sp|Q7XII4|REM41_ORYSJ ----> Remorin 4.1
Intron 1 GTAATGATGA ... CAGTTATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 77.78 | 1 | 5 | 2 |
| A2 | 69.23 | 2 | 3 | 6 |
| A3 | 70 | 3 | 11 | 3 |
| A4 | 100 | 0 | 2 | 3 |
| A5 | 100 | 0 | 3 | 1 |
| A6 | 66.67 | 2 | 7 | 1 |
| A7 | 73.91 | 6 | 23 | 11 |
| A8 | 44.44 | 5 | 5 | 3 |
| A9 | 60 | 10 | 24 | 6 |
| A10 | 48.84 | 22 | 27 | 15 |
>TRINITY_DN41773_c0_g1_i5 from sample A10 / Example spliced isoformAGCGAAGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTCGGATCGACTGATGGAC
GCCGGCGCTTCGGGGCTTCACGTTCAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTTGGAATGCCATCCTCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCA
GCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACA
AGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATAAGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGA
ATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGAT
TCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCA
TGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGG
CTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCA
CTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATC
TCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTT
AACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATG
CAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCATTGTTTTCAATTTCTATTTCTAATGTG
>TRINITY_DN41773_c0_g1_i3 from sample A10 / Example unspliced isoform:AGCGAAGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTCGgtaatgatgatgcag
ataagatctcgggatcgaatatccaggcgatgtacttctggattttgcagcttatgttagcaatgaattgtccttttaaaaatgttatgttcaaacccttttgcacatggattttgcgaagctttgtgctcgtgcgtgctaaatttacagttattagGATCGACTGATGGACGCCGGCGCTTCGGGGCTTCACGTTCAGA
GACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTTGGAATGCCATCC
TCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTC
TTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATA
AGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAG
ATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTT
TAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGG
AAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGAT
TTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATAT
GGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTG
AGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAA
TGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACA
AAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCATTGTTTTCAATTTCTATTTCTAATGTG
Intron 2 GTAATGATGA ... TTTTGCGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75 | 1 | 5 | 1 |
| A2 | 66.67 | 2 | 3 | 5 |
| A3 | 70 | 3 | 11 | 3 |
| A4 | 100 | 0 | 2 | 4 |
| A5 | 100 | 0 | 3 | 0 |
| A6 | 69.23 | 2 | 7 | 2 |
| A7 | 72.73 | 6 | 23 | 9 |
| A8 | 52.94 | 4 | 5 | 4 |
| A9 | 65.96 | 8 | 24 | 7 |
| A10 | 52.38 | 20 | 27 | 17 |
>TRINITY_DN41773_c0_g1_i2 from sample A10 / Example spliced isoformAGCGAAGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTCGCTTTGTGCTCGTGCG
TGCTAAATTTACAGTTATTAGGATCGACTGATGGACGCCGGCGCTTCGGGGCTTCACGTTCAG
>TRINITY_DN41773_c0_g1_i3 from sample A10 / Example unspliced isoform:AGCGAAGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTCGgtaatgatgatgcag
ataagatctcgggatcgaatatccaggcgatgtacttctggattttgcagcttatgttagcaatgaattgtccttttaaaaatgttatgttcaaacccttttgcacatggattttgcgaagCTTTGTGCTCGTGCGTGCTAAATTTACAGTTATTAGGATCGACTGATGGACGCCGGCGCTTCGGGGCTTCACGTTCAGA
GACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTTGGAATGCCATCC
TCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTC
TTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATA
AGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAG
ATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTT
TAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGG
AAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGAT
TTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATAT
GGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTG
AGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAA
TGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACA
AAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCATTGTTTTCAATTTCTATTTCTAATGTG
Intron 3 GTAATTATAA ... CATTTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.42 | 3 | 8 | 5 |
| A2 | 68.42 | 3 | 8 | 5 |
| A3 | 73.33 | 4 | 8 | 14 |
| A4 | 75 | 2 | 6 | 6 |
| A5 | 55.56 | 4 | 6 | 4 |
| A6 | 52.94 | 4 | 1 | 8 |
| A7 | 71.43 | 6 | 13 | 17 |
| A8 | 59.18 | 10 | 21 | 8 |
| A9 | 66.1 | 10 | 27 | 12 |
| A10 | 45.83 | 26 | 22 | 22 |
>TRINITY_DN41773_c0_g1_i1 from sample A10 / Example spliced isoformAGCGAAGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTCGGTAATGATGATGCAG
ATAAGATCTCGGGATCGAATATCCAGGCGATGTACTTCTGGATTTTGCAGCTTATGTTAGCAATGAATTGTCCTTTTAAAAATGTTATGTTCAAACCCTTTTGCACATGGATTTTGCGAAGCTTTGTGCTCGTGCGTGCTAAATTTACAGTTATTAGGATCGACTGATGGACGCCGGCGCTTCGGGGCTTCACGTTCAGA
GACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTTGGAATGCCATCC
TCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTC
TTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAA
AACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTT
CCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTT
ACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGC
ATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTA
TAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCAC
GAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTC
TTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTC
CCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCATTGTTTTCAATTTCTATTTCTAATGTG
>TRINITY_DN41773_c0_g1_i4 from sample A10 / Example unspliced isoform:TATACTTTGAGATTCTTACCTACACCCGTTTGATTTGGATTTTCGTTTGATTGTTATGCTGAGTATCAGTAGTCATCTTATCAGACAATAAGAAAGCATTTTAAAGTTGGTATTTTGGGTTGGAATTTACAGATGTCATGTTGTGCAGCAAACAATACTTTTGAGCTTGAGTGGATATTTTAGTTTTCTAAGTTCTTGTT
ACTCCTCTCATGTTGACTCAGACCATTTTTTTTGAGATTATTAATCTGTAGTTGCCTTTCCTTTCACTTCTGATTGATTTGGAGTATGGATTGAAATTTCCTAATGAAAGTGAAGAGACTTTGAGTGCTAATGCTCTTTATTCTGTGGCGGAATGCACTTCAGAGACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTA
GATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTTGGAATGCCATCCTCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAA
AGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGT
TCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGgtaattataattatgtacaagcaatgcgaccctttgaagatgatggctttgattatggtggtggtcatgaaaatgccatcaatagttttgagttccacaaggggaataaggcatttcacagGTCTGTTTCAGGGTCACATTCCA
AACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACA
GTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGA
TACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAA
CTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTG
GGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGC
CTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATA
TTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCC
CAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTA
CCATTGTTTTCAATTTCTATTTCTAATGTG
Intron 4 GTAGTCATTA ... ATTCTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.04 | 10 | 1 | 2 |
| A2 | 33.33 | 3 | 1 | 2 |
| A3 | 15.38 | 11 | 0 | 4 |
| A4 | 4.35 | 11 | 0 | 1 |
| A5 | 27.27 | 4 | 1 | 2 |
| A6 | 15.79 | 8 | 0 | 3 |
| A7 | 17.65 | 35 | 6 | 9 |
| A8 | 29.41 | 18 | 11 | 4 |
| A9 | 20 | 22 | 9 | 2 |
| A10 | 7.89 | 35 | 3 | 3 |
>TRINITY_DN39798_c0_g1_i2 from sample A8 / Example spliced isoformAGTGTACAAAAGCGAAAGCTAAGGTCCCTCGTTTTTTGCTTTGTCCGTTTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTC
GGTAATGATGATGCAGATAAGATCTCGGGATCGAATATCCAGGCGATGTACTTCTGGATTTTGCAGCTTATGTTAGCAATGAATTGTCCTTTTAAAAATGTTATGTTCAAACCCTTTTGCACATGGATTTTGCGAAGCTTTGTGCTCGTGCGTGCTAAATTTACAGTTATTAGGATCGACTGATGGACGCCGGCGCTTCG
GGGCTTCACGTTCAGAGACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCA
GGTTGGAATGCCATCCTCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATATGGTAC
CTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAG
TTCCACAAGGGGAATAAGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCA
TCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATC
CCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATG
AGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGA
ATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAG
AGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCA
GAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATAT
TATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTC
TTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCATTGTTTTCAATTTCTATTTCTAATGTGGTCATATAAAGGATTTTACCATTGTTTTCACTTTCTATTTCTAATGTGGTCACTTATCATGCCATATTAAAAGGCATTTACAAACCAAAAGAGTCAGAAGGCATCCATCTCTTGGTGC
TTCTTAATGCAGGGCGATAAATTATTGAGCATTTTGTTTTGACTCTATCGGATCAGGATTAAAAGTAACACATTGGTTATCTAGTATGTCCCATGTGCCATTGGATAAGTAAGCTATAGGCCAAATAATGTGCCACATGTCAAAAGTTGGAGCATAATGTGGGAGCAAATAGGCTTCCATCAAGGAAATGAGATTCTAAA
TTGCATCATCAATTCTTTAACCATTATTGTTAGCGACATTAGACGAGGAAAGGTTTTGGCCACTTTATAGGCTTTCATTCTTGCTCCA
>TRINITY_DN39798_c0_g1_i4 from sample A8 / Example unspliced isoform:AGTGTACAAAAGCGAAAGCTAAGGTCCCTCGTTTTTTGCTTTGTCCGTTTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTC
GGTAATGATGATGCAGATAAGATCTCGGGATCGAATATCCAGGCGATGTACTTCTGGATTTTGCAGCTTATGTTAGCAATGAATTGTCCTTTTAAAAATGTTATGTTCAAACCCTTTTGCACATGGATTTTGCGAAGCTTTGTGCTCGTGCGTGCTAAATTTACAGTTATTAGGATCGACTGATGGACGCCGGCGCTTCG
GGGCTTCACGTTCAGAGACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCA
GgtagtcattacaattaatgctggaaagtacttaaggaatttgaagttaagattttagttcaagcttcaaatttttctgttataattataccttaccctctattaagtatagttcacaagcggagtttctgtctcaaaattctcatagGTTGGAATGCCATCCTCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAA
GAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATATGGTACCTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTT
CATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATAAGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAA
ACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAG
TCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGAT
ACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAAC
TGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGG
GTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCC
TGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATAT
TCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCC
AAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTAC
CATTGTTTTCAATTTCTATTTCTAATGTGGTCATATAAAGGATTTTACCATTGTTTTCACTTTCTATTTCTAATGTGGTCACTTATCATGCCATATTAAAAGGCATTTACAAACCAAAAGAGTCAGAAGGCATCCATCTCTTGGTGCTTCTTAATGCAGGGCGATAAATTATTGAGCATTTTGTTTTGACTCTATCGGAT
CAGGATTAAAAGTAACACATTGGTTATCTAGTATGTCCCATGTGCCATTGGATAAGTAAGCTATAGGCCAAATAATGTGCCACATGTCAAAAGTTGGAGCATAATGTGGGAGCAAATAGGCTTCCATCAAGGAAATGAGATTCTAAATTGCATCATCAATTCTTTAACCATTATTGTTAGCGACATTAGACGAGGAAAGG
TTTTGGCCACTTTATAGGCTTTCATTCTTGCTCCA
Intron 5 GTGAGTACAC ... TCTGATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 5 | 2 | 3 |
| A2 | 53.85 | 3 | 3 | 4 |
| A3 | 29.03 | 11 | 3 | 6 |
| A4 | 5.88 | 8 | 1 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 7.69 | 6 | 1 | 0 |
| A7 | 25.71 | 13 | 4 | 5 |
| A8 | 20 | 16 | 2 | 6 |
| A9 | 20.63 | 25 | 3 | 10 |
| A10 | 8.11 | 17 | 0 | 3 |
>TRINITY_DN97195_c0_g1_i1 from sample A2 / Example spliced isoformGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCACCCCAACTCTCGGTAATGATGATGCAGATAAGA
TCTCGGGATCGAATATCCAGGCGATGTACTTCTGGATTTTGCAGCTTATGTTAGCAATGAATTGTCCTTTTAAAAATGTTATGTTCAAACCCTTTTGCACATGGATTTTGCGAAGCTTTGTGCTCGTGCGTGCTAAATTTACAGTTATTAGGATCGACTGATGGACGCCGGCGCTTCGGGGCTTCACGTTCAGAGACTGC
GGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTGCAAAGAGAAAGCAAAAAT
ATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCA
GAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATAAGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTA
AATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGC
CATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTT
TCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCA
GAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGG
AAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCA
GAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGA
>TRINITY_DN97195_c0_g1_i3 from sample A2 / Example unspliced isoform:TGGATATTTTAGTTTTCTAAGTTCTTGTTACTCCTCTCATGTTGACTCAGACCATTTTTTTTGAGATTATTAATCTGTAGTTGCCTTTCCTTTCACTTCTGATTGATTTGGAGTATGGATTGAAATTTCCTAATGAAAGTGAAGAGACTTTGAGTGCTAATGCTCTTTATTCTGTGGCGGAATGCACTTCAGAGACTGCG
GCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAATGGACAATTTTCAGGTTGGAATGCCATCCTCTCATC
AATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTCTTTCAGG
GATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATAAGGCATT
TCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATG
TTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGA
GGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCAgtgagtacaccttcagcatgggaggaaattaaatatttaatttgctagctcttttgttgtttttcctgtttatgctcactcaactgggaatgaccatttcatgctttgtctc
tgacatcatgtatttggaaagctttgatgtggatgttcttacaaaattgtgcttcctctgatgcagTTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCT
TCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTAT
GGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAA
TACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCA
GACTATATTCGTAGA
Intron 6 GTAACTTTGG ... TTGTCTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.5 | 5 | 3 | 3 |
| A2 | 15.79 | 8 | 2 | 1 |
| A3 | 29.41 | 6 | 5 | 0 |
| A4 | 33.33 | 1 | 1 | 0 |
| A5 | 50 | 3 | 4 | 2 |
| A6 | 21.74 | 9 | 4 | 1 |
| A7 | 24.5 | 18.5 | 7 | 5 |
| A8 | 27.78 | 13 | 2 | 8 |
| A9 | 42.86 | 6 | 6 | 3 |
| A10 | 22.73 | 17 | 6 | 4 |
>TRINITY_DN41077_c1_g2_i4 from sample A9 / Example spliced isoformTTGTTTTTTTTCCCGGGCTCTTCTTATTGAGTCATTGTTTCTGTTTTTTTCCCTGGCTCTTCTCCTTCAGTTATTGTTTTAGTTTTTTGGCTTACTCATTTAATGTCGACTTCGTTATGGACCATTGTCTTTTATACTTTGAGATTCTTACCTACACCCGTTTGATTTGGATTTTCGTTTGATTGTTATGCTGAGTATCA
GTAGTCATCTTATCAGACAATAAGAAAGCATTTTAAAGTTGGTATTTTGGGTTGGAATTTACAGATGTCATGTTGTGCAGCAAACAATACTTTTGAGCTTGAGTGGATATTTTAGTTTTCTAAGTTCTTGTTACTCCTCTCATGTTGACTCAGACCATTTTTTTTGAGATTATTAATCTGTAGTTGCCTTTCCTTTCACT
TCTGATTGATTTGGAGTATGGATTGAAATTTCCTAATGAAAGTGAAGAGACTTTGAGTGCTAATGCTCTTTATTCTGTGGCGGAATGCACTTCAGAGACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAG
CTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGGACAATTTTCAGGTTGGAATGCCATCCTCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGCGGGATG
TTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTTTCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATT
ATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGGTGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATAAGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCAT
GTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACACTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAA
AATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTGGCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGA
GAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATATTCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCA
GGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATGAGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATC
TAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATCTGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAA
TGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATTACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTAT
CTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAACTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTAC
ATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGATATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCG
>TRINITY_DN41077_c1_g2_i6 from sample A9 / Example unspliced isoform:CAAAGATCTCAGTGTACAAAAGCGAAAGCGAAGGTCCCTCGTTTTTTGCTTTGTCCGTCTTTCTGCAGTGTGATTTCTCGGGACGAGAGCAGTGAAGCGAAGCGCGCGAGTATTAAGCGTACAGTGGGAATCCTATGATTTATAAACGCATTGTCCCACAAGCAGAATGTTGCAGGTGGAGGCAGCCGAGCTTATCGCAC
CCCAACTCTCGGTAATGATGATGCAGATAAGATCTCGGGATCGAATATCCAGGCGATGTACTTCTGGATTTTGCAGCTTATGTTAGCAATGAATTGTCCTTTTAAAAATGTTATGTTCAAACCCTTTTGCACATGGATTTTGCGAAGCTTTGTGCTCGTGCGTGCTAAATTTACAGTTATTAGGATCGACTGATGGACGC
CGGCGCTTCGGGGCTTCACGTTCAGAGACTGCGGCTTTTGAGCTAATAAGCCGTGGAGCCTAGATCTAGATTCAATGTGGAGCAAAATGGTGGCAAGTAGCGTGGTACAGAAAGTTCAGTGACAATGTAGCTAAATGATTCAATTCTGTGATTCTTCTGTGAAGGGAAGCTGTAAGAAGGAACGGATTACAAAACAGTGG
ACAATTTTCAGGTTGGAATGCCATCCTCTCATCAATTAATGGCTATTCCTCTTGAGGTGCAAAGAGAAAGCAAAAATATAGAAGTGGATGAACTAGCAGTCGTTGAAAACCTCAGTCACAAAGgtaactttggtttcttgtttgttgtgtactgtttgcattccaatttagttcaatataacttgtattaaagctggaag
tctcttggctttaaaaattctgtcgtgagcttacagtcagtgtcgttgacattgaaatattgatgtctcggatatttggatacatggcaacatgcttagaagagtcacatagtattgaagccaatggttatgttactttgtctgtagCGGGATGTTCATCAGCAACAACAAATTGTGGAAAAGACTCCTACACAGAGCTT
TCGTGTGATAAAGTTCTAGATTCAAATGTGGTACCTCAAAACATAGCTTCTTTCAGGGATGTCCAAATTAAAGAAAACCAGCGTGTTCATATGAAAGTGCAGAATCTGTCAAAGCCTACGATTGCACAGTTAGGGTATCAAGGTAATTATAATTATGTACAAGCAATGCGACCCTTTGAAGATGATGGCTTTGATTATGG
TGGTGGTCATGAAAATGCCATCAATAGTTTTGAGTTCCACAAGGGGAATAAGGCATTTCACAGGTCTGTTTCAGGGTCACATTCCAAACAAGCACCTTCTAAATGGGATGATGCAGAAAAATGGCTGGTGAGTCATTCTTCTGCAGATGGTCATGTCAAGAATAAATTAAAAACTGTTGCAGTTCAATCCCAAGTCAACA
CTACACGTTATTCAAGAAAGGGAAGCAGTTCTCATCAAATGGACTGCCAGATGAATGTTACAAAGGTTGAATTACCAAATGCTACAGTCATATTATCCAGCCATGCAGCTGTTCATGGAAGTGGCTTATACCAGGATGAAGGGGAAACAAAGAAAATTGATTCAAAGGTTTCCCTTGTGCAAACTGTCACAAATCCTGTG
GCAGAAAATTCAAATTACTTTCTGGATTACCATCCCATGGAGGATATCTTTAGTCGAGGTTCACATGATTTAAAGAAAATCAATGATACTGAAGCATTCTTTCAGACTTCACTTCGAAATGAAAAACCCTTTGCAGACCCAGCCATTGTTTTGAGAAAGCATGACTCCTTTACATCTCTACATAGTCCTGTATCATATAT
TCAAACACCTTTATCTGTCAGATCGGTTTCTATGAGAAACACGGGAACGGAAATGACCCCAATTGCTAGCCAAGAACCTTCTAGAACTGGAACTCCTATCAGAGCCAGCACGCCTATGATAAGAAGTCCTGTTTCTTCTCAACCATCTACTCCAGGAAGGGCTGCACCGGCATCCTCACCAACAGATGCAACAGAAAATG
AGCTCAGTGATAAAAAGGAAGTTAGAAATTCTGAATTTTCAGAGAAGGATTTGCATGCAAAGACTAGACGAGAAATTATGGTCGTGGGTGCACAGCTGGGGAAGGCTAACATTGCAGCCTGGTCGAGTCAAGAGGAAGAGGATCAAGATGCATCTAAATCACTGAAGACTATAACTTTTGAAGAAGCTAAGAAGAACATC
TGGGGATTTCGAGCTGCAGCATGGGAGGATGCAGAGCAGGCAAAATATATGGCCAGGTACAAAAGTGAAGCGATCAAAATACAAGCCTGGGAAAGTCACCAGAAAGCAAAAGCAGAATCTGAAATGAGGAGAATAGAGGTAAAAGTGGAAAGAATGAAATCTCATGCCCACGAGAAGCTATTTAACAAGTTAGCATCATT
ACAACGGCGGGTAGAGGAGAAACGTGCATCTGCAGAAGCTAAACAAATTGAGCAGGCTGCCAAAACTAAACAACAGGCAGACTATATTCGTAGAACTGGACACATACCTATCTCTTTCTTTCATCGTCTCTTCTGTTTTTAGGGCTATTGCTATCTATCTTAACTTTTGTCTTTCTTCAAGTTTTATTATGTTTTATGAA
CTGCAGATACAGTCGGTCTTTTGTTATTAAATATTATGGCAATGCTTCAATGTCCTTTCCTCCCAAGTTTTCTAATTTTTTCCTCCCAAGTTTTTCCAATTTAAGCTCTTTATGTAGCTGTGTATGGGCGTGGTCAATTTGCAACCTTCTCTACATACATGCAGATATCTCCCTGTTTTGAAAGCTTCTCTACATGTAGA
TATCTTAAAGCTTCTATGCAGTCAGATAGCTTTCTTAATATGATTTTACAAAACCTTATAATTTTGTCCAGGTATAAAGGATTTTACCG