sp|Q8L981|APC13_ARATH ----> Anaphase-promoting complex subunit 13

Intron 1 GTGAGTAACT ... ATTTTTACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	62.5	9	15	8.5
A2	100	0	2	3
A3	50	4	4	8
A4	62.5	1	2	1.5
A5	83.34	0.5	4	2.5
A6	47.37	55	49.5	8
A7	51.28	19	20	5.5
A8	48.16	56	52	3.5
A9	48.44	33	31	3
A10	53.64	13	15	4

>TRINITY_DN122544_c0_g5_i2 from sample A1 / Example spliced isoform

CTAAGGCAGTGAAGACAAATGGCAAGGCTTTGCTTTGCATACCATCAAATGAAAATAGATGATAATGGCATGCATATAGCAGGTCAAAGGAATTGCAGAAGGAAACTTTGACCATTTTCCGCCAGAAAGTGCCAAAAAGACTCTCTCTGGACCTCTTTTCTTCAAGTTTTCACTTCTAGTTATTGTAAGCCCTTAGATCC
ATAAAAAATGGATCAAAGAGGCATTCTTTTGAGCATTATTGTAAGATCTTTAAACGAGAGCAGTGGGATACCCGACGCCCACACTCCATCCCCTGGGGGGATTTGTATTTTTGTCAAATTTTCAAGTAAATCTTAGAAATAACACTACCTCGTTGCCACGAAGTATGCTCTCGCCACCACACAAAAGCTTTGTCAATTAG
TGGTGGATGATA

>TRINITY_DN122544_c0_g5_i1 from sample A1 / Example unspliced isoform:

CTAAGGCAGTGAAGACAAATGGCAAGGCTTTGCTTTGCATACCATCAAATGAAAATAGATGATAATGGCATGCATATAGCAGGTCAAAGGAATTGCAGAAGGAAACTTTGACCATTTTCCGCCAGAAAGTGCCAAAAAGACTCTCTCTGGACCTCTTTTCTTCAAGTTTTCACTTCTAGTTATTGTAAGCCCTTAGATCC
ATAAAAAATGGATCAAAGAGGCATTCTTTTGAGCATTATTGTAAGATCTTTAAACGAGAGCAGTGGGATACCCGACGCCCACACTCCATCCCCTGGGGGGATTTGTATTTTTGTCAAATTTTCgtgagtaactttttctatcttcacaactatcacacactcactttgaaagtgcagggtgtatactttaacttttattt
taataattttcattttcattttttcattttttcatttttacagAAGTAAATCTTAGAAATAACACTACCTCGTTGCCACGAAGTATGCTCTCGCCACCACACAAAAGCTTTGTCAATTAGTGGTGGATGATA

Intron 2 GTTTGTGCCT ... CCCCTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	58.57	3	3.5	5
A2	100	0	5.5	5
A3	77.38	1	6.5	1
A4	100	0	1.5	2
A5	40.66	4	1.5	4
A6	58.73	4	6.5	5
A7	100	0	3.5	0
A8	88.24	1	14	1
A9	100	0	2	0
A10	100	0	11.5	0

>TRINITY_DN40822_c3_g1_i3 from sample A6 / Example spliced isoform

GGATGATAAGAAAGTGACACAGGCACTTTGCAGGTTGTAGCCATTTTTTTTAATTTTTCACATATAAACTAATATTCACTTAATAAAAGTAACTACCTATCAACACAAGTGAAAATCCGACACTTCGAATTAATATTTGTGTGAAGAAATTCTTCAGAGGAAGTGGGAACAACTAGGAGGCGACCTCAAGGCACAATTAG
GCTATACCATAGTTTGGTATAGTGTTGAACACCACCTTAGAAACTCCATTCCAGCCCACACGTTCTCGTGAAGAGCCACCAAACTTTAATTTTCAGACCTTCCTCCCTGCACCTCACAAGTCCCCCTTTTTCCCTAATAAATTTCA

>TRINITY_DN40822_c3_g1_i2 from sample A6 / Example unspliced isoform:

TGGCAAGACCTTGCTTTGCATACCATCAAATGAAAATAGATGATAATGGCATGCATATAGCAGGTCAAAGGAATTGCAGAAGGAAACTTTGACCATTTTCCGCCAGAAAGTGCCAAAAAGACTCTCTCTGGACCTCTTTTCTTCAAGTTTTCACTTCTAGTTATTGTAAGCCCTTAGATCCATAAAAAATGGATCAAAGA
GGTATTCTTTTGAGCATTATTGTAAGATCTTTAAACGAGAGCAGTGGGATACAACGCCCACACTCCATCCCCTGGGGGGATTTGTATTTTTGTCAAATTTTCGTGAGTAACTTTTTCTATCTTCACAACTATCACACACTCACTTTGAAAGTGCAGGGTGTATACTTTAACTTTTATTTTAATAATTTTCATTTTCATTT
TTTCATTTTTTCATTTTTACAGAAGTAAATCTTAGAAATAACACTACCTCGTTGCCATGAAGTATGCTCTTGCCACCTCACAAAAGCTTTGTCAATTAGTGGTGGATGATAAGAAAGTGACACAGgtttgtgccttttgctttcatttaagttttgtacttcaatttgttctacaatacaattgttcaaaccataattta
tatttggtttataaccggagtacgcactttccccttgcagGCACTTTGCAGGTTGTAGCCATTTTTTTTAATTTTTCACATATAAACTAATATTCACTTAATAAAAGTAACTACCTATCAACACAAGTGAAAATCCGACACTTCGAATTAATATTTGTGTGAAGAAATTCTTCAGAGGAAGTGGGAACAACTAGGAGGCG
ACCTCAAGGCACAATTAGGCTATACCATAGTTTGGTATAGTGTTGAACACCACCTTAGAAACTCCATTCCAGCCCACACGTTCTCGTGAAGAGCCACCAAACTTTAATTTTCAGACCTTCCTCCCTGCACCTCACAAGTCCCCCTTTTTCCCTAATAAATTTCA