NA ----> NA
Intron 1 GTTTGACCAG ... TTGGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 6 | 10 | 2 |
| A2 | 46.15 | 7 | 6 | 1 |
| A3 | 45.45 | 12 | 10 | 1 |
| A4 | 50 | 6 | 6 | 0 |
| A5 | 56.25 | 7 | 9 | 0 |
| A6 | 70.64 | 32 | 77 | 7 |
| A7 | 62.86 | 39 | 66 | 7 |
| A8 | 65.31 | 34 | 64 | 7 |
| A9 | 57.47 | 37 | 50 | 6 |
| A10 | 48.15 | 42 | 39 | 9 |
>TRINITY_DN37379_c0_g1_i2 from sample A6 / Example spliced isoformATCTCCCATATTGCTTTTACATTCAAACTTTAAGAAATTCCCTCCGGCAAAGAATAGCCGCTACCGCTAAACCCTAAATTCTCGATTCTTTATTTGCAACACAACAGCGATCGAATCCCTTCAACCCCGAGTCCATTGAAAAATCACAGTAATTGCACGCCACAATCGTCCATGCGGCGGCCTTGAGCTTTTGCAAAGAG
GCCTTAACCCTCCCTGGAGCTGGCGTCCTGATGGTAAACCTGTAGCTAAGAAGAAACATCTGCCTTTTCTTCCAGAAGTCTGCTCCACGGCGATTAGACAGTGACCGATATTCTTCTTTGCCGGATTCGAACTCAAGATCATCTTTGTAGTCGCGTGGTTGCAGGTTGAGCGGGGAGGAGGGAAGCCTAACAGAGGTCTC
TCTTAGCATCCTGCCAGAGTTCCGTCTACTTCTGCTATAAAGAACAGAAACCTCCATCGCAGAATTAATAGGGAAAGAAAATAAAGAACAGCAGCTCCTCCAGCGCTGTATATATGCAGCTGAAGCCAGTGGACGAATCTGATAAAGACTTTGAAGTCCAAATGACGTGCTTTGTCATAGACGTCTGCTTCTGGAGAGTG
CCGTGCTCGGATCGAATCCTGTTACGATCAAACAACGAATGCAAAGAAAGCTCTGAAATATTTGGACCATTAACATCAATTGCTTGTGAAAAATGTTACAACCTCACATCCACTCAGAGACTGGAACCTCTCAAGTCAATGGTTCAGGTTAAAAAGGGGTTACGATATGTGATGTGGCCTAAAGGGGTTACGATATGTGA
TGTGGCCTACTTCTTTGGCTCTGATAGCCCCTGTTAACAGATTGACAATTCCTTCCTTTTCTATTCGCTGTCTTTTCACGGGAGGCG
>TRINITY_DN37379_c0_g1_i4 from sample A6 / Example unspliced isoform:ATCTCCCATATTGCTTTTACATTCAAACTTTAAGAAATTCCCTCCGGCAAAGAATAGCCGCTACCGCTAAACCCTAAATTCTCGATTCTTTATTTGCAACACAACAGCGATCGAATCCCTTCAACCCCGAGTCCATTGAAAAATCACAGTAATTGCACGCCACAATCGTCCATGCGGCGGCCTTGAGCTTTTGCAAAGAG
GCCTTAACCCTCCCTGGAGCTGGCGTCCTGATGGTAAACCTGTAGCTAAGAAGAAACATCTGCCTTTTCTTCCAGAAGTCTGCTCCACGGCGATTAGACAGTGACCGATATTCTTCTTTGCCGGATTCGAACTCAAGATCATCTTTGTAGTCGCGTGGTTGCAGGTTGAGCGGGGAGGAGGGAAGCCTAACAGAGGTCTC
TCTTAGCATCCTGCCAGAGTTCCGTCTACTTCTGCTATAAAGAACAGAAACCTCCATCGCAGAATTAATAGGGAAAGAAAATAAAGAACAGCAGCTCCTCCAGCGCTGTATATATGCAGCTGAAGCCAGTGGACGAATCTGATAAAGACTTTGAAGTCCAAATGACGTGCTTTGTCATAGACGTCTGCTTCTGGAGAGTG
CCGTGCTCGGATCGAATCCTGTTACGATCAAACAACGAATGCAAAGAAAGgtttgaccagtcagatttgtgattaatttagtccaaagttgaatgttacgccatagaaaataaaatagtaccgtctcatctgccgattttttcctgtttgatcttgaagtggggctcaaagctaaatcaatctttatcagatatcgtttt
tttttgtatgttacgccatagaaaataaaatagtaccgtctcatctgccgattttttccggtttgatctggaagtggggctcaaacctaaatcaatctttatcagatatcgatttttgtgacagctccgagtatttgatacatcaatagcatttgaacatttttctttttgatatggactcaaacctaactccatctttg
tcagatctggatgtacattattttttgtcatagctagatatttggatcatggaaatgcatttgaagattgatttttttttcttttatcttaaattgaagtgtgactcaaacctaattccacggttttggttacagCTCTGAAATATTTGGACCATTAACATCAATTGCTTGTGAAAAATGTTACAACCTCACATCCACTC
AGAGACTGGAACCTCTCAAGTCAATGGTTCAGGTTAAAAAGGGGTTACGATATGTGATGTGGCCTAAAGGGGTTACGATATGTGATGTGGCCTACTTCTTTGGCTCTGATAGCCCCTGTTAACAGATTAACAATTCCTTCCTTTTCCATTCGGTGTCTTTTCACGGGAGGCGTCATTGAAGATTTTTTTGAAAAATCCAA
GAACAACTTTTTATTTGATTGAATTGTAAAATTTAAATATTTGAATTGTAAAATTTAAATATTAAATTTGCATAATTTGAATGTAGTTGAGGTTCATGAGAATTCAGGAGTCTAATATTATTGTG
Intron 2 GTAAGATAAT ... TGTGAATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 7.69 | 6 | 1 | 0 |
| A2 | 50 | 1 | 2 | 0 |
| A3 | 0 | 1 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 42.86 | 2 | 1 | 2 |
| A6 | 12 | 22 | 4 | 2 |
| A7 | 19.23 | 21 | 4 | 6 |
| A8 | 18.28 | 38 | 10 | 7 |
| A9 | 16.67 | 30 | 4 | 8 |
| A10 | 25 | 3 | 1 | 1 |
>TRINITY_DN45031_c2_g1_i3 from sample A8 / Example spliced isoformCCCATATTGCTTTTACATTCAAACTTTAAGAAATTCCCTCCGGCAAAGAATAGCCGCTACCGCTAAACCCTAAATTCTCGATTCTTTATTTGCAACACAACAGCGATCGAATCCCTTCAACCCCGAGTCCATTGAAAAATCACGGTAATTGCACGCCACAATCGTCCATGCGGCGGCCTTGAGCTTTTGCAAAGAGGCCT
TAACCCTCCCTGGAGCTGGCGTCCTGATGGTAAACCTGTAGCTAAGAAGAAACATCTGCCTTTTCTTCCAGAAGTCTGCTCCACGGCGATTAGACAGTGACCGATATTCTTCTTTGCCGGATTCGAACTCAAGATCATCTTTGTAGTCGCGTGGTTGCAGGTTGAGCGGGGAGGAGGGAAGCCTAACAGAGGTCTCTCTT
AGCATCCTGCCAGAGTTCCGTCTACTTCTGCTATAAAGAACAGAAACCTCCATCGCAGAATTAATAGGGAAAGAAAATAAAGAACAGCAGCTCCTCCAGCGCTGTATATATGCAGCTGAAGCCAGTGGACGAATCTGATAAAGACTTTGAAGTCCAAATGACGTGCTTTGTCATAGACGTCTGCTTCTGGAGAGTGCCGT
GCTCGGATCGAATCCTGTTACGATCAAACAACGAATGCAAAGAAAGCTCTGAAATATTTGGACCATTAACATCAATTGCTTGTGAAAAATGTTACAACCTCACATCCACTCAGAGACTGGAACCTCTCAAGTCAATGGTTCAGGTTAAAAAGGGGTTACGATATGTGATGTGGCCTAAAGGGGTTACGATATGTGATGTG
GCCTACTTCTTTGGCTCTGATAGCCCCTGTTAACAGATTGACAATTCCTTCCTTTTCTATTCGCTGTCTTTTCACGGGAGGCGTCATTGAAGATTTTTTTGAAAAATCCAAGAACAACTTTTTATTTGATTGAATTGTAAAATTTAAATATTTGAATTGTAAAATTTAAATATTAAATTTGCATAATTTGAATGTAGTTG
AGGTTCATGAGAATTCAGGAGTCTAATATTATTGTGGGTTATTGTTGAAACGTTAGCATTCATTGATTCATTTTAGTGTTTGATAGATTTGGG
>TRINITY_DN45031_c2_g1_i6 from sample A8 / Example unspliced isoform:CCCATATTGCTTTTACATTCAAACTTTAAGAAATTCCCTCCGGCAAAGAATAGCCGCTACCGCTAAACCCTAAATTCTCGATTCTTTATTTGCAACACAACAGCGATCGAATCCCTTCAACCCCGAGTCCATTGAAAAATCACGGTAATTGCACGCCACAATCGTCCATGCGGCGGCCTTGAGCTTTTGCAAAGAGGCCT
TAACCCTCCCTGGAGCTGGCGTCCTGATGGTAAACCTGTAGCTAAGAAGAAACATCTGCCTTTTCTTCCAGAAGTCTGCTCCACGGCGATTAGACAGTGACCGATATTCTTCTTTGCCGGATTCGAACTCAAGATCATCTTTGTAGTCGCGTGGTTGCAGGTTGAGCGGGGAGGAGGGAAGCCTAACAGAGGTCTCTCTT
AGCATCCTGCCAGAGTTCCGTCTACTTCTGCTATAAAGAACAGAAACCTCCATCGCAGAATTAATAGGGAAAGAAAATAAAGAACAGCAGCTCCTCCAGCGCTGTATATATGCAGCTGAAGCCAGTGGACGAATCTGATAAAGACTTTGAAGTCCAAATGACGTGCTTTGTCATAGACGTCTGCTTCTGGAGAGTGCCGT
GCTCGGATCGAATCCTGTTACGATCAAACAACGAATGCAAAGAAAGGTTTGACCAGTCAGATTTGTGATTAATTTAGTCCAAAGTTGAATGTTACGCCATAGAAAATAAAATAGTACCGTCTCATCTGCCGATTTTTTCCTGTTTGATCTTGAAGTGGGGCTCAAAGCTAAATCAATCTTTATCAGATATCGTTTTTTTT
TGTATGTTACGCCATAGAAAATAAAATAGTACCGTCTCATCTGCCGATTTTTTCCGGTTTGATCTGGAAGTGGGGCTCAAACCTAAATCAATCTTTATCAGATATCGATTTTTGTGACAGCTCCGAGTATTTGATACATCAATAGCATTTGAACATTTTTCTTTTTGATATGGACTCAAACCTAACTCCATCTTTGTCAG
ATCTGGATGTACATTATTTTTTGTCATAGCTAGATATTTGGATCATGGAAATGCATTTGAAGATTGATTTTTTTTTCTTTTATCTTAAATTGAAGTGTGACTCAAACCTAATTCCACGGTTTTGGTTACAGCTCTGAAATATTTGGACCATTAACATCAATTGCTTGTGAAAAATGTTACAACCTCACATCCACTCAGAG
ACTGGAACCTCTCAAGTCAATGGTTCAGGTTAAAAAGGGGTTACGATATGTGATGTGGCCTAAAGGGGTTACGATATGTGATGTGGCCTACTTCTTTGGCTCTGATAGCCCCTgtaagataatgcacgattcctttctatttttatttttttatttcatggttttaaattgtggttctaaacctgtttactttttaaatc
ttttatcgtattagaaaaatccaaattttatattatttttgtgaattagGTTAACAGATTGACAATTCCTTCCTTTTCTATTCGCTGTCTTTTCACGGGAGGCGTCATTGAAGATTTTTTTGAAAAATCCAAGAACAACTTTTTATTTGATTGAATTGTAAAATTTAAATATTTGAATTGTAAAATTTAAATATTAAATT
TGCATAATTTGAATGTAGTTGAGGTTCATGAGAATTCAGGAGTCTAATATTATTGTGGGTTATTGTTGAAACGTTAGCATTCATTGATTCATTTTAGTGTTTGATAGATTTGGG