128453_c1_g1_i7 from sample A1 / Example unspliced isoform:CATGTTTAACCTTGCTCATATTGgtaagatctgagactatgaacttttaatttgtatggtacagtgttttctttattatgttctataggaattcaggatgctagtgtttcctctacttggactacatcatacctctgagggaactgtacatgtagCGGAGGAATATTACACAAAGCGAGCGATGGGTGATGTCAAGGCAC
TAAAGGAAAGCAATCCAGAATTTGCTCTTGTTTTGGATGCATTTGATTCAGCGGCACCTCATCATTTTTCCTCAATGGCTTCCAAACGCATTCCTGTGCACGATTTGGAAGTTGGTTCATACATATTGGTCCGGGCTGGTGAGGCTGTACCAGTCGATGGAGAAGTATGCCAAGGAATATCTATGGTGACTGTTGAACAC
TTAACAGGAGAGGCTAACCCCCTTGAGAAGCAAGTTGGAGATAGTGTTCCTGGTGGTGCAAGAAACTTGGATGGAATGTTGATAATCAAGGCAACAAAGACATGGAAGGATTCAACGTTGTCCAAGATTATGCATTTGACTAAAGAAGCACAACTTAACAGACCAAAATTACAGAGATGGCTTGATGAATTTGGAGAACG
TTACAGCCAGGCTGTTGTGGTGGCATCAGCTGTAGTGGCTCTTTTTGGGCCATTTGTATTCAAGTGGCCATTTCTAAGTACTCCAGGAGCCCGAGGATCTATTTACAGGGCATTGTGCCTCATGGTAGCAGCTTCACCATGTGCATTAGCAGTGGCTCCTCTAGCTTATGCAACTGCAATTAGTGCCTGTGCAAGTAAGG
GTATCCTGTTAAAAGGTGGACATGCATTGGATGCACTTGCATCTTGTGATACTATTGCGTTTGACAAAACTGGAACTTTAACGACAGGGGGACTTGTCTGCAAGGGAATTGAACCAATCCATGGACATAGTTTAACTGGATGGAAGGACAAGAATGTTAATGCTTGCTGCAATCCAAGCTGTGAAAAGGAAGCTCTTGCA
GTGGCATCCGCCATGGAAAAAGGAACCACACATCCCATTGCAAGAGCAGTTGCGGATCACAGCCTTGGGAAAGAACTTCCTCCTGTTTCAATTGAGCATTTTGAATCACTACCAGGAAAAGGTCTGGTTGCTACATTGACTGGCATACAGTCAGGAGATGGCGTTCCTCTAAAGGCCACACTTGGTTCGCTGGAGTATAT
TGCATCTTTATTTAGAAATGAGTTTGAATCAAGGCAAATAAAAGAGGCAGCAAGTGCATCTCCTTATGGTCAAGATCTGGTGCATGCAGTACTATCTGTAAACAATAAGGTAACTCTTTTTCACTTCGAGGATAAAATTCGACCTGGAGCTACAGATGTTGTGTCCACATTAAAAAATCAAGCCAGCCTTCGTTTGATGA
TGTTGACAGGCGATCATGCATCAAGTGCATCGCGGATTGCTAAGGCTGTTGGTATTGATGAGGTCCATTCTGGTCTTAAGCCTGAGGATAAGCTCCATCGAGTAAAAGCTCTTTCACGCAATGGAGCTGGGGGTTTAATTATGGTGGGTGATGGAATAAATGATGCACCAGCATTGGCTGCTGCAACTGTAGGGATTGTT
CTTGCACAACGTGCAAGTGCAACAGCAGTAGCTGTAGCAGATGTTCTTCTTCTAGAGGATAATATTAAAAGGGTACCTTTCGTTATTGCAAAAGCCCGTCAAACAACTTCCTTGGTAAAGCAAAGCGTGCTGCTTGCATTATCGTGTATCTTTTTCGCTGCTCTTCCATCGGTGATGGGATTTCTGCCTCTCTGGCTGAC
GGTTCTGCTGCATGAAGGTGGAACACTTCTAGTCTGTGTCAATTCTGCCCGTGCACTGAACGATCCTACTTGGTCATGGACCCATGATTTAAGAAGAGTAGTGGATGATTCAGTGGCATCAATATCCAAAATCTTGAAGCAGTTCTCTTCCAATAATGTTCAAGCAGCGCCGTCATAAATGCTAACTAGTCTTTGTTTTA
TTTTCATTATTTTTTCGATCTTATTCCTAATTTATTTGTATTTCTAGTTGGAGTACACCATTTGTCCGAGGGCTATTATGTTCAATTTAGAGAATTAAGTATTGTAATAACTTTTTTGAACACAATTCTGTAGCTATGTATTTGGGATTGCGTTGCATCTGATAATTTTTCAACTAATGATCGCATATTTTCAGGTCCGG
TTGTTGTCTTCATAGTAACCAAGAGAATAACCAACAGAACTGATGGTGTCAATATTCGATACTGATTGTGTTATTGTAATTTTAGTGCTTTGGCAATCAAGCCTAAAAATTGGATTTAACAAAACAGTGATACACCTTGGAAGATAAATACAAAGGTGATATCAGGGAAGCCTGCCCCATCAAACCATACATTTCCTGAC
TTCAAAATATGAATATTTTCAAGCTATATTACTTAAATGTACAGCATATGACTAAGCAGCTTCAAAACATACATTTGTTACAAAAAATGAGCATATCTGCGCTGTTTGATTCCTCTTTTATATTGCAGTATATTTCTGTATTAATGGGGCTATCATTGGAGCTTTAATCCTTATGGCAAGAGTGACTGCTCGTATGTGTT
AAGAAATCTGATGTATTGTAAGTTGTAACAAATCCACTTTATTGGCAA