sp|Q94K73|SYFM_ARATH ----> Phenylalanine--tRNA ligase, chloroplastic/mitochondrial
Intron 1 GTATTGCATG ... TGGAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.12 | 46 | 13 | 6 |
| A2 | 20.83 | 38 | 12 | 8 |
| A3 | 11.32 | 47 | 7 | 5 |
| A4 | 21.1 | 43 | 11 | 12 |
| A5 | 16.77 | 22.3 | 6 | 3 |
| A6 | 13.94 | 179 | 26 | 32 |
| A7 | 12.98 | 171 | 31 | 20 |
| A8 | 15.25 | 216.7 | 34 | 44 |
| A9 | 17.44 | 184.7 | 47 | 31 |
| A10 | 19.19 | 139 | 45 | 21 |
>TRINITY_DN32208_c0_g1_i1 from sample A6 / Example spliced isoformCGCATTTTTCTTTATTTAGCCAAATCAGTCGAGGGCATATCTCGGCCGACGCTAAACTTAGGGTCGAGGGAACAACCGATCAAAGCGCTCTCTGAGGTGAGGGCTATTATGCTCTTGCTGGCTCTTGCCTTCTGGTGTATAGTGAATCCGCGTTCTTGTGTCGATCCACCAAGCCGCAGGGAAGGAATCAGCGTGGTGGT
GTCTGCGTGCTATTGAATACAATCGAAATTGGGAAACCCTTCTTAGAATCAATCCGAATTTCTTCTGCCGGACTTAAACGAATATTTTTTTTTTGTAAAATTCGCCGAATCCTGTGACTGTGACTTAGGTGTGTAGAGTGTGGGCTGGGACATGGCGAATATTGGCAGGCAGGTTCCTTCTATAATTCTCATTACGCAAT
GCAAAACTAGACTCAGTCATGCAGTAACCTCTTTCTCTTCACCTCCGCCGCCTCCTGTCTTTCATTCTCGAAGTTTATCCATTTTTTCCGTCAAAAGAACAGGCATTCGCAGAGCAGCGACTGTGGGTTTAGGGTTTAATAGATGGGTTTCTACCGTGCCAATTTCTTCAAAAAGGACCCGCAAAAGGACTGGAGAAATC
TTATCGACTTTACTGGAAGTGGGCGGTGTCAAGATCAACAGAGATGATGTAGTGAGGGACAATGATCCAACAAACAATGTGCCAGATTCAATTTTTTCGAAAATAGGGCTGCAGCTTCACAGAAGGGACAATCACCCACTCGGGATCTTGAAGCAGGAGATCTACAATTACTTTGATAACAATTTTCCAGGCTTATTCAA
CAAGTTTGACAATCTTTGCCCCATTGTATCAGTTAAAATGAACTTTGATGATGTATTGGTTCCACATGACCATGTGAGTAGAACCTACAATGATACTTACTATATAAATGCTGAAACTGTGCTACGATGCCATACAAGTGCTCACCAAGCAGAGTTGTTGAGAGATGGGTACTCTTGCTTTCTTGTAACGGGAGATGTTT
ATCGCAGAGATTCTGTAGATTCTACGCATTACCCAGTCTTCCACCAGATGGAAGGTTTGCGTGTTTTTACTCCAGCTGACTGGGAAGCATCTGGTGAAGATGGTACTTCTTATGCAGCGATGGATCTAAAGAAGACTCTTGAGGGGTTAGCCCAACATTTGTTTGGCAAAGTTGAAATGCGGTGGGTGGATGCTTACTTT
CCATTTACCAATCCATCCTTTGAGCTAGAAATTTATTTTCAGATTGTTCACTCAGGGGAATTGGATGGAGGTGTTGGGTTGTGGTGTAACTGAGCAGAAGATACTAATCGATAATGGAAGAGCAGGAAGTACTGCATGGGCCTTTGGACTTGGGCTTGAAAGACTTGCAATGGTCCTTTTTGATATTCCAGATATTCGTC
TTTTCTGGTCCAGTGATCCACGTTTTACCTCTCAATTCTCCAGTGGACAGCTTGGTCTCAAGTTTAAGCCTTTTTCAAAGTTCCCTCCTTGTTACAAGGATATAAGTTTTTGGATCAGTGAATCATTTACTGAAAACAATTTCTGTGAAGTTGTGCGTGGCGTTGCTGGGGATCTCGCAGAGCAGGTATCTTTGATTGAT
AATTTTACAAATAAGAAGGGATTGACCAGTCACTGTTACAGAATTACGTATCGTTCCATGGAGCGTTCTCTTACTGATGAAGAGATTAACCAATTACAGGGTCGTGTCAGAGATGAAGTGGAAAACAAGTTGCATGTGACCATTAGATAACTCTGGTTTATTGTCTTTGTAATCTATTTGAGATTTTCTGCTATCCCATT
TGCACATGTTGATACATTTCTTTGTGACAAACAAATTTTATTGGGATCTTTTGATGTTTAATTAAATGAGCTTAAACAGGAGATTGTTCTCCCTATGAAGTAGCTAGATTCTTTCGGCTGGACAATAAGATTACAAGGCATTATATTTACTTCAGTGTTACCTTAAGTTGAAAGGAGACCTGAATTCATATTTCTGAGTG
AGAGGTTTTGCCTTGGTACTGCGGCATCTGCAGCACAGAGTCTGTATGCCAAAAGGATGCTATCATATGTAGTGGAATGCCTGCTTCAACCAATGTTTATTGCAATTTTCATGAAAATAAATTAACACGTGACTATTTTATGCTAAAATCTGTCCTACCAATGAACTGGCATCAATGGAACCTAAACCGTTTCAATGCAT
TGATTTGATAATTTTTAAGGTGATCA
>TRINITY_DN32208_c0_g1_i2 from sample A6 / Example unspliced isoform:GTTACATCGGACTGTTGGATCTTTGAACTTCTGTAACTTTTATCTTGTGTTTTTTCTCTTTTTTGGAAACAAATTTCATGGTTGCTTGATCTGTGACTAACACTAACTAGTATTGCTAACAGTTTAAATCCATCTAGAAAATATTGATGTTTTTTTCATTCATCTTCAAGAACAATGACCCAAAGCCATAGCTGATTTAA
AGAGTGCCATATTTGCAGTTCTCCAGTGGACAGCTTGGTCTCAAGTTTAAGCCTTTTTCAAAGTTCCCTCCTTGTTACAAGGATATAAGTTTTTGGATCAGTGAATCATTTACTGAAAACAATTTCTGTGAAGTTGTGCGTGGCGTTGCTGGGGATCTCGCAGAGCAGGTATCTTTGATTGATAATTTTACAAATAAGAA
GGGATTGACCAGTCACTGTTACAGAATTACGTATCGTTCCATGGAGCGTTCTCTTACTGATGAAGAGATTAACCAATTACAGgtattgcatgcttattcttgtaaaaatataagaaagtgattggaccatggaaacatttgaatttgtgacactctaatggtgctctgtggagtgcagGGTCGTGTCAGAGATGAAGTGG
AAAACAAGTTGCATGTGACCATTAGATAACTCTGGTTTATTGTCTTTGTAATCTATTTGAGATTTTCTGCTATCCCATTTGCACATGTTGATACATTTCTTTGTGACAAACAAATTTTATTGGGATCTTTTGATGTTTAATTAAATGAGCTTAAACAGGAGATTGTTCTCCCTATGAAGTAGCTAGATTCTTTCGGCTGG
ACAATAAGATTACAAGGCATTATATTTACTTCAGTGTTACCTTAAGTTGAAAGGAGACCTGAATTCATATTTCTGAGTGAGAGGTTTTGCCTTGGTACTGCGGCATCTGCAGCACAGAGTCTGTATGCCAAAAGGATGCTATCATATGTAGTGGAATGCCTGCTTCAACCAATGTTTATTGCAATTTTCATGAAAATAAA
TTAACACGTGACTATTTTATGCTAAAATCTGTCCTACCAATGAACTGGCATCAATGGAACCTAAACCGTTTCAATGCATTGATTTGATAATTTTTAAGGTGATCA
Intron 2 GTGAGTAGAA ... TTTATCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65.36 | 31 | 71 | 46 |
| A2 | 61.74 | 22 | 29 | 42 |
| A3 | 63.73 | 37 | 96 | 34 |
| A4 | 62.71 | 22 | 40 | 34 |
| A5 | 66.1 | 20 | 42 | 36 |
| A6 | 58.91 | 68 | 104 | 91 |
| A7 | 57.25 | 112 | 158 | 142 |
| A8 | 54.74 | 62 | 82 | 68 |
| A9 | 60.6 | 92 | 178 | 105 |
| A10 | 52.74 | 99 | 123 | 98 |
>TRINITY_DN103800_c0_g1_i1 from sample A2 / Example spliced isoformAAAAGAAACACGCAGGTGAGAAACGCATTTTTCTTTATTTAGCCAAATCAGTCGAGGGCATATCTCGGCCGACGCTAAACTTAGGGTCGAGGGAACAACCGATCAAAGCGCTCTCTGAGGTGAGGGCTATTATGCTCTTGCTGGCTCTTGCCTTCTGGTGTATAGTGAATCCGCGTTCTTGTGTCGATCCACCAAGCCGC
AGGGAAGGAATCAGCGTGGTGGTGTCTGCGTGCTATTGAATACAATCGAAATTGGGAAACCCTTCTTAGAATCAATCCGAATTTCTTCTGCCGGACTTAAACGAATATTTTTTTTTTGTAAAATTCGCCGAATCCTGTGACTGTGACTTAGGTGTGTAGAGTGTGGGCTGGGACATGGCGAATATTGGCAGGCAGGTTCC
TTCTATAATTCTCATTACGCAATGCAAAACTAGACTCAGTCATGCAGTAACCTCTTTCTCTTCACCTCCGCCGCCTCCTGTCTTTCATTCTCGAAGTTTATCCATTTTTTCCGTCAAAAGAACAGGCATTCGCAGAGCAGCGACTGTGGGTTTAGGGTTTAATAGATGGGTTTCTACCGTGCCAATTTCTTCAAAAAGGA
CCCGCAAAAGGACTGGAGAAATCTTATCGACTTTACTGGAAGTGGGCGGTGTCAAGATCAACAGAGATGATGTAGTGAGGGACAATGATCCAACAAACAATGTGCCAGATTCAATTTTTTCGAAAATAGGGCTGCAGCTTCACAGAAGGGACAATCACCCACTCGGGATCTTGAAGCAGGAGATCTACAATTACTTTGAT
AACAATTTTCCAGGCTTATTCAACAAGTTTGACAATCTTTGCCCCATTGTATCAGTTAAAATGAACTTTGATGATGTATTGGTTCCACATGACCATAGATTCTGTAGATTCTACGCATTACCCAGTCTTCCACCAGATGGAAGGTTTGCGTGTTTTTACTCCAGCTGACTGGGAAGCATCTGGTGAAGATGGTACTTCTT
ATGCAGCGATGGATCTAAAGAAGACTCTTGAGGGGTTAGCCCAACATTTGTTTGGCAAAGTTGAAATGCGGTGGGTGGATGCTTACTTTCCATTTACCAATCCATCCTTTGAGCTAGAAATTTATTTTCAG
>TRINITY_DN103800_c0_g1_i3 from sample A2 / Example unspliced isoform:AAAAGAAACACGCAGGTGAGAAACGCATTTTTCTTTATTTAGCCAAATCAGTCGAGGGCATATCTCGGCCGACGCTAAACTTAGGGTCGAGGGAACAACCGATCAAAGCGCTCTCTGAGGTGAGGGCTATTATGCTCTTGCTGGCTCTTGCCTTCTGGTGTATAGTGAATCCGCGTTCTTGTGTCGATCCACCAAGCCGC
AGGGAAGGAATCAGCGTGGTGGTGTCTGCGTGCTATTGAATACAATCGAAATTGGGAAACCCTTCTTAGAATCAATCCGAATTTCTTCTGCCGGACTTAAACGAATATTTTTTTTTTGTAAAATTCGCCGAATCCTGTGACTGTGACTTAGGTGTGTAGAGTGTGGGCTGGGACATGGCGAATATTGGCAGGCAGGTTCC
TTCTATAATTCTCATTACGCAATGCAAAACTAGACTCAGTCATGCAGTAACCTCTTTCTCTTCACCTCCGCCGCCTCCTGTCTTTCATTCTCGAAGTTTATCCATTTTTTCCGTCAAAAGAACAGGCATTCGCAGAGCAGCGACTGTGGGTTTAGGGTTTAATAGATGGGTTTCTACCGTGCCAATTTCTTCAAAAAGGA
CCCGCAAAAGGACTGGAGAAATCTTATCGACTTTACTGGAAGTGGGCGGTGTCAAGATCAACAGAGATGATGTAGTGAGGGACAATGATCCAACAAACAATGTGCCAGATTCAATTTTTTCGAAAATAGGGCTGCAGCTTCACAGAAGGGACAATCACCCACTCGGGATCTTGAAGCAGGAGATCTACAATTACTTTGAT
AACAATTTTCCAGGCTTATTCAACAAGTTTGACAATCTTTGCCCCATTGTATCAGTTAAAATGAACTTTGATGATGTATTGGTTCCACATGACCATgtgagtagaacctacaatgatacttactatataaatgctgaaactgtgctacgatgccatacaagtgctcaccaagcagagttgttgagagatgggtactcttg
ctttcttgtaacgggagatgtttatcgcagAGATTCTGTAGATTCTACGCATTACCCAGTCTTCCACCAGATGGAAGGTTTGCGTGTTTTTACTCCAGCTGACTGGGAAGCATCTGGTGAAGATGGTACTTCTTATGCAGCGATGGATCTAAAGAAGACTCTTGAGGGGTTAGCCCAACATTTGTTTGGCAAAGTTGAAA
TGCGGTGGGTGGATGCTTACTTTCCATTTACCAATCCATCCTTTGAGCTAGAAATTTATTTTCAGGGGAATTGGATGGAGGTGTTGGGTTGTGGTGTAACTGAGCAGAAGATACTAATCGATAATGGAAGAGCAGGAAGTACTGCATGGGCCTTTGGACTTGGGCTTGAAAGACTTGCAATGGTCCTTTTTGATATTCCA
GATATTCGTCTTTTCTGGTCCAGTGATCCACGTTTTACCTCTCAAGTAAATATTGAAGTTTGAAGCTTTACTTGCTTCCATTTTCATTAGTATTATGTATCATAAAGGAAATAAAATTTATTAACTGCAATAAAAATTAAATGCAGATTTCACAATTTTGGTTGTTGCTGATATGGTAGGCATTATTCTTGTCACAAACT
TATGTATATCATTAACTGTTAGGGTGAAAAAGGCAGCAAACCTTTCTAGATCGTCT