sp|O49285|ACR3_ARATH ----> ACT domain-containing protein ACR3
Intron 1 GTATGTACAT ... TCTTGATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.02 | 29.3 | 3 | 0 |
| A2 | 8.11 | 34.7 | 3 | 0 |
| A3 | 5.35 | 54.7 | 3 | 1 |
| A4 | 24 | 31.7 | 10 | 3 |
| A5 | 2.86 | 34.3 | 1 | 0 |
| A6 | 2.39 | 41 | 1 | 0 |
| A7 | 8.45 | 76.3 | 7 | 1 |
| A8 | 9.72 | 19.3 | 2 | 0 |
| A9 | 0 | 57.3 | 0 | 0 |
| A10 | 2.58 | 78 | 2 | 2 |
>TRINITY_DN99044_c0_g1_i4 from sample A4 / Example spliced isoformTGGAAAATTAAAATTCACTAATTTTGTGGCCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCCTGGAATCATTTTATGTGATTTGTGTGGAGAA
TTTAGTTAAGGCGGACAGACGCCCGGCCAGAAAACGAGGGTTTTAAGTTCTACGGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTGCAAAAGATTGCAGGAAAAAAGTTTCGGTTTGTTTCAAGCCTGCATTTACTAGGAGAGGGTTCCCAAGATCAGTGAGAACG
AAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAG
GGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTA
CTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCTGTTCCACAACCGAAGTGAAGACCTG
CTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGC
CCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCT
ATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGA
CACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTAT
TCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTT
GGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAG
>TRINITY_DN99044_c0_g1_i2 from sample A4 / Example unspliced isoform:AGACGCCCGGCCAGAAAACGAGGCTTTTAAGTTCTACGGTGCGTTTATTTATGATTTTTTGGAGGCCTTTCTTTTTTGTGCCTTTTATTTTTCTTTTTTCTGGTTTAAGGCCACCGATCTGTTGCAGGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGgtatgtacat
gcagatccgcggaaaatgaactgtttccatttgctttctgctcgtctttcaactgttatggcggcggaggtgacagctttaacgttttaggaattaagcttggagaaatgaggaaatttgtaaattctggctggtgatttttcttttcgctgtttcttgatggacttattaccggaaaagggtctggtatatcagttttg
tggtatttagagggaaatttgaaggaattgctgaattttaagctctgttttctgttgtcttgattagGTGCAAAAGATTGCAGGAAAAAAGTTTCGGTTTGTTTCAAGCCTGCATTTACTAGGAGAGGGTTCCCAAGATCAGTG
Intron 2 GTAAGCTTTA ... TCTTCAATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.94 | 42 | 9 | 16 |
| A2 | 21.28 | 37 | 3 | 17 |
| A3 | 20.59 | 27 | 2 | 12 |
| A4 | 18.31 | 29 | 10 | 3 |
| A5 | 15.56 | 19 | 5 | 2 |
| A6 | 21.95 | 96 | 19 | 35 |
| A7 | 21.45 | 108 | 23 | 36 |
| A8 | 24.06 | 101 | 21 | 43 |
| A9 | 22.11 | 74 | 9 | 33 |
| A10 | 23.53 | 78 | 18 | 30 |
>TRINITY_DN121371_c0_g1_i10 from sample A1 / Example spliced isoformCCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCCTGGAATCATTTTATGTGATTTGTGTGGAGAATTTAGTTAAGGCGGACAGACGCCCGGCCA
GAAAACGAGGGTTTTAAGTTCTACGGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTGCAAAAGATTGCAGGAAAAAAGTTTCGGTTTGTTTCAAGCCTGCATTTACTAGGAGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTAC
TGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGAAGAAATGCATTAAATATACTCAGTCTTGTTGACAGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAAT
CATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCT
ATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAA
TTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGT
TCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGC
AGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAA
AGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGC
TATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTT
TAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGG
CTTGTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGT
TCTGTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACAACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTATGCTCTGTAAATACAATTCTGTAA
TCG
>TRINITY_DN121371_c0_g1_i15 from sample A1 / Example unspliced isoform:CACGTAACCAAAACGGGATCCACACATTTAGTTCTTTTATCGTTTTCACCTTGTGGGTTTTTTTGGCATGATATTCTTAGAATTTTAAGCCGGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCC
TTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACG
ATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGAT
TACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTG
GACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGT
TTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCC
AGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGAGTATCAGAGgtaagctttaatataacaaaagttgtgttctgtttcttatgtttctgatgattatacggtaaaacttaaactaa
acaaccttcttcaatagGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAA
GCTATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCG
TTTAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGT
GGCTTGTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAA
GTTCTGTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACAACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTATGCTCTGTAAATACAATTCTGT
AATCG
Intron 3 GTATGCATGG ... GACTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.21 | 36 | 15 | 8 |
| A2 | 14.67 | 32 | 8 | 3 |
| A3 | 22.22 | 35 | 16 | 4 |
| A4 | 16.67 | 25 | 3 | 7 |
| A5 | 21.21 | 13 | 7 | 0 |
| A6 | 17.9 | 94 | 20 | 21 |
| A7 | 23.81 | 88 | 27 | 28 |
| A8 | 22.69 | 92 | 24 | 30 |
| A9 | 20.22 | 71 | 21 | 15 |
| A10 | 19.63 | 88 | 24 | 19 |
>TRINITY_DN39301_c0_g1_i1 from sample A8 / Example spliced isoformAGAAAACGAGCCATAAAAAATACGATAGTTTTGGAAAATTAAAATTCACTAATTTTGTGGCCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCC
TGGAATCATTTTATGTGATTTGTGTGGAGAATTTAGTTAAGGCGGACAGACGCCCGGCCAGAAAACGAGGGTTTTAAGTTCTACGGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTGCAAAAGATTGCAGGAAAAAAGTGTCGGTTTGTTTCAAGCCTGCATTTAC
TAGGAGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGAAGAAATGCATTAAATATACTCAGTCTTGTTGACAGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAA
ACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACG
GTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTG
AAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGAC
CTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATG
GAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGT
ACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGT
AAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTT
ATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAA
CAGCGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGGCTTGTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATC
TTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGTTCTGTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACAACACC
TCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTATGCTCTGTAAATACAATTCTGTAATCTATATACTTGTAAATTTGTTCATTTATTTTACTTTTTTTTCTATTGTTACTTCCTTAAACGTGAATCACGCACCCTATAAATAACATTGATGATTGAATGGTGCAAATTATTTCGTCTAGCAATTAGTTTGATCCAAA
TTTGACATGGGAAGCTGCATATTATACTTCATATTCTGGGAATGTTTGTATTGGATTAAAATGGCAAAAACTGATAATAGAGATCTGAAATGTGAATTTTTAC
>TRINITY_DN39301_c0_g1_i5 from sample A8 / Example unspliced isoform:AGAAAACGAGCCATAAAAAATACGATAGTTTTGGAAAATTAAAATTCACTAATTTTGTGGCCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCC
TGGAATCATTTTATGTGATTTGTGTGGAGAATTTAGTTAAGGCGGACAGACGCCCGGCCAGAAAACGAGGGTTTTAAGTTCTACGGTGCGTTTATTTATGATTTTTTGGAGGCCTTTCTTTTTTGTGCCTTTTATTTTTCTTTTTTCTGGTTTAAGGCCACCGATCTGTTGCAGGACTGCTGCCGGAAAGAGTGGCGGAA
TCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTGCAAAAGATTGCAGGAAAAAAGTGTCGGTTTGTTTCAAGCCTGCATTTACTAGGAGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGC
CCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAA
CGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTG
ATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTT
TGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGAT
GTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTT
CCAGTGGAACCTATGCATTACAGgtatgcatggtaattcacggccattctctatttaaattttcctctgccctgtaattgtgtcaaatctgcaaaaggaattgttgccgtggttagtgaggggtaagtcccagagtccagtggtcactatttcctttttattttcgtaaagtgctttctataaagtttataagcattaag
cattacaattgaccccaggcactgcaagtgagagatagcccttgaagggtgaaccactagtcacaagcactttccttcgggtaagctgttaccacagttgatattcttctgtcaagaagacccccagggcttggctttaacagcatatttgatgactccaggggacaatttcatgattgaaccacaacgtcattgctttt
ttcaattcctttcgggttacctttcatatgccctaacattgatggtggatgtacccaacaccattggatcggtctcactcatgttcctcttccttatgactttacagGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGA
AGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTAT
GAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAA
TCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGGCTT
GTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGTTCT
GTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACAACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTATGCTCTGTAAATACAATTCTGTAATCT
ATATACTTGTAAATTTGTTCATTTATTTTACTTTTTTTTCTATTGTTACTTCCTTAAACGTGAATCACGCACCCTATAAATAACATTGATGATTGAATGGTGCAAATTATTTCGTCTAGCAATTAGTTTGATCCAAATTTGACATGGGAAGCTGCATATTATACTTCATATTCTGGGAATGTTTGTATTGGATTAAAATG
GCAAAAACTGATAATAGAGATCTGAAATGTGAATTTTTAC
Intron 4 GTAAGCATCA ... CTTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 11 | 2 | 11 |
| A2 | 48.39 | 16 | 0 | 15 |
| A3 | 46.15 | 14 | 5 | 12 |
| A4 | 30.77 | 18 | 3 | 8 |
| A5 | 47.06 | 9 | 2 | 8 |
| A6 | 40 | 15 | 0 | 10 |
| A7 | 35.48 | 20 | 2 | 11 |
| A8 | 46.67 | 8 | 0 | 7 |
| A9 | 42.86 | 8 | 3 | 6 |
| A10 | 60 | 6 | 1 | 9 |
>TRINITY_DN99044_c0_g1_i8 from sample A4 / Example spliced isoformGAAAGCTTGATTTTTTGGCGCCAGCCGTATGGTAGTCGAAAATCTTTAAATTGATGTCCGGTAAAAAAATTAAAGAGGATTTCGATGTTAATCTCTCGTTTTAGCGGAGAAATAATTATTTTAAGTTATTTCTTTGTATGATGGATTGATGACTTAAGAGCAATATGATGAAAAATTTAAGCTTGTACATTGTTTTCTTT
TTGGTTCTTTTGATTATGTTCTATAAAAAGATATGTTTCTTTAATGAAAATTGGGCCCTAGGATCTGTGTGGATTGAATTCTTCCGTATCATTCTCGGAAGAGGAAATCTCGCCCAACTTAAGTGCGGTTGCGGTTACATTCTAGTTTCTTTAATAAGAAGCAAAATTTTAGGCGTTTTGGAAGATTAAATGTTGCGCTA
CTGCGCGTCGGCTTTAATAGATTGAAAATCCTTACGATAGCGAAGAGGTTTTGTCGGATTTAACCCCGGAGATCTTGTCCACATTTCTATTCATCCATTCCTGCATGTTGCCGGTTTGTCCTAAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCAT
TTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAA
TCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGT
AACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCTGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCT
CAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCC
ATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAA
TATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCT
TTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCA
GATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGT
ATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAG
>TRINITY_DN99044_c0_g1_i3 from sample A4 / Example unspliced isoform:GAAAGCTTGATTTTTTGGCGCCAGCCGTATGGTAGTCGAAAATCTTTAAATTGATGTCCGGTAAAAAAATTAAAGAGGATTTCGATGTTAATCTCTCGTTTTAGCGGAGAAATAATTATTTTAAGTTATTTCTTTGTATGATGGATTGATGACTTAAGAGCAATATGATGAAAAATTTAAGCTTGTACATTGTTTTCTTT
TTGGTTCTTTTGATTATGTTCTATAAAAAGATATGTTTCTTTAATGAAAATTGGGCCCTAGGATCTGTGTGGATTGAATTCTTCCGTATCATTCTCGGAAGAGGAAATCTCGCCCAACTTAAGTGCGGTTGCGGTTACATTCTAGTTTCTTTAATAAGAAGCAAAATTTTAGGCGTTTTGGAAGATTAAATGTTGCGCTA
CTGCGCGTCGGCTTTAATAGATTGAAAATCCTTACGATAGCGAAGAGGTTTTGTCGGATTTAACCCCGGAGATCTTGTCCACATTTCTATTCATCCATTCCTGCATGTTGCCGGTTTGTCCTAgtaagcatcataaaactagaatatctctgcatttagagccgtcagtcgcgattagtatcgaatatttatatatgttt
gccattaaatatcttatattagctgtgtgaaaacaatcccgtatctgcaaaatctagatgccgagtttaccttttttttagcttgcacagccatgtcgtttaactgtgtctgtatcatcaccacgtaaccaaaacgggatccacacatttagttcttttatcgttttcaccttgtgggttttttttggcatgatattctt
agaattttaagccgggtaattggctttcttttatcttcttcgttagtactggcaagacttaaattgaaagcaaaacgtaccgagtagatacagcgttaaagtttgtttagcggaaacggacaatgacttatttaaaactaagaaaaaatttggtttggttggttttcttgtttcagAGGGTTCCCAAGATCAGTGAGAAC
GAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGA
GAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTT
CTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCTGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACT
GGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAA
GGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTA
AAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGA
GTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTATGAG
AAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCT
CATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAG
Intron 5 GTGCGTTTAT ... TCTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.78 | 30 | 16 | 12.7 |
| A2 | 10.4 | 25.8 | 3 | 9 |
| A3 | 20 | 40 | 10 | 13 |
| A4 | 36.36 | 21 | 12 | 6.7 |
| A5 | 6.67 | 14 | 1 | 4.7 |
| A6 | 28.85 | 37 | 15 | 9 |
| A7 | 25.54 | 70 | 24 | 29 |
| A8 | 20.81 | 22.8 | 6 | 8.3 |
| A9 | 16.42 | 56 | 11 | 11 |
| A10 | 19.32 | 71 | 17 | 13 |
>TRINITY_DN121371_c0_g1_i10 from sample A1 / Example spliced isoformCCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCCTGGAATCATTTTATGTGATTTGTGTGGAGAATTTAGTTAAGGCGGACAGACGCCCGGCCA
GAAAACGAGGGTTTTAAGTTCTACGGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTGCAAAAGATTGCAGGAAAAAAGTTTCGGTTTGTTTCAAGCCTGCATTTACTAGGAGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTAC
TGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGAAGAAATGCATTAAATATACTCAGTCTTGTTGACAGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAAT
CATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCT
ATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAA
TTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGT
TCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGC
AGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAA
AGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGC
TATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTT
TAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGG
CTTGTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGT
TCTGTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACAACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTATGCTCTGTAAATACAATTCTGTAA
TCG
>TRINITY_DN121371_c0_g1_i1 from sample A1 / Example unspliced isoform:CCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCCTGGAATCATTTTATGTGATTTGTGTGGAGAATTTAGTTAAGGCGGACAGACGCCCGGCCA
GAAAACGAGGGTTTTAAGTTCTACGgtgcgtttatttatgattttttggaggcctttcttttttgtgccttttatttttcttttttctggtttaaggccaccgatctgttgcagGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTATGTACATGCAGATCCGCGGA
AAATGAACTGTTTCCATTTGCTTTCTGCTCGTCTTTCAACTGTTATGGCGGCGGAGGTGACAGCTTTAACGTTTTAGGAATTAAGCTTGGAGAAATGAGGAAATTTGTAAATTCTGGCTGGTGATTTTTCTTTTCGCTGTTTCTTGATGGACTTATTACCGGAAAAGGGTCTGGTATATCAATTTTGTG
Intron 6 GTAAAATAAT ... TTTGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.43 | 25 | 12 | 3 |
| A2 | 21.88 | 25 | 7 | 5 |
| A3 | 33.33 | 28 | 14 | 0 |
| A4 | 15.38 | 22 | 4 | 8 |
| A5 | 23.08 | 20 | 6 | 0 |
| A6 | 31.82 | 45 | 21 | 0 |
| A7 | 28.57 | 60 | 24 | 3 |
| A8 | 30.77 | 18 | 8 | 0 |
| A9 | 27.45 | 37 | 14 | 3 |
| A10 | 22.22 | 42 | 12 | 0 |
>TRINITY_DN121371_c0_g1_i10 from sample A1 / Example spliced isoformCCGCCGTCCAGATTCTTTTGAATCATATAAAGTTTGAGCCATTGTTGTAATCCATGCAGTGAAAAGCTCAGTGATTAGTGATAATTAGTAGTTAGTTAACTGAAAGTTAAAGCTTTGGCTCTCTTATTGTTGTTGGATCCTGGAATCATTTTATGTGATTTGTGTGGAGAATTTAGTTAAGGCGGACAGACGCCCGGCCA
GAAAACGAGGGTTTTAAGTTCTACGGACTGCTGCCGGAAAGAGTGGCGGAATCATCCCTGTGAAGGAATTTTGGTCTATGTTAACCAGGTGCAAAAGATTGCAGGAAAAAAGTTTCGGTTTGTTTCAAGCCTGCATTTACTAGGAGAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTAC
TGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGAAGAAATGCATTAAATATACTCAGTCTTGTTGACAGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAAT
CATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCT
ATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAA
TTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGT
TCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGC
AGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAA
AGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGC
TATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTT
TAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGCGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGG
CTTGTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGT
TCTGTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACAACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTATGCTCTGTAAATACAATTCTGTAA
TCG
>TRINITY_DN121371_c0_g1_i8 from sample A1 / Example unspliced isoform:AGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGA
GATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGgtaaaataatttgttgcctttggcaatatagccttgggaatttgatgtctttctttcgggtttc
ttccataatttcggtggtctctttacatgggattggaaggtcttgagctccacccacatattatgaattgttctatgatgattttccctattcccgtgaatcatttttcttagattatcgatggcaatgggcataatttctttcgaatttgttgcagGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCC
AAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGGTAAGTTTTATATCTCAGTTCTCCAGAACACCAAGTCATTGCCCCTTTCAACTTTTAATCTCATGAATTTTCCTTGTCC
Intron 7 GTAAGCATCA ... CTTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 11 | 2 | 11 |
| A2 | 48.39 | 16 | 0 | 15 |
| A3 | 46.15 | 14 | 5 | 12 |
| A4 | 30.77 | 18 | 3 | 8 |
| A5 | 47.06 | 9 | 2 | 8 |
| A6 | 40 | 15 | 0 | 10 |
| A7 | 35.48 | 20 | 2 | 11 |
| A8 | 46.67 | 8 | 0 | 7 |
| A9 | 42.86 | 8 | 3 | 6 |
| A10 | 60 | 6 | 1 | 9 |
>TRINITY_DN107925_c0_g1_i6 from sample A3 / Example spliced isoformCTTTTTGGTTCTTTTGATTATGTTCTATAAAAAGATATGTTTCTTTAATGAAAATTGGGCCCTAGGATCTGTGTGGATTGAATTCTTCCGTATCATTCTCGGAAGAGGAAATCTCGCCCAACTTAAGTGCGGTTGCGGTTACATTCTAGTTTCTTTAATAAGAAGCAAAATTTTAGGCGTTTTGGAAGATTAAATGTTGC
GCTACTGCGCGTCGGCTTTAATAGATTGAAAATCCTTACGATAGCGAAGAGGTTTTGTCGGATTTAACCCCGGAGATCTTGTCCACATTTCTATTCATCCATTCCTGCATGTTGCCGGTTTGTCCTAAGGGTTCCCAAGATCAGTGAGAACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGAT
TCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCATGGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAG
AGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATATTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACT
AGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTGACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCA
ACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCTGAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTA
ACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGTGTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACAT
GCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGAAGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCC
TGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTATGAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCT
CCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGTGTTTAATCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAA
TGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGTGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGGCTTGTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACT
TATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGTTCTGTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTA
TAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACGACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTCTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACA
GTGCTTGTAGAGTATCCCACGACACCTCACAGTCTTGCCTGTAA
>TRINITY_DN107925_c0_g1_i3 from sample A3 / Example unspliced isoform:CTTTTTGGTTCTTTTGATTATGTTCTATAAAAAGATATGTTTCTTTAATGAAAATTGGGCCCTAGGATCTGTGTGGATTGAATTCTTCCGTATCATTCTCGGAAGAGGAAATCTCGCCCAACTTAAGTGCGGTTGCGGTTACATTCTAGTTTCTTTAATAAGAAGCAAAATTTTAGGCGTTTTGGAAGATTAAATGTTGC
GCTACTGCGCGTCGGCTTTAATAGATTGAAAATCCTTACGATAGCGAAGAGGTTTTGTCGGATTTAACCCCGGAGATCTTGTCCACATTTCTATTCATCCATTCCTGCATGTTGCCGGTTTGTCCTAgtaagcatcataaaactagaatatctctgcatttagagccgtcagtcgcgattagtatcgaatatttatatat
gtttgccattaaatatcttatattagctgtgtgaaaacaatcccgtatctgcaaaatctagatgccgagtttaccttttttttagcttgcacagccatgtcgtttaactgtgtctgtatcatcaccacgtaaccaaaacgggatccacacatttagttcttttatcgttttcaccttgtgggtttttttggcatgatatt
cttagaattttaagccgggtaattggctttcttttatcttcttcgttagtactggcaagacttaaattgaaagcaaaacgtaccgagtagatacagcgttaaagtttgtttagcggaaacggacaatgacttatttaaaactaagaaaaaatttggtttggttggttttcttgtttcagAGGGTTCCCAAGATCAGTGAG
AACGAAGGGATGTGCATGAAAGTCTAAGTGTACTGGAGAGGACAGCTCGGATTCATTTGTATTAAACGTGAAGAACGATCAAGCCCTTGTGCCCTTTAACATGCCTCGAGCATGCTGCCTCGCTAGCACTTTTTGAAACTCACAGGGACTTGGGCCATCAACTTTTGTATCCGAGCAGAGATTAGCAACCTGCGAATCAT
GGAGAATGTTTGTTCGCCTTATTTTGATCCGGAATATGAGAGTCTGAGTCAGAGAATCCATCCTCCCATGGTCTGTATAGACAACGATACCCGCAAAGACTGCTCCCTAGTGAAGGTTGATAGTACTAACAGGCACGGTATATTACTAGAACTAGTCCAAGTTTTGACGGATCTTGATTTAATCATCTCAAAAGCCTATA
TTTCTTCGGATGGCCGATGGTTTATGGACGTGTTCCATGTGACGGATCAACTAGGTAACAAACTGACTGACCAGAGAATCATTGATTACATACAGCAGGCTCTGGGAGCGAAACAGGGCGGTTCCACAACCGAAGTGAAGACCTGCTTGGGGCGCACTGTAGGAGTTCAGTCTATCGGAGAGCACACAGCCATCGAATTG
ACTGGCACAGATCGTCCCGGGCTGCTTTCAGAAATTTCAGCAGTGCTTACCAACCTCAGATGCAATGTAGTGGCAGCAGAAGTTTGGACTCATAACATGCGGGTTGCATGTGTGGTGTATGTAACCGATGAATCGACCTTGAGGCCCATAGAAGAGCCAGAACAGTTGGCTGCCATCAAGGAACAGCTTTCCAATGTTCT
GAAGGGGAATGATGATAGAAGAGGCGTCAAGACAGATTTTTCGATGGGTTTAACCCATACTGAGCGTCGGTTGCATCAGATGATGTTTGCTGATAGGGACTATGAGGGTCCTGTTACCAGGTCATTGGGAGAAAATGGAAGGCCTATGATCACAATAGAGAATTGCAATGAAAAGGGTTACTCTGTAGTTAATGTGCAGT
GTAAAGATAGGCCAAAGCTTCTTTTTGATACGGTCTGCACACTGACAGACATGCAATATGTGGTCTTTCATGCCGCCATTACTTCCAGTGGAACCTATGCATTACAGGAATACTTTATTCGTCACATGGATGGTTGTACTCTGGACACTGATGGTGAGAAACAACGTGTAATCAAGTGTTTAGAGGCTGCAATAGAAAGA
AGAGTATCAGAGGGGGTTCGTCTTGAGCTCTGCACCAGTGACCGAGTTGGCCTGCTTTCTGACATTACACGCATTTTCCGCGAGAATGGTCTGTCTGTTACAAGGGCAGATGTTACAACACGAGGGGATAAAGCTGTAAATGTATTCTATGTCACAGATACATCGGGAAATCCTGTAGACATGAAGATTGTTGAAGCTAT
GAGAAGAGAAATTGGCCATACAATTCTGCAAGTGAAAAGTATGCCTAGTTCTCCCAGATCTTGTCCAACAGACACTGAAGATAAGGCCAAGTTTTCATTTGGTAGCTTACTTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGTGTTTAA
TCTCATCACGCATTTTTGAAAGGCAAGTGTCCATTCCATCCTCTGGTAAAAATGGTATTAAATCCCAGCTTGAGCGTTTATCTTATAACTTTGGTCTAATCAAGTCCTAAATTGGGATTCAAATGTGTGAGAGAAAACAGTGTTTAATCTCATCACGCATTTTTGAAAGACAAGTGTCCATCCTCTTGTAAAAGTGGCTT
GTCTTTACCGTGTCAGGGTGCTTGCAACCTGTGGTAGGTCACACTGATGACTTATTTTCTGTATCATACAGTAGAAGGGATCCAGACAAAAGTGTTATTGATTTAGCAGTCTGCATCTTTTCGAAGCATCAAACATCTTACAACAGAGTTCTGCTCCAGGATGCACTAGCTATTTCAATTTTCAACTTGTTGTAAGTTCT
GTCAAAACATTTCACTCTATGGATCCATCTTGTGCCCTGTAAAATGCTGTTATAAATATTTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACGACACCTCACAGTCTTGCCTGTAAGTACAAGGGAGGAAACTCTGCCCTGTAAAATGCTGTTATAAATAT
TTTTCCTTTGTAATGTGTCATGTTGAAGCCGGTTTTTCCTTCCGGAGATACAGTGCTTGTAGAGTATCCCACGACACCTCACAGTCTTGCCTGTAA