sp|Q6Z1C0|NUCL1_ORYSJ ----> Nucleolin 1
Intron 1 GTAAGACCAT ... ATTGCTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.84 | 131 | 41 | 18.7 |
| A2 | 24.32 | 112 | 36 | 18.7 |
| A3 | 23.5 | 140 | 43 | 25 |
| A4 | 23.6 | 123 | 38 | 9.3 |
| A5 | 22.61 | 89 | 26 | 16 |
| A6 | 28.57 | 5 | 2 | 0.7 |
| A7 | 17.95 | 96 | 21 | 12 |
| A8 | 24.39 | 31 | 10 | 3 |
| A9 | 24.44 | 68 | 22 | 4 |
| A10 | 17.05 | 107 | 22 | 9.7 |
>TRINITY_DN111517_c1_g1_i2 from sample A3 / Example spliced isoformCTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCATCAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAAC
ATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAAAATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGATAGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAA
ACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTGAGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGTATGTGCCTCATAACTCTGTAACTTGTTCCATTGTTGCATCATTGC
CCATTGTCATCTTCGCCTGGGTACTCTGCTTATTCACCACTTCTTTTCTCCTTGTCGGCTTATAGCTTGCCTCAGGCCTTGAGGCCCCTCCTTCCTTCAAAAATCCATAAAAAGCTTCTAGATCTAGAATTTAGCCCACAAAGTTAGAGCCTTAGAAACATATTTGCATTGTCCTCCCTTCTATCAGACACAAAAAGGTT
TTCTTGACTTGTAGATAAAGGTTGGTCTTCGGCTTTACCACTAACCTCCATAAATGACTATAAAATATTGTCCAAGAAATTTATCCTTGGAGAGCTCTCACTCCTTAGTGTTAGATTGTTTGAGCCCAGACCCA
>TRINITY_DN111517_c1_g1_i4 from sample A3 / Example unspliced isoform:CTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAgtaagaccattcctttccgttcacgtttaagctatttttgtttcaggtttaagagaaatcattgctttagatttttaattgtcgacgttatgaaacctcagtttacctcattacgtctggaagtgaatgtatgtatttatacaacttgattaaacgtctgcaaggaataatcgtcgatcctttttccga
acgccttccttttaatttattttctgaactttcttaatttttttttttttgggcgggtcggggcggggggcgtatggcagcatgtaaagtgttggcttgtcgcaagcaacccttataactatactcatagatacaagtaaataggtttagtcatcatcaggtagctatagaaaggtagcagaacgaacttttcctgttat
ccgttaaatggtgtgatgttcataatcacatttgtttttatttatttagtttcttcttcttctttgtattgagtagtgctattttgtctctaatcctataaatttacgttcgcagaataaagtatccttgaatcaatcgatagacacagcctgggtttttagtttttgataagtattttttgtaaagtagttgtggagta
taggatagggtgttttgctagggtaagatcaaagggttcaatattgggtacaatgtatattgttctatactcggtgtctaagattgccattgaaattgcatatgtatgattggacccatagtaacggtttaatccttttcttcactaaaatggctttaaaattttcaaagtagcttatcttgatcagcctggcatagaca
gaagtatcttacatttttttcttacgtataacgataactagttggaattgctccagGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCAT
CAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAACATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAAAATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGAT
AGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTGAGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGT
AACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAACCGAAACCGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAA
GTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGCAACTAAGGCCCAACACTCAGTAAAGGCTGTTGCTGCAAAGTCCAGTAAAATGGATACA
AGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGACGAGGAACCAAAATCAAAAAAGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAAAGGCAACCAAGGCCCAACAACTAGTAAAGGCTGT
TCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAATGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGC
Intron 2 GTAATTTCAC ... TGTAACTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.44 | 221 | 11 | 156 |
| A2 | 38 | 142.3 | 8 | 87 |
| A3 | 32.85 | 131 | 9 | 64 |
| A4 | 35.84 | 126.7 | 2 | 70 |
| A5 | 29.09 | 71 | 6 | 28 |
| A6 | 41.67 | 7 | 1 | 5 |
| A7 | 32.7 | 107.3 | 0 | 52 |
| A8 | 37.03 | 42.7 | 0 | 25 |
| A9 | 32.8 | 60 | 0 | 29 |
| A10 | 30.88 | 95 | 0 | 42 |
>TRINITY_DN111517_c1_g1_i4 from sample A3 / Example spliced isoformCTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGTAAGACCATTCCTTTCCGTTCACGTTTAAGCTATTTTTGTTTCAGGTTTAAGAGAAATCATTGCTTTAGATTTTTAATTGTCGACGTTATGAAACCTCAGTTTACCTCATTACGTCTGGAAGTGAATGTATGTATTTATACAACTTGATTAAACGTCTGCAAGGAATAATCGTCGATCCTTTTTCCGA
ACGCCTTCCTTTTAATTTATTTTCTGAACTTTCTTAATTTTTTTTTTTTTGGGCGGGTCGGGGCGGGGGGCGTATGGCAGCATGTAAAGTGTTGGCTTGTCGCAAGCAACCCTTATAACTATACTCATAGATACAAGTAAATAGGTTTAGTCATCATCAGGTAGCTATAGAAAGGTAGCAGAACGAACTTTTCCTGTTAT
CCGTTAAATGGTGTGATGTTCATAATCACATTTGTTTTTATTTATTTAGTTTCTTCTTCTTCTTTGTATTGAGTAGTGCTATTTTGTCTCTAATCCTATAAATTTACGTTCGCAGAATAAAGTATCCTTGAATCAATCGATAGACACAGCCTGGGTTTTTAGTTTTTGATAAGTATTTTTTGTAAAGTAGTTGTGGAGTA
TAGGATAGGGTGTTTTGCTAGGGTAAGATCAAAGGGTTCAATATTGGGTACAATGTATATTGTTCTATACTCGGTGTCTAAGATTGCCATTGAAATTGCATATGTATGATTGGACCCATAGTAACGGTTTAATCCTTTTCTTCACTAAAATGGCTTTAAAATTTTCAAAGTAGCTTATCTTGATCAGCCTGGCATAGACA
GAAGTATCTTACATTTTTTTCTTACGTATAACGATAACTAGTTGGAATTGCTCCAGGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCAT
CAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAACATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAAAATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGAT
AGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTGAGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGT
AACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAACCGAAACCGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAA
GTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGCAACTAAGGCCCAACACTCAGTAAAGGCTGTTGCTGCAAAGTCCAGTAAAATGGATACA
AGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGACGAGGAACCAAAATCAAAAAAGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAAAGGCAACCAAGGCCCAACAACTAGTAAAGGCTGT
TCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAATGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGC
>TRINITY_DN111517_c1_g1_i3 from sample A3 / Example unspliced isoform:CTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGTAAGACCATTCCTTTCCGTTCACGTTTAAGCTATTTTTGTTTCAGGTTTAAGAGAAATCATTGCTTTAGATTTTTAATTGTCGACGTTATGAAACCTCAGTTTACCTCATTACGTCTGGAAGTGAATGTATGTATTTATACAACTTGATTAAACGTCTGCAAGGAATAATCGTCGATCCTTTTTCCGA
ACGCCTTCCTTTTAATTTATTTTCTGAACTTTCTTAATTTTTTTTTTTTTGGGCGGGTCGGGGCGGGGGGCGTATGGCAGCATGTAAAGTGTTGGCTTGTCGCAAGCAACCCTTATAACTATACTCATAGATACAAGTAAATAGGTTTAGTCATCATCAGGTAGCTATAGAAAGGTAGCAGAACGAACTTTTCCTGTTAT
CCGTTAAATGGTGTGATGTTCATAATCACATTTGTTTTTATTTATTTAGTTTCTTCTTCTTCTTTGTATTGAGTAGTGCTATTTTGTCTCTAATCCTATAAATTTACGTTCGCAGAATAAAGTATCCTTGAATCAATCGATAGACACAGCCTGGGTTTTTAGTTTTTGATAAGTATTTTTTGTAAAGTAGTTGTGGAGTA
TAGGATAGGGTGTTTTGCTAGGGTAAGATCAAAGGGTTCAATATTGGGTACAATGTATATTGTTCTATACTCGGTGTCTAAGATTGCCATTGAAATTGCATATGTATGATTGGACCCATAGTAACGGTTTAATCCTTTTCTTCACTAAAATGGCTTTAAAATTTTCAAAGTAGCTTATCTTGATCAGCCTGGCATAGACA
GAAGTATCTTACATTTTTTTCTTACGTATAACGATAACTAGTTGGAATTGCTCCAGGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGgtaatttcactggcaatgagtttatgcatttactagcatgtatataccctccctttctatactgtagctttgacat
ttttttaactctgtaactcagGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCATCAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAACATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAA
AATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGATAGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTG
AGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGTAACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAA
CCGAAACCGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAAGTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGA
AAGTTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGCAACTAAGGCCCAACACTCAGTAAAGGCTGTTGCTGCAAAGTCCAGTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGACGAGGAACCAAAATCAAAAAAGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTA
AAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAAAGGCAACCAAGGCCCAACAACTAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAATGGCAACCAAGGCCCAACAAATA
GTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGC
Intron 3 GTTTGTTCCT ... GGTTATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.37 | 260 | 55 | 62 |
| A2 | 21.79 | 131 | 20 | 53 |
| A3 | 18.18 | 171 | 46 | 30 |
| A4 | 21.04 | 122 | 32 | 33 |
| A5 | 27.74 | 56 | 18 | 25 |
| A6 | 55.56 | 2 | 3 | 2 |
| A7 | 17.17 | 123 | 25 | 26 |
| A8 | 18.06 | 59 | 13 | 13 |
| A9 | 15.93 | 95 | 12 | 24 |
| A10 | 14.09 | 128 | 19 | 23 |
>TRINITY_DN111517_c1_g1_i3 from sample A3 / Example spliced isoformCTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGTAAGACCATTCCTTTCCGTTCACGTTTAAGCTATTTTTGTTTCAGGTTTAAGAGAAATCATTGCTTTAGATTTTTAATTGTCGACGTTATGAAACCTCAGTTTACCTCATTACGTCTGGAAGTGAATGTATGTATTTATACAACTTGATTAAACGTCTGCAAGGAATAATCGTCGATCCTTTTTCCGA
ACGCCTTCCTTTTAATTTATTTTCTGAACTTTCTTAATTTTTTTTTTTTTGGGCGGGTCGGGGCGGGGGGCGTATGGCAGCATGTAAAGTGTTGGCTTGTCGCAAGCAACCCTTATAACTATACTCATAGATACAAGTAAATAGGTTTAGTCATCATCAGGTAGCTATAGAAAGGTAGCAGAACGAACTTTTCCTGTTAT
CCGTTAAATGGTGTGATGTTCATAATCACATTTGTTTTTATTTATTTAGTTTCTTCTTCTTCTTTGTATTGAGTAGTGCTATTTTGTCTCTAATCCTATAAATTTACGTTCGCAGAATAAAGTATCCTTGAATCAATCGATAGACACAGCCTGGGTTTTTAGTTTTTGATAAGTATTTTTTGTAAAGTAGTTGTGGAGTA
TAGGATAGGGTGTTTTGCTAGGGTAAGATCAAAGGGTTCAATATTGGGTACAATGTATATTGTTCTATACTCGGTGTCTAAGATTGCCATTGAAATTGCATATGTATGATTGGACCCATAGTAACGGTTTAATCCTTTTCTTCACTAAAATGGCTTTAAAATTTTCAAAGTAGCTTATCTTGATCAGCCTGGCATAGACA
GAAGTATCTTACATTTTTTTCTTACGTATAACGATAACTAGTTGGAATTGCTCCAGGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTAATTTCACTGGCAATGAGTTTATGCATTTACTAGCATGTATATACCCTCCCTTTCTATACTGTAGCTTTGACAT
TTTTTTAACTCTGTAACTCAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCATCAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAACATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAA
AATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGATAGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTG
AGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGTAACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAA
CCGAAACCGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAAGTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGA
AAGTTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGCAACTAAGGCCCAACACTCAGTAAAGGCTGTTGCTGCAAAGTCCAGTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGACGAGGAACCAAAATCAAAAAAGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTA
AAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAAAGGCAACCAAGGCCCAACAACTAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAATGGCAACCAAGGCCCAACAAATA
GTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGC
>TRINITY_DN111517_c1_g1_i7 from sample A3 / Example unspliced isoform:CTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCATCAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAAC
ATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGTGTGCACAGGGGCCAATTAAAATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGATAGTGATTCTGAAGAAGAGAAGgtttgttccttaaat
atttacttaagaaaaactgcatttatccctcaaatagttttatttaatggagctttgtcttaattatgaatattcaatggttatctagGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTGAGGATGACAGCAGTGAAGATGAATCTTCTG
ATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGTA
Intron 4 GTGTGTTCAA ... CCTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.9 | 1782.3 | 120 | 0 |
| A2 | 8.22 | 1635 | 133 | 0 |
| A3 | 9.52 | 1378.5 | 133 | 7 |
| A4 | 8.36 | 550.3 | 46 | 0 |
| A5 | 11.67 | 255 | 32 | 1 |
| A6 | 6.49 | 94.3 | 6 | 0 |
| A7 | 7.07 | 1434 | 101 | 0 |
| A8 | 6.9 | 661 | 45 | 0 |
| A9 | 8.34 | 1042 | 88 | 0 |
| A10 | 7 | 1312.8 | 88 | 0 |
>TRINITY_DN111517_c1_g1_i3 from sample A3 / Example spliced isoformCTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGTAAGACCATTCCTTTCCGTTCACGTTTAAGCTATTTTTGTTTCAGGTTTAAGAGAAATCATTGCTTTAGATTTTTAATTGTCGACGTTATGAAACCTCAGTTTACCTCATTACGTCTGGAAGTGAATGTATGTATTTATACAACTTGATTAAACGTCTGCAAGGAATAATCGTCGATCCTTTTTCCGA
ACGCCTTCCTTTTAATTTATTTTCTGAACTTTCTTAATTTTTTTTTTTTTGGGCGGGTCGGGGCGGGGGGCGTATGGCAGCATGTAAAGTGTTGGCTTGTCGCAAGCAACCCTTATAACTATACTCATAGATACAAGTAAATAGGTTTAGTCATCATCAGGTAGCTATAGAAAGGTAGCAGAACGAACTTTTCCTGTTAT
CCGTTAAATGGTGTGATGTTCATAATCACATTTGTTTTTATTTATTTAGTTTCTTCTTCTTCTTTGTATTGAGTAGTGCTATTTTGTCTCTAATCCTATAAATTTACGTTCGCAGAATAAAGTATCCTTGAATCAATCGATAGACACAGCCTGGGTTTTTAGTTTTTGATAAGTATTTTTTGTAAAGTAGTTGTGGAGTA
TAGGATAGGGTGTTTTGCTAGGGTAAGATCAAAGGGTTCAATATTGGGTACAATGTATATTGTTCTATACTCGGTGTCTAAGATTGCCATTGAAATTGCATATGTATGATTGGACCCATAGTAACGGTTTAATCCTTTTCTTCACTAAAATGGCTTTAAAATTTTCAAAGTAGCTTATCTTGATCAGCCTGGCATAGACA
GAAGTATCTTACATTTTTTTCTTACGTATAACGATAACTAGTTGGAATTGCTCCAGGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTAATTTCACTGGCAATGAGTTTATGCATTTACTAGCATGTATATACCCTCCCTTTCTATACTGTAGCTTTGACAT
TTTTTTAACTCTGTAACTCAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCATCAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAACATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAA
AATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGATAGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTG
AGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGTAACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAA
CCGAAACCGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAAGTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGA
AAGTTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGCAACTAAGGCCCAACACTCAGTAAAGGCTGTTGCTGCAAAGTCCAGTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGACGAGGAACCAAAATCAAAAAAGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTA
AAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAAAGGCAACCAAGGCCCAACAACTAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAATGGCAACCAAGGCCCAACAAATA
GTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGC
>TRINITY_DN111517_c1_g1_i1 from sample A3 / Example unspliced isoform:ACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAACCGAAACCGGTGTGTCCAGTTTTTGATAGAAATGTTGAATGGCAATCGTTTTTACTTTCTTGTATTTCCTTCTAGTTCAAGTTTAACAAAGAGTCCTT
TTGTAGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAAGTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGAAAG
TTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGgtgtgttcaatttttaatagaaatgctaaatgctaaccacatttccttttttgtggttatgtacttgaggtctaaaaaggagtccttttgtagGCAACTAAGGCCCAAC
Intron 5 GTGTGTCCAG ... CCTTTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.06 | 289.5 | 2 | 36 |
| A2 | 9.89 | 310 | 16 | 34 |
| A3 | 15.38 | 253.5 | 9 | 46 |
| A4 | 8.7 | 115.5 | 2 | 11 |
| A5 | 25.33 | 44.3 | 3 | 15 |
| A6 | 20 | 4 | 0 | 1 |
| A7 | 7.91 | 198.5 | 2 | 17 |
| A8 | 13.42 | 129 | 4 | 20 |
| A9 | 15.29 | 144 | 0 | 26 |
| A10 | 16.08 | 162 | 9 | 31 |
>TRINITY_DN111517_c1_g1_i3 from sample A3 / Example spliced isoformCTTGTATTTAGTTTTTACCTTACCGCGCGCTTCTTTTCTCTGCATTGCAATATTTTTTCGGCGACTGACTGCGGTGGAGTCGGCAGCTTTTTTAAACCTAAACCCTAAACCCTAAATCCGCACCCGCACCAGCACCCGCACCCGCACAGAGGTTATACAGGTTATACAGTCGACGGCGCCGGCGGATATTAAGGTTTTCT
GCTTTAACCAAGTAAGACCATTCCTTTCCGTTCACGTTTAAGCTATTTTTGTTTCAGGTTTAAGAGAAATCATTGCTTTAGATTTTTAATTGTCGACGTTATGAAACCTCAGTTTACCTCATTACGTCTGGAAGTGAATGTATGTATTTATACAACTTGATTAAACGTCTGCAAGGAATAATCGTCGATCCTTTTTCCGA
ACGCCTTCCTTTTAATTTATTTTCTGAACTTTCTTAATTTTTTTTTTTTTGGGCGGGTCGGGGCGGGGGGCGTATGGCAGCATGTAAAGTGTTGGCTTGTCGCAAGCAACCCTTATAACTATACTCATAGATACAAGTAAATAGGTTTAGTCATCATCAGGTAGCTATAGAAAGGTAGCAGAACGAACTTTTCCTGTTAT
CCGTTAAATGGTGTGATGTTCATAATCACATTTGTTTTTATTTATTTAGTTTCTTCTTCTTCTTTGTATTGAGTAGTGCTATTTTGTCTCTAATCCTATAAATTTACGTTCGCAGAATAAAGTATCCTTGAATCAATCGATAGACACAGCCTGGGTTTTTAGTTTTTGATAAGTATTTTTTGTAAAGTAGTTGTGGAGTA
TAGGATAGGGTGTTTTGCTAGGGTAAGATCAAAGGGTTCAATATTGGGTACAATGTATATTGTTCTATACTCGGTGTCTAAGATTGCCATTGAAATTGCATATGTATGATTGGACCCATAGTAACGGTTTAATCCTTTTCTTCACTAAAATGGCTTTAAAATTTTCAAAGTAGCTTATCTTGATCAGCCTGGCATAGACA
GAAGTATCTTACATTTTTTTCTTACGTATAACGATAACTAGTTGGAATTGCTCCAGGGTGATTTGCTTCTCCTGTCTATTTTGTTATAAAGATGGGGAAGTCTAACGGGAAAACTAATGCTGAGGTAATTTCACTGGCAATGAGTTTATGCATTTACTAGCATGTATATACCCTCCCTTTCTATACTGTAGCTTTGACAT
TTTTTTAACTCTGTAACTCAGGTCGCTGTCCTTGCTTCAAAAGAAGGGAAAAAAGGCAAGCGGCAATCGGAAGCTGAAATTGATATTCAACCTTCATCAAAGAAATTAAAGTCTGCTGCCAAAGTACCTCAGAAAAAGAAACATGAGACATCTTCCTCATCCGAGGAAGATTCTGATTCAGAGGAAGAGGGGCCAATTAA
AATAGCTGCTCCAGCGAAGAAAACCCCGGCATTGGCAAAGAATGGGTCAGTTACGGCTTTAAGAAATGGTAAAACAGAATCAAGTGATAGTTCAGATAGTGATTCTGAAGAAGAGAAGGCTCAGGTTAAAAAGCCATTGCAAACAAAGGCTGCAGGGAAAATAAATGCTGCCAAAGGGAAACTGGTAGAAGAAAGCAGTG
AGGATGACAGCAGTGAAGATGAATCTTCTGATGAGGAGCCTGTAACAAAGGTTACCCAGCCAAACAAAAAAGTGGCAAGCTTGGCATCTCAAAAGGTAACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAA
CCGAAACCGGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAAGTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGA
AAGTTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGCAACTAAGGCCCAACACTCAGTAAAGGCTGTTGCTGCAAAGTCCAGTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAAAGTGACGAGGAACCAAAATCAAAAAAGGCAACCAAGGCCCAACAAATAGTAAAGGCTGTTCCTGCAAAACCTGTTA
AAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAAAGGCAACCAAGGCCCAACAACTAGTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGCAGTGAGGAAGAAAGTTCTGAGAGTGACGAGGAACCAAAACCAAAAATGGCAACCAAGGCCCAACAAATA
GTAAAGGCTGTTCCTGCAAAACCTGTTAAAATGGATACAAGCAGC
>TRINITY_DN111517_c1_g1_i1 from sample A3 / Example unspliced isoform:ACCAAGGCACAACAACTAGTAAAGTCTGTTCCTGCGAAGTCTGTTAAAATGGATACAAGCAGCAGTGAGGACGAATCTTCTGAAAGTGATGAAGAACCAAAACCGAAACCGgtgtgtccagtttttgatagaaatgttgaatggcaatcgtttttactttcttgtatttccttctagttcaagtttaacaaagagtcctt
ttgtagGTAACCAAGGTCCAACAACCAGTAAAGGCTGTTCCTGCGAAGTCTGTTAAAGTGGATACAAGCAGCAGCGAGGAAGAAACTTCTGAAAGTGATGAGGAACCAAAACCAAAATTGGCAACCAAGGCCCAACAATCAGTAAAGGCTGTTCCTGCAAAGTCTGTTAAAAAGGATACAAGCAGCAGTGAGGAAGAAAG
TTCTGAAAGTGATGAGGAGCCAAAACCAAAACTGGTGTGTTCAATTTTTAATAGAAATGCTAAATGCTAACCACATTTCCTTTTTTGTGGTTATGTACTTGAGGTCTAAAAAGGAGTCCTTTTGTAGGCAACTAAGGCCCAAC