sp|Q501B2|BZP16_ARATH ----> bZIP transcription factor 16
Intron 1 GTAATTATTT ... TGAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 90 | 1 | 9 | 3 |
| A2 | 78.57 | 3 | 11 | 3 |
| A3 | 50 | 5 | 5 | 9 |
| A4 | 100 | 0 | 13 | 5 |
| A5 | 75 | 1 | 3 | 1 |
| A6 | 100 | 0 | 2 | 0 |
| A7 | 100 | 0 | 14 | 0 |
| A8 | 100 | 0 | 13 | 0 |
| A9 | 100 | 0 | 13 | 3 |
| A10 | 100 | 0 | 9 | 0 |
>TRINITY_DN114066_c1_g2_i6 from sample A3 / Example spliced isoformCACATCCTTCCATGCCTCCGGAATTGAAGTTATATCATTCTCTCTTATATTTTGGGTTGTGCAAAAAACCATGAGTCTGTGAGCTTGGGTGCATACAGCCACTCTTTCCCAATCCAATTATCCACCGACAACCTTATTGGTTATCTGTATATACCGTGGTCATATTCTTAGTTTTATAGGTGCAGTTGTGCAATTTATGG
CATTATTTCAAAAATTGCTGTCACTACAGGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGC
AAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAG
>TRINITY_DN114066_c1_g2_i9 from sample A3 / Example unspliced isoform:AGCAGTTTTGCCCCTCTGGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCC
CAACTCCCCCAAATTTTAACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCAT
TCTCACACCCAGTTGTTCATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGAT
TTCTCTTCTGTCCAACACCCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTT
TAAGCTGGTATGATATGGCGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTG
ATTGGGCAGCAGCTTTCCAGGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCT
CCGgtaattatttctttcctgaattacttttcccctcttaccttttttttttctttttttcttttatatcttaattatattgaaatgcagGAATTGAAGTTATATCATTCTCTCTTATATTTTGGGTTGTGCAAAAAACCATGAGTCTGTGAGCTTGGGTGCATACAGCCACTCTTTCCCAATCCAATTATCCACCGACA
ACCTTATTGGTTATCTGTATATACCGTGGTCATATTCTTAGTTTTATAGGTGCAGTTGTGCAATTTATGGCATTATTTCAAAAATTGCTGTCACTACAGGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTC
AGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAG
Intron 2 GTTTGCAATG ... TGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.42 | 62 | 16 | 12 |
| A2 | 26.15 | 48 | 20 | 14 |
| A3 | 24.42 | 65 | 26 | 16 |
| A4 | 26.96 | 42 | 17 | 14 |
| A5 | 17.46 | 26 | 10 | 1 |
| A6 | 16.83 | 42 | 10 | 7 |
| A7 | 20 | 94 | 19 | 28 |
| A8 | 21.05 | 45 | 11 | 13 |
| A9 | 21.7 | 83 | 23 | 23 |
| A10 | 20.79 | 80 | 26 | 16 |
>TRINITY_DN114066_c1_g2_i4 from sample A3 / Example spliced isoformAGCAGTTTTGCCCCTCTGGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCC
CAACTCCCCCAAATTTTAACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCAT
TCTCACACCCAGTTGTTCATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGAT
TTCTCTTCTGTCCAACACCCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTT
TAAGCTGGTATGATATGGCGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTG
ATTGGGCAGCAGCTTTCCAGGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCT
CCGGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAAC
ATCAGGATCTGCAAATGAGGCCATGTCACAGAGTGGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATG
TGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATA
GTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAATCTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGC
ACTTAGAAATGAACTTAACCGGATGGCTGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATGACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCA
ATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGGTTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTT
TTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACATTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCT
CAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACAACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTGTGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAACTTTGAAGGATGACTTTGTTATTATTAAATAATCCTCAATGTATTGTCATATGC
AAAACAAAGTTTTTTGCCTCAGTTGATTAAAATGGTGAGTTTTGCAGTTGTAGATTAAAGTAGCATTGTTCGACATTGGATTTGAATATCATATGCATTTGATTTTGCAATTGGGATAAACTTGATCCGCAGGACCTTAGAAATTTCTCACATGCTATAATAGCTGCATGGTGCATTAAAATGTTTGTCTGCAGTGTGAA
ATATTGTACACGTTATATTCTTGAATTCATTTGTGATGCTATTATGGGCTTGATAAATATTCGTGTGAAATGTGCAAAATAAAATCAATTTGCTATCTCTGAAGTTTGTGCCA
>TRINITY_DN114066_c1_g2_i5 from sample A3 / Example unspliced isoform:CTGGTATGATATGGCGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTGATTG
GGCAGCAGCTTTCCAGgtttgcaatgatttatccttactatttgtatgagctgatagaaaatggatgcaatacacaagtcatctaagctgtgcctgtttttcagGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAG
CATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCTCCGGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGA
ACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAGAGTGGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAA
GTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATGTGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGT
ATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATAGTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAATCTAACAGGGAGTC
AGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCTGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATGACCACTACTGCTG
AAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGGTTAAAATATACCT
CTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACATTAGAAGAGTGGG
TTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACAACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTGTGCAAAGATAAAC
TTTTGTTATTTGATACTCCACAAAGGGTAACTTTGAAGGATGACTTTGTTATTATTAAATAATCCTCAATGTATTGTCATATGCAAAACAAAGTTTTTTGCCTCAGTTGATTAAAATGGTGAGTTTTGCAGTTGTAGATTAAAGTAGCATTGTTCGACATTGGATTTGAATATCATATGCATTTGATTTTGCAATTGGGA
TAAACTTGATCCGCAGGACCTTAGAAATTTCTCACATGCTATAATAGCTGCATGGTGCATTAAAATGTTTGTCTGCAGTGTGAAATATTGTACACGTTATATTCTTGAATTCATTTGTGATGCTATTATGGGCTTGATAAATATTCGTGTGAAATGTGCAAAATAAAATCAATTTGCTATCTCTGAAGTTTGTGCCA
Intron 3 GTAACTACAC ... ATGAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.95 | 53.3 | 5 | 25 |
| A2 | 33.33 | 42 | 3 | 21 |
| A3 | 34.88 | 56 | 9 | 30 |
| A4 | 21.05 | 15 | 3 | 4 |
| A5 | 38.24 | 21 | 5 | 13 |
| A6 | 32.99 | 65 | 4 | 32 |
| A7 | 29.3 | 111 | 7 | 46 |
| A8 | 28.87 | 69 | 3 | 28 |
| A9 | 32.81 | 86 | 6 | 42 |
| A10 | 28.14 | 120 | 6 | 47 |
>TRINITY_DN107040_c1_g1_i4 from sample A5 / Example spliced isoformGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCCCAACTCCCCCAAATTTTA
ACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCATTCTCACACCCAGTTGTTC
ATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGATTTCTCTTCTGTCCAACAC
CCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTTTAAGCTGGTATGATATGG
CGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTGATTGGGCAGCAGCTTTCC
AGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCTCCGGGTGCACTTCCGTATGGTCACTATGGAATGC
CATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAGAGT
GGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATGTGAATTCCAGTGGGCATGCAATGGGTAATCCCAT
TAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATAGTTCCAACAACTGCTCAACTTATGCCACCTGGCC
GTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAATCTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCCGAGGAA
TGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATGACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCA
GAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGGTTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAA
TCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACATTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAG
GAGACGACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTGTGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAAC
>TRINITY_DN107040_c1_g1_i6 from sample A5 / Example unspliced isoform:GATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCCCAACTCCCCCAAATTTTA
ACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCATTCTCACACCCAGTTGTTC
ATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGATTTCTCTTCTGTCCAACAC
CCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTTTAAGCTGGTATGATATGG
CGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTGATTGGGCAGCAGCTTTCC
AGGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCTCCGGGTGCACTTCCGTAT
GGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGgtaactacactacctgttctagacagtgagtattttatgagttgtctagagtatgctgccattgacttctccatctgttgaagagtttgaactgtaatcttttctctcaatgaatacagACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAG
TCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAGAGTGGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACA
AGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATGTGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCA
CTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATAGTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAG
CAATCTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCCGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGA
TATGACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATA
CAGGTTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATA
AACATTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACGACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATC
TGTGTGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAAC
Intron 4 GTTTATATCT ... TGATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.13 | 123 | 36 | 26 |
| A2 | 17.06 | 124 | 23 | 28 |
| A3 | 25.81 | 92 | 33 | 31 |
| A4 | 18.37 | 40 | 10 | 8 |
| A5 | 17.91 | 55 | 12 | 12 |
| A6 | 17.13 | 179 | 32 | 42 |
| A7 | 17.46 | 338 | 62 | 81 |
| A8 | 17.53 | 320 | 62 | 74 |
| A9 | 17.95 | 361 | 59 | 99 |
| A10 | 15.99 | 289 | 55 | 55 |
>TRINITY_DN114066_c1_g2_i2 from sample A3 / Example spliced isoformGCCGGAATCTGCAAAAATGCAGTGTATCACTTGTAATATTTATCTAATTTAACCATTGGTCACAGTGGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTC
AGCATATAATACTCAAGCTGGAGAACCGTATGTGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAA
GGGGTAGTACAGCTGGTATTCCAACAGCAATAGTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAATCTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACA
AAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCTGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATGACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAA
TGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGGTTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATG
CTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACATTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGA
GTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACAACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTGTGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAACTTTGAAGGATGACTTTGTTAT
TATTAAATAATCCTCAATGTATTGTCATATGCAAAACAAAGTTTTTTGCCTCAGTTGATTAAAATGGTGAGTTTTGCAGTTGTAGATTAAAGTAGCATTGTTCGACATTGGATTTGAATATCATATGCATTTGATTTTGCAATTGGGATAAACTTGATCCGCAGGACCTTAGAAATTTCTCACATGCTATAATAGCTGCA
TGGTGCATTAAAATGTTTGTCTGCAGTGTGAAATATTGTACACGTTATATTCTTGAATTCATTTGTGATGCTATTATGGGCTTGATAAATATTCGTGTGAAATGTGCAAAATAAAATCAATTTGCTATCTCTGAAGTTTGTGCCA
>TRINITY_DN114066_c1_g2_i7 from sample A3 / Example unspliced isoform:AGCAGTTTTGCCCCTCTGGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCC
CAACTCCCCCAAATTTTAACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCAT
TCTCACACCCAGTTGTTCATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGAT
TTCTCTTCTGTCCAACACCCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTT
TAAGCTGGTATGATATGGCGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTG
ATTGGGCAGCAGCTTTCCAGGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCT
CCGGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAAC
ATCAGGATCTGCAAATGAGGCCATGTCACAGAGTGGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATG
TGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATA
GTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGgtttatatctaacattatggtccacctatttgaaaaatattgtgacctaagttatttctgtaacaaaatttgtatgcctaagtaagatgatttacagGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAAT
CTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCTGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATG
ACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGG
TTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACA
TTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACAACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTG
TGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAACTTTGAAGGATGACTTTGTTATTATTAAATAATCCTCAATGTATTGTCATATGCAAAACAAAGTTTTTTGCCTCAGTTGATTAAAATGGTGAGTTTTGCAGTTGTAGATTAAAGTAGCATTGTTCGACATTGGATTTGAATATCATATGCATTTGAT
TTTGCAATTGGGATAAACTTGATCCGCAGGACCTTAGAAATTTCTCACATGCTATAATAGCTGCATGGTGCATTAAAATGTTTGTCTGCAGTGTGAAATATTGTACACGTTATATTCTTGAATTCATTTGTGATGCTATTATGGGCTTGATAAATATTCGTGTGAAATGTGCAAAATAAAATCAATTTGCTATCTCTGAA
GTTTGTGCCA
Intron 5 GTAATTATTT ... GTCACTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.52 | 34.7 | 9 | 10 |
| A2 | 25.71 | 26 | 11 | 7 |
| A3 | 25.33 | 28 | 5 | 14 |
| A4 | 40.43 | 14 | 13 | 6 |
| A5 | 20 | 12 | 3 | 3 |
| A6 | 18.07 | 34 | 2 | 13 |
| A7 | 23.6 | 68 | 14 | 28 |
| A8 | 21.5 | 42 | 13 | 10 |
| A9 | 24.07 | 41 | 13 | 13 |
| A10 | 18.29 | 67 | 9 | 21 |
>TRINITY_DN114066_c1_g2_i7 from sample A3 / Example spliced isoformAGCAGTTTTGCCCCTCTGGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCC
CAACTCCCCCAAATTTTAACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCAT
TCTCACACCCAGTTGTTCATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGAT
TTCTCTTCTGTCCAACACCCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTT
TAAGCTGGTATGATATGGCGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTG
ATTGGGCAGCAGCTTTCCAGGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCT
CCGGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAAC
ATCAGGATCTGCAAATGAGGCCATGTCACAGAGTGGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATG
TGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATA
GTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGGTTTATATCTAACATTATGGTCCACCTATTTGAAAAATATTGTGACCTAAGTTATTTCTGTAACAAAATTTGTATGCCTAAGTAAGATGATTTACAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAAT
CTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCTGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATG
ACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGG
TTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACA
TTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACAACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTG
TGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAACTTTGAAGGATGACTTTGTTATTATTAAATAATCCTCAATGTATTGTCATATGCAAAACAAAGTTTTTTGCCTCAGTTGATTAAAATGGTGAGTTTTGCAGTTGTAGATTAAAGTAGCATTGTTCGACATTGGATTTGAATATCATATGCATTTGAT
TTTGCAATTGGGATAAACTTGATCCGCAGGACCTTAGAAATTTCTCACATGCTATAATAGCTGCATGGTGCATTAAAATGTTTGTCTGCAGTGTGAAATATTGTACACGTTATATTCTTGAATTCATTTGTGATGCTATTATGGGCTTGATAAATATTCGTGTGAAATGTGCAAAATAAAATCAATTTGCTATCTCTGAA
GTTTGTGCCA
>TRINITY_DN114066_c1_g2_i9 from sample A3 / Example unspliced isoform:AGCAGTTTTGCCCCTCTGGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCC
CAACTCCCCCAAATTTTAACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCAT
TCTCACACCCAGTTGTTCATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGAT
TTCTCTTCTGTCCAACACCCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTT
TAAGCTGGTATGATATGGCGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTG
ATTGGGCAGCAGCTTTCCAGGCATATTATGGTCCAGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCT
CCGgtaattatttctttcctgaattacttttcccctcttaccttttttttttctttttttcttttatatcttaattatattgaaatgcaggaattgaagttatatcattctctcttatattttgggttgtgcaaaaaaccatgagtctgtgagcttgggtgcatacagccactctttcccaatccaattatccaccgaca
accttattggttatctgtatataccgtggtcatattcttagttttataggtgcagttgtgcaatttatggcattatttcaaaaattgctgtcactacagGGTGCACTTCCGTATGGTCACTATGGAATGCCATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTC
AGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAG
Intron 6 GTATGTTTTT ... GCAATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.56 | 153.6 | 1 | 50 |
| A2 | 21.05 | 120 | 10 | 32 |
| A3 | 10.56 | 127 | 0 | 15 |
| A4 | 13.79 | 75 | 1 | 12 |
| A5 | 26.92 | 38 | 3 | 14 |
| A6 | 17.3 | 191.2 | 0 | 40 |
| A7 | 19.81 | 433 | 2 | 107 |
| A8 | 19.63 | 323.4 | 1 | 79 |
| A9 | 19.28 | 360 | 0 | 86 |
| A10 | 19.86 | 355 | 0 | 88 |
>TRINITY_DN107040_c1_g1_i4 from sample A5 / Example spliced isoformGATTTCTTCTGTGGCGATCAAGAAACCAAGAAAGTGGGTCGGTAGAAGCCGCGAATGGGTATCAGGAAATATAATTTTAAGAAGTGATTGGGTATTGTGACCTGGAGATTCCGCGTATTTGTCATTTGATGTAAAGCGCTCTTTCGCTCTGCAAACGTGGGCATTGCTTGCATTAGAGTGCCCAACTCCCCCAAATTTTA
ACAAGATTTTTTGCTCTTAAAATTCCTCCATACCACTATCCCGCTCCCCTTCCTAAGCTGCCCCCATAGGTCCCCTTATTTGGGCTTCTGTGCTGAGTGTTCTGGGTTTTCATTTTCAGCGATTTCTGCATCTTCTGCTGCTTAGTCATCTCTCTGGCTTACTCAGCGACCCACCTGAGCATTCTCACACCCAGTTGTTC
ATTCGTTCAAATCCTTCAATTCCACCAGACAGAGAGAACCCCTTTGTTGCTTCATTTATTCATTTACTGTATGGTTGATTCCTCCTACTCCAACTGCCTTGGGTGTGACAAACACTTGTGATTGGCTCCTAGGATTGTGGGGCTCTGTCAAATTGTGAGTTTGAGGGGCAACACATCTGGATTTCTCTTCTGTCCAACAC
CCACAACTCTCCAGTTCACAGATCTCATAAAACTTACCTTGTTCTAACGCTGCAGGGCAATAACCCTCTTCGTCTCCTGTTCTGTAGTTTTTACTTTTTTTTGCCTCAGACCAGGCTCAACAAGCGTGTACAGATTCTTCAAGGACTAACTGCAAATGAAGGATTTTAACTGCAGCTTATTTTAAGCTGGTATGATATGG
CGAGCTTCCAGTGAAAACACACGAGCATAATTTGTGCTTCTCTTGGTTATCCCGAGTCCAAGCTTGAATTCACGTTTATTTTTTATAAACGATGGGAACTGGGGAAGAAGGAACACCAACAAAGCCTCCTGCCAAACCATCTTCCTCCTCCCAGGAGACGCCAACGACGCCTGTTTATCCTGATTGGGCAGCAGCTTTCC
AGGTGCTACCCCACCTCCTGCCTTTTTCGCTTCAACAGTGGGATCTGCACCAACACCACATCCATACATGTGGGGAGGACAGCATTTGATGCCGCCTTATGGGACTCCATTACCATACCCTGCTATGTATCCACATGGGGGAATCTATGCACATCCTTCCATGCCTCCGGGTGCACTTCCGTATGGTCACTATGGAATGC
CATCACCTGGCAATGCCGAAGTTACAACGACTCTAGCACTTCCAAATGCTGAAACAGAAGCCAAGTCCTCAGAAGGCAAAGAACGGAATACAATGAAGAGATCAAAAGGAAGTTTAGGAAGCCTTGGAATGATTACTGGCAAAGGAGGAGAAGGTGGGAAGGCAACATCAGGATCTGCAAATGAGGCCATGTCACAGAGT
GGAGACAGTGGCAGCGATGGTTCAAGTGAAGGAAGTGAGGAAGATAACGCTCAAAATGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATGTGAATTCCAGTGGGCATGCAATGGGTAATCCCAT
TAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAATACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATAGTTCCAACAACTGCTCAACTTATGCCACCTGGCC
GTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAATCTAACAGGGAGTCAGCCAGACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCCGAGGAA
TGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATGACCACTACTGCTGAAGAAAATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCA
GAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGGTTAAAATATACCTCTAATGCATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAA
TCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACATTAGAAGAGTGGGTTCAGCCATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAG
GAGACGACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTGTGCAAAGATAAACTTTTGTTATTTGATACTCCACAAAGGGTAAC
>TRINITY_DN107040_c1_g1_i12 from sample A5 / Example unspliced isoform:CTTGTGAGTGTTATTTTTAACTGATTTTATCATGTTTTCTGAACATTTTTCAGGAGTCACAAGTTGCGAGAAAGAGAAGTTTTGATCAAATGATAGTAGATGgtatgttttttttaaaactataaatatcttctatttcccatccttgagcccttatttgaacacattattgaatttcaaatggaaccaagtattattta
ttttattggcaatggcagGAGCAAATGCTCAGGGCACCAATATTTCAGCATATAATACTCAAGCTGGAGAACCGTATGTGAATTCCAGTGGGCATGCAATGGGTAATCCCATTAGTCAAGCTGTTGCAGTTCCACTTGGTTCAGTGACAGGAAAGCCAGCAGCCAGTGGGCCTATCACTAATTTGAATATTGGTATGGAA
TACTGGAATGCTTCTGCACCTGGGGCTATAACAACTGTAAAAGGAAGGGGTAGTACAGCTGGTATTCCAACAGCAATAGTTCCAACAACTGCTCAACTTATGCCACCTGGCCGTGATGGTGTTACTCCTGAGCTATGGATCCAGGATGAAAGGGAACTGAAGCGACAGAGGCGAAAGCAATCTAACAGGGAGTCAGCCAG
ACGTTCAAGGTTGCGGAAACAGGCAGAGTGTGAAGAACTGGCAACAAAAGTTGAAACCCTGACTGTAGAAAACGTGGCACTTAGAAATGAACTTAACCGGATGGCCGAGGAATGCAAAAAGCTATCTGCAGAGAATACTTCCATAGTGGAACAACTGAAGAAATTGCATGGAGAAGATATGACCACTACTGCTGAAGAAA
ATGGTTCCACTAAGATATCATTGCAGTCGGTAAAACCTGAAGGCAATGGACATTTTCATGATATATCGAGGGGAATCAATTCAAGTTCTACTGAAAGAAGTGAACAAAGGCAGAGTGAGGTCTGTGATTCAAATGGGAAGGTTCATACATTACTAGATGCAAATGCTCGTTCTGATACAGGTTAAAATATACCTCTAATG
CATTTTGATTTAAGTTAGTTGGCAGATGGAAGTTTGGGAGTCCATGCTGTTTTGCTTGTTGTGGGCTTTCTCCAACTTTTCATGCACTAATATAGTGACCAATACTTGTTAATCTAGAAATTTAATTAGGCTGGATTATGACCAAGACCATTTCTGTAAAAAAAGTGACCCACGATAAACATTAGAAGAGTGGGTTCAGC
CATAACTATGATCATATCATTATTTGGTACAGCTAACCTGCTATGAGTAGTTTCTTACTCGGGTCATGTAATTCTTCTCAATGGCCCAATTCAGTTCTAGTTTCTCTCTTAGGAGACGACAGGGTGTCAAAATCATGAACAAAGATGGCATTTTTCGTTTTTGTCCTCGGAACAATCTGTGTGCAAAGATAAACTTTTGT
TATTTGATACTCCACAAAGGGTAAC