NA ----> NA
Intron 1 GTAAAGTACT ... TGCTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.15 | 42 | 38 | 40 |
| A2 | 43.48 | 26 | 22 | 18 |
| A3 | 60.71 | 22 | 34 | 34 |
| A4 | 59.55 | 18 | 25 | 28 |
| A5 | 70.37 | 4 | 10 | 9 |
| A6 | 66.67 | 4 | 8 | 8 |
| A7 | 47.69 | 34 | 34 | 28 |
| A8 | 54.29 | 24 | 26 | 31 |
| A9 | 54.84 | 21 | 26 | 25 |
| A10 | 54.05 | 17 | 22 | 18 |
>TRINITY_DN44833_c0_g2_i9 from sample A8 / Example spliced isoformTTGTGGCCTAAATATCCCTGGTACAAAGATTAAAGATCTTTATTTCCTAGTTAGAACCACGAAAAGAAAATTATCTGTGGGAACACCCCATACTCCTGAGTATCGAAAGCAACAGTCCCAGAGAGTTGCTTTGCAAGAACAGCAGGATATCTGGATCATGCCAACCATTCAAGTATCCAATCTTCTTGATATGAAGATTG
CAGTGACATCAAGTGATCATTTAGAGACAAACTCAACAGACATATCTGAACATAGTGTCAATCATGCAATTGTTCAGAGTGGACAGAAAACATACATGTATGCAGATCTTAGTAAGCTATTTTTGACAGTAACTCTCTATGATCTGAGAGAGAGGAGCAGTCCAATAAATGCTGGTGATTGGGGGAAGTTTTCCCCCAAG
ACTAAAGGTGAAGTGCATGATCTTGATATAGAGTTGGATTTTGGGAATGGAAAACACTTTGCTATGTTGAGGTTATCCCGAGGAGATATGGGACTTTTAGAGGCTATCATTTATACACCATATGCACTTCGAAATTTCACTGATATGTCACTTATTTGCTGTGCCTCTAAACAGAAATCCTTCTCTCTGTGGAAAAGGAA
TGATAAACAGACTCCTGAATCAGGCGACAAAATTACTCTCAAACCTGAGTCCAGAATTTCATGGTTTGAGAAGTCTGACAAGATAGTCATTCAGAGAGCAGAAGAAAAAGCAATTATATCATTACTAGATTTGGAAAATTTCTCTGGTTTCATGGAAATTAGTTTAGTAGTTCAGGAAGAAACTGGTTTAAAGGACACAG
TGAAGCTTGGTATTAGTTCACAGTTATCGTCATCCAAGCGCTTGGAACCAACAAACACTATTTGTCTATTCCCAAGATACATTGTTGTGAATCAATCAAGTGAGAACATTTTTGTTTGTCAGTATCGAATGCAGGAAAATTTGACAGAACTCAGCCCTCGAAAAAAAGAAGCTATTCTTCATATGAAATTCTTGCCGGGT
GAAGAAAAATCTGTTGTCCCTGTTGATAACATTTTCAAGATGCAAAGAGTTTCAGGGACAGATTCCTTGTTATTTGTTCAATTTTCATTGAAAGAACCTGGATGGAACTGGTCTGGACGAATCTGTCCTGCTTCTTTGGGGCGTTTCTTTCTGAAAATGAGAAGTTGCTCAAATAGTAATGACAATTCTCAATCAAGAAG
ATCTCAGGAGAAAAGGCAAACACGTTTTGCAGTTGTTGATGTCAAAGAAGAAGGAAGTTCATTGATCATGCACTTTGACATGCAATCTCCTGAATTTTTACCATATCGAATAGATAACAGCCTCCCCAGTGCTTCCATTCATTTTCATCAAAAGGAGGTAACAGAAACAGATGTTTTGGAGCCTGGTGCCACTGTAGGTT
ATGTTTGGGATGACCTAAATTTACCACACATGCTAATTGTAGAAGTAGCAGGCACCCAACTTCAACGTGAAATAAGCTTAGACAAGTTGAGCCCATGTAAGCGTTTCCGTAAAATCAGGCAGAGTAGAGGAGTTGGCTGGCCACTTCTATCTGGTGACCATCTAGAAGGTATGGCACAGTATAGAGGTAATCATGAAAAA
TTGTCAGATGAAGTGGATTTTTCAAAGGTGGTCTATGAAGTTTATGCAGATGGGCCAACCAGAGTCTTGTGGGTTTATGAAGTGCATGACAGTCGCAAGAAAAGAGATTGGTTATCTCAAAATCGAATTCCATATGCCAAGATTGATTGTAAGGTTTCTCATCTGGGAATCAGCCTTCTTGAGCAAGGAAATCAGCAACT
GGAGATTCCAAATGTTAACGATCGCTACACTCCTATAATATTCATAAAATTCAGAAGCATAGAGCTAGAATTCATTATTGCAAGCAAGCATACATTATGCACCTTCAGTGTTCAGATGCTAGGAGTGGAAGAAAAGTGGGAAGGTGCTCCTTTTGCAGCAATGTTGAGGTTCCAGGGGCAGGACTACTTTGAAAGGAATG
AACCTGTGCTACACATGTTCCTTGTTGTTTCTAATCATACATCCAATCCCAACCAAACTGTTGATTTGCATCTTGATGAAGATACATTGATGAAGCTGGTGCCTTTCTACCGGACTTCTCGAGCTGACTCGGTCACTCCTCGTCGAGAGATTTATTTTGAGCACTTTGAAATCCACCCAATTAAGATTGTTGCAAGCTTT
CTTCCAGGACACCCTCATACAAATTATACATCAGCACAGGAAACATTGCGGGCATTTTTGCATTCTATAATAAAGATACCCACTGTTAAGGGCACTGTTGTGGAACTTAATGGTGTTCTTCTTTCACATGCATTGATGACATTCCATCAACTGGCCATCAAATGTGTTCAGCATTACTCATGGTACTTGATGAGGTCAAT
ATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTGTTTGATGACTCAGCATCTACATCTCTTGATTTTTTCATTGATCCATCTGATCATTCCGTTGATCTTCAAAATTTCACAAAAGGCATGATTAATCTGCTTAGAAAAGGCACTGGGAAGAGAAAATACTCTGGCACAAACCGCTATCTTGGAG
ATCTGGGACACACGATGAAGACAGCCTGGTCAAATGTCTTATTTGCTGCAATGAGAGAAGTCTCAGATAATGTTGTGAAGGGGGCTGAAACAAGCGGCATTGATGGAATGGTGAATGGTTTCCGTCGTGGCATATTAAAACTAGCTATGGAACCATCAGTATTAAGTACAGCCGCTGTCAAGGGTGGATCCACTTATCGA
ATTAAGCTTGAGCATAGTGCTAATATGGATGAGTTGTACATTGAAGGATATCTACAGGCAATGTTAGATGCTTTGTTTAGGCAGAACTATCTAAGAGTTAAGGTAGTTGATGACCAGGTGTTGCTAAAGAATTTACCTCCAAACAGTGTTCTGATTAACGAAATCAAACAATGCGTAAAGAACTTCCTTATTGGGGAAGG
TCTACTTGCAGGAGAATCCTCACAAGCTGTTAATTCTCTACGGAGACTTCACGGGGAATCTGAGTGGCAAGTTGTCCCCAAACTCAAGGCCGTATGTGAACAACTGTTTGTTATATTTGCAATTCGAGCATTACGAAGGCAAACAAAGAAACTTTTGCACACGAGTGACTCAAATGAGAAATCCACGGCTGAAGAACCAT
CTCAAAATCGTATGGAAGTGGCTCTTCCTAGGGCATCCAAATCTCACAAGGACGAAGAGGACATGGAACGGAAAAAACAAAGTCCAAGGCACGCAGTGGGTGGTTTCTTACTATCAAGCGCTGTCGCTTATATTGATGGAAGATTATGTCGTCGTATACCAAATGCTATTGTAAGGCGAATTGTAAGTGGATTTTTGCTA
AGTTTTGTCGAATAAAGTTCGTCATGCCTCATGATTATAATTGTAAGAATAATTCATTTCTTAGCCATCCCATGTTGTTCAGATGAAAAAAAAAACAATGGAATCGACTTAACTTCTGTATTCGTTCAATTCGTTTGCCTTCAGTTTGTGAAACTCCAGAATGAAGCATTTCAGTTTATCAATAAAGATCCCACCTTTAA
AAGTGGCATTTTAATTTGTTGGCCTCTATGGCTGTTTTTCGGATGAAACTGAAAGGATATAAAGGTACTTAATAGGGGGTATGGTGGCAACACTGTACTTCAGACGAATAAACTTTTAGATTTAGTGAGCTTTTTAAATAAATATGTTGAAAGGATAAAAATGATTAAATTGACTGAATTCATTTTTTTCTGTTTCAAAA
TATAAAAAAA
>TRINITY_DN44833_c0_g2_i4 from sample A8 / Example unspliced isoform:TTGTGGCCTAAATATCCCTGGTACAAAGATTAAAGATCTTTATTTCCTAGTTAGAACCACGAAAAGAAAATTATCTGTGGGAACACCCCATACTCCTGAGTATCGAAAGCAACAGTCCCAGAGAGTTGCTTTGCAAGAACAGCAGGATATCTGGATCATGCCAACCATTCAAGTATCCAATCTTCTTGATATGAAGATTG
CAGTGACATCAAGTGATCATTTAGAGACAAACTCAACAGACATATCTGAACATAGTGTCAATCATGCAATTGTTCAGAGTGGACAGAAAACATACATGTATGCAGATCTTAGTAAGCTATTTTTGACAGTAACTCTCTATGATCTGAGAGAGAGGAGCAGTCCAATAAATGCTGGTGATTGGGGGAAGTTTTCCCCCAAG
ACTAAAGGTGAAGTGCATGATCTTGATATAGAGTTGGATTTTGGGAATGGAAAACACTTTGCTATGTTGAGGTTATCCCGAGGAGATATGGGACTTTTAGAGGCTATCATTTATACACCATATGCACTTCGAAATTTCACTGATATGTCACTTATTTGCTGTGCCTCTAAACAGAAATCCTTCTCTCTGTGGAAAAGGAA
TGATAAACAGACTCCTGAATCAGGCGACAAAATTACTCTCAAACCTGAGTCCAGAATTTCATGGTTTGAGAAGTCTGACAAGATAGTCATTCAGAGAGCAGAAGAAAAAGCAATTATATCATTACTAGATTTGGAAAATTTCTCTGGTTTCATGGAAATTAGTTTAGTAGTTCAGGAAGAAACTGGTTTAAAGGACACAG
TGAAGCTTGGTATTAGTTCACAGTTATCGTCATCCAAGCGCTTGGAACCAACAAACACTATTTGTCTATTCCCAAGATACATTGTTGTGAATCAATCAAGTGAGAACATTTTTGTTTGTCAGTATCGAATGCAGGAAAATTTGACAGAACTCAGCCCTCGAAAAAAAGAAGCTATTCTTCATATGAAATTCTTGCCGGGT
GAAGAAAAATCTGTTGTCCCTGTTGATAACATTTTCAAGATGCAAAGAGTTTCAGGGACAGATTCCTTGTTATTTGTTCAATTTTCATTGAAAGAACCTGGATGGAACTGGTCTGGACGAATCTGTCCTGCTTCTTTGGGGCGTTTCTTTCTGAAAATGAGAAGTTGCTCAAATAGTAATGACAATTCTCAATCAAGAAG
ATCTCAGGAGAAAAGGCAAACACGTTTTGCAGTTGTTGATGTCAAAGAAGAAGGAAGTTCATTGATCATGCACTTTGACATGCAATCTCCTGAATTTTTACCATATCGAATAGATAACAGCCTCCCCAGTGCTTCCATTCATTTTCATCAAAAGGAGGTAACAGAAACAGATGTTTTGGAGCCTGGTGCCACTGTAGGTT
ATGTTTGGGATGACCTAAATTTACCACACATGCTAATTGTAGAAGTAGCAGGCACCCAACTTCAACGTGAAATAAGCTTAGACAAGTTGAGCCCATGTAAGCGTTTCCGTAAAATCAGGCAGAGTAGAGGAGTTGGCTGGCCACTTCTATCTGGTGACCATCTAGAAGGTATGGCACAGTATAGAGGTAATCATGAAAAA
TTGTCAGATGAAGTGGATTTTTCAAAGGTGGTCTATGAAGTTTATGCAGATGGGCCAACCAGAGTCTTGTGGGTTTATGAAGTGCATGACAGTCGCAAGAAAAGAGATTGGTTATCTCAAAATCGAATTCCATATGCCAAGATTGATTGTAAGGTTTCTCATCTGGGAATCAGCCTTCTTGAGCAAGGAAATCAGCAACT
GGAGATTCCAAATGTTAACGATCGCTACACTCCTATAATATTCATAAAATTCAGAAGCATAGAGCTAGAATTCATTATTGCAAGCAAGCATACATTATGCACCTTCAGTGTTCAGATGCTAGGAGTGGAAGAAAAGTGGGAAGGTGCTCCTTTTGCAGCAATGTTGAGGTTCCAGGGGCAGGACTACTTTGAAAGGAATG
AACCTGTGCTACACATGTTCCTTGTTGTTTCTAATCATACATCCAATCCCAACCAAgtaaagtactcatctgttgctctacagACTGTTGATTTGCATCTTGATGAAGATACATTGATGAAGCTGGTGCCTTTCTACCGGACTTCTCGAGCTGACTCGGTCACTCCTCGTCGAGAGATTTATTTTGAGCACTTTGAAATC
CACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCTCATACAAATTATACATCAGCACAGGAAACATTGCGGGCATTTTTGCATTCTATAATAAAGATACCCACTGTTAAGGGCACTGTTGTGGAACTTAATGGTGTTCTTCTTTCACATGCATTGATGACATTCCATCAACTGGCCATCAAATGTGTTCAGCA
TTACTCATGGTACTTGATGAGGTCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTGTTTGATGACTCAGCATCTACATCTCTTGATTTTTTCATTGATCCATCTGATCATTCCGTTGATCTTCAAAATTTCACAAAAGGCATGATTAATCTGCTTAGAAAAGGCACTGGGAAGAGAAAAT
ACTCTGGCACAAACCGCTATCTTGGAGATCTGGGACACACGATGAAGACAGCCTGGTCAAATGTCTTATTTGCTGCAATGAGAGAAGTCTCAGATAATGTTGTGAAGGGGGCTGAAACAAGCGGCATTGATGGAATGGTGAATGGTTTCCGTCGTGGCATATTAAAACTAGCTATGGAACCATCAGTATTAAGTACAGCC
GCTGTCAAGGGTGGATCCACTTATCGAATTAAGCTTGAGCATAGTGCTAATATGGATGAGTTGTACATTGAAGGATATCTACAGGCAATGTTAGATGCTTTGTTTAGGCAGAACTATCTAAGAGTTAAGGTAGTTGATGACCAGGTGTTGCTAAAGAATTTACCTCCAAACAGTGTTCTGATTAACGAAATCAAACAATG
CGTAAAGAACTTCCTTATTGGGGAAGGTCTACTTGCAGGAGAATCCTCACAAGCTGTTAATTCTCTACGGAGACTTCACGGGGAATCTGAGTGGCAAGTTGTCCCCAAACTCAAGGCCGTATGTGAACAACTGTTTGTTATATTTGCAATTCGAGCATTACGAAGGCAAACAAAGAAACTTTTGCACACGAGTGACTCAA
ATGAGAAATCCACGGCTGAAGAACCATCTCAAAATCGTATGGAAGTGGCTCTTCCTAGGGCATCCAAATCTCACAAGGACGAAGAGGACATGGAACGGAAAAAACAAAGTCCAAGGCACGCAGTGGGTGGTTTCTTACTATCAAGCGCTGTCGCTTATATTGATGGAAGATTATGTCGTCGTATACCAAATGCTATTGTA
AGGCGAATTGTAAGTGGATTTTTGCTAAGTTTTGTCGAATAAAGTTCGTCATGCCTCATGATTATAATTGTAAGAATAATTCATTTCTTAGCCATCCCATGTTGTTCAGATGAAAAAAAAAACAATGGAATCGACTTAACTTCTGTATTCGTTCAATTCGTTTGCCTTCAGTTTGTGAAACTCCAGAATGAAGCATTTCA
GTTTATCAATAAAGATCCCACCTTTAAAAGTGGCATTTTAATTTGTTGGCCTCTATGGCTGTTTTTCGGATGAAACTGAAAGGATATAAAGGTACTTAATAGGGGGTATGGTGGCAACACTGTACTTCAGACGAATAAACTTTTAGATTTAGTGAGCTTTTTAAATAAATATGTTGAAAGGATAAAAATGATTAAATTGA
CTGAATTCATTTTTTTCTGTTTCAAAATATAAAAAAA
Intron 2 GTGAATGGTT ... TATGGATGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.12 | 11 | 29 | 34 |
| A2 | 86.67 | 5 | 32 | 33 |
| A3 | 91.75 | 4 | 47 | 42 |
| A4 | 86.3 | 5 | 34 | 29 |
| A5 | 90.24 | 2 | 24 | 13 |
| A6 | 94.12 | 1 | 15 | 17 |
| A7 | 77.63 | 17 | 54 | 64 |
| A8 | 74.42 | 22 | 61 | 67 |
| A9 | 82.07 | 13 | 60 | 59 |
| A10 | 72.36 | 17 | 44 | 45 |
>TRINITY_DN44833_c0_g2_i3 from sample A8 / Example spliced isoformACTGTTGATTTGCATCTTGATGAAGATACATTGATGAAGCTGGTGCCTTTCTACCGGACTTCTCGAGCTGACTCGGTCACTCCTCGTCGAGAGATTTATTTTGAGCACTTTGAAATCCACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCTCATACAAATTATACATCAGCACAGGAAACATTGCGGGCATT
TTTGCATTCTATAATAAAGATACCCACTGTTAAGGGCACTGTTGTGGAACTTAATGGTGTTCTTCTTTCACATGCATTGATGACATTCCATCAACTGGCCATCAAATGTGTTCAGCATTACTCATGGTACTTGATGAGGTCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTGTTTGATG
ACTCAGCATCTACATCTCTTGATTTTTTCATTGATCCATCTGATCATTCCGTTGATCTTCAAAATTTCACAAAAGGCATGATTAATCTGCTTAGAAAAGGCACTGGGAAGAGAAAATACTCTGGCACAAACCGCTATCTTGGAGATCTGGGACACACGATGAAGACAGCCTGGTCAAATGTCTTATTTGCTGCAATGAGA
GAAGTCTCAGATAATGTTGTGAAGGGGGCTGAAACAAGCGGCATTGATGGAATGTTGTACATTGAAGGATATCTACAGGCAATGTTAGATGCTTTGTTTAGGCAGAACTATCTAAGAGTTAAGGTAGTTGATGACCAGGTGTTGCTAAAGAATTTACCTCCAAACAGTGTTCTGATTAACGAAATCAAACAATGCGTAAA
GAACTTCCTTATTGGGGAAGGTCTACTTGCAGGAGAATCCTCACAAGCTGTTAATTCTCTACGGAGACTTCACGGGGAATCTGAGTGGCAAGTTGTCCCCAAACTCAAGGCCGTATGTGAACAACTGTTTGTTATATTTGCAATTCGAGCATTACGAAGGCAAACAAAGAAACTTTTGCACACGAGTGACTCAAATGAGA
AATCCACGGCTGAAGAACCATCTCAAAATCGTATGGAAGTGGCTCTTCCTAGAGCATCCAAATCTGACAAGGACGAAGAGGACATGGAACGGAAAAAACAAAGTCCAAGGCACGCAGTGGGTGGTTTCTTACTATCAAGCGCTGTCGCTTATATTGATGGAAGATTATGTCGTCGTATACCAAATGCTATTGTAAGGCGA
ATTGTAAGTGGATTTTTGCTAAGTTTTGTCGAATAAAGTTCGTCATGCCTCATGATTATAATTGTAAGAATAATTCATTTCTTAGCCATCCCATGTTGTTCAGATGAAAAAAAAAACAATGGAATCGACTTAACTTCTGTATTCTTTCAATTCGTTTGACTTCAGTTTGTGAAACTCCAGAATGAAGCATTTCAGTTTAT
CAATAAAGATCCCACCTTTAAAAGTGGCATTTTAATTTGTTGGCCTCTATGGCTGTTTTTCGGATGAAACTGAAAGGATATAAAGGTACTTAATAGGGGGTATGGTGGCAACACTGTACTT
>TRINITY_DN44833_c0_g2_i4 from sample A8 / Example unspliced isoform:TTGTGGCCTAAATATCCCTGGTACAAAGATTAAAGATCTTTATTTCCTAGTTAGAACCACGAAAAGAAAATTATCTGTGGGAACACCCCATACTCCTGAGTATCGAAAGCAACAGTCCCAGAGAGTTGCTTTGCAAGAACAGCAGGATATCTGGATCATGCCAACCATTCAAGTATCCAATCTTCTTGATATGAAGATTG
CAGTGACATCAAGTGATCATTTAGAGACAAACTCAACAGACATATCTGAACATAGTGTCAATCATGCAATTGTTCAGAGTGGACAGAAAACATACATGTATGCAGATCTTAGTAAGCTATTTTTGACAGTAACTCTCTATGATCTGAGAGAGAGGAGCAGTCCAATAAATGCTGGTGATTGGGGGAAGTTTTCCCCCAAG
ACTAAAGGTGAAGTGCATGATCTTGATATAGAGTTGGATTTTGGGAATGGAAAACACTTTGCTATGTTGAGGTTATCCCGAGGAGATATGGGACTTTTAGAGGCTATCATTTATACACCATATGCACTTCGAAATTTCACTGATATGTCACTTATTTGCTGTGCCTCTAAACAGAAATCCTTCTCTCTGTGGAAAAGGAA
TGATAAACAGACTCCTGAATCAGGCGACAAAATTACTCTCAAACCTGAGTCCAGAATTTCATGGTTTGAGAAGTCTGACAAGATAGTCATTCAGAGAGCAGAAGAAAAAGCAATTATATCATTACTAGATTTGGAAAATTTCTCTGGTTTCATGGAAATTAGTTTAGTAGTTCAGGAAGAAACTGGTTTAAAGGACACAG
TGAAGCTTGGTATTAGTTCACAGTTATCGTCATCCAAGCGCTTGGAACCAACAAACACTATTTGTCTATTCCCAAGATACATTGTTGTGAATCAATCAAGTGAGAACATTTTTGTTTGTCAGTATCGAATGCAGGAAAATTTGACAGAACTCAGCCCTCGAAAAAAAGAAGCTATTCTTCATATGAAATTCTTGCCGGGT
GAAGAAAAATCTGTTGTCCCTGTTGATAACATTTTCAAGATGCAAAGAGTTTCAGGGACAGATTCCTTGTTATTTGTTCAATTTTCATTGAAAGAACCTGGATGGAACTGGTCTGGACGAATCTGTCCTGCTTCTTTGGGGCGTTTCTTTCTGAAAATGAGAAGTTGCTCAAATAGTAATGACAATTCTCAATCAAGAAG
ATCTCAGGAGAAAAGGCAAACACGTTTTGCAGTTGTTGATGTCAAAGAAGAAGGAAGTTCATTGATCATGCACTTTGACATGCAATCTCCTGAATTTTTACCATATCGAATAGATAACAGCCTCCCCAGTGCTTCCATTCATTTTCATCAAAAGGAGGTAACAGAAACAGATGTTTTGGAGCCTGGTGCCACTGTAGGTT
ATGTTTGGGATGACCTAAATTTACCACACATGCTAATTGTAGAAGTAGCAGGCACCCAACTTCAACGTGAAATAAGCTTAGACAAGTTGAGCCCATGTAAGCGTTTCCGTAAAATCAGGCAGAGTAGAGGAGTTGGCTGGCCACTTCTATCTGGTGACCATCTAGAAGGTATGGCACAGTATAGAGGTAATCATGAAAAA
TTGTCAGATGAAGTGGATTTTTCAAAGGTGGTCTATGAAGTTTATGCAGATGGGCCAACCAGAGTCTTGTGGGTTTATGAAGTGCATGACAGTCGCAAGAAAAGAGATTGGTTATCTCAAAATCGAATTCCATATGCCAAGATTGATTGTAAGGTTTCTCATCTGGGAATCAGCCTTCTTGAGCAAGGAAATCAGCAACT
GGAGATTCCAAATGTTAACGATCGCTACACTCCTATAATATTCATAAAATTCAGAAGCATAGAGCTAGAATTCATTATTGCAAGCAAGCATACATTATGCACCTTCAGTGTTCAGATGCTAGGAGTGGAAGAAAAGTGGGAAGGTGCTCCTTTTGCAGCAATGTTGAGGTTCCAGGGGCAGGACTACTTTGAAAGGAATG
AACCTGTGCTACACATGTTCCTTGTTGTTTCTAATCATACATCCAATCCCAACCAAGTAAAGTACTCATCTGTTGCTCTACAGACTGTTGATTTGCATCTTGATGAAGATACATTGATGAAGCTGGTGCCTTTCTACCGGACTTCTCGAGCTGACTCGGTCACTCCTCGTCGAGAGATTTATTTTGAGCACTTTGAAATC
CACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCTCATACAAATTATACATCAGCACAGGAAACATTGCGGGCATTTTTGCATTCTATAATAAAGATACCCACTGTTAAGGGCACTGTTGTGGAACTTAATGGTGTTCTTCTTTCACATGCATTGATGACATTCCATCAACTGGCCATCAAATGTGTTCAGCA
TTACTCATGGTACTTGATGAGGTCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTGTTTGATGACTCAGCATCTACATCTCTTGATTTTTTCATTGATCCATCTGATCATTCCGTTGATCTTCAAAATTTCACAAAAGGCATGATTAATCTGCTTAGAAAAGGCACTGGGAAGAGAAAAT
ACTCTGGCACAAACCGCTATCTTGGAGATCTGGGACACACGATGAAGACAGCCTGGTCAAATGTCTTATTTGCTGCAATGAGAGAAGTCTCAGATAATGTTGTGAAGGGGGCTGAAACAAGCGGCATTGATGGAATGgtgaatggtttccgtcgtggcatattaaaactagctatggaaccatcagtattaagtacagcc
gctgtcaagggtggatccacttatcgaattaagcttgagcatagtgctaatatggatgagTTGTACATTGAAGGATATCTACAGGCAATGTTAGATGCTTTGTTTAGGCAGAACTATCTAAGAGTTAAGGTAGTTGATGACCAGGTGTTGCTAAAGAATTTACCTCCAAACAGTGTTCTGATTAACGAAATCAAACAATG
CGTAAAGAACTTCCTTATTGGGGAAGGTCTACTTGCAGGAGAATCCTCACAAGCTGTTAATTCTCTACGGAGACTTCACGGGGAATCTGAGTGGCAAGTTGTCCCCAAACTCAAGGCCGTATGTGAACAACTGTTTGTTATATTTGCAATTCGAGCATTACGAAGGCAAACAAAGAAACTTTTGCACACGAGTGACTCAA
ATGAGAAATCCACGGCTGAAGAACCATCTCAAAATCGTATGGAAGTGGCTCTTCCTAGGGCATCCAAATCTCACAAGGACGAAGAGGACATGGAACGGAAAAAACAAAGTCCAAGGCACGCAGTGGGTGGTTTCTTACTATCAAGCGCTGTCGCTTATATTGATGGAAGATTATGTCGTCGTATACCAAATGCTATTGTA
AGGCGAATTGTAAGTGGATTTTTGCTAAGTTTTGTCGAATAAAGTTCGTCATGCCTCATGATTATAATTGTAAGAATAATTCATTTCTTAGCCATCCCATGTTGTTCAGATGAAAAAAAAAACAATGGAATCGACTTAACTTCTGTATTCGTTCAATTCGTTTGCCTTCAGTTTGTGAAACTCCAGAATGAAGCATTTCA
GTTTATCAATAAAGATCCCACCTTTAAAAGTGGCATTTTAATTTGTTGGCCTCTATGGCTGTTTTTCGGATGAAACTGAAAGGATATAAAGGTACTTAATAGGGGGTATGGTGGCAACACTGTACTTCAGACGAATAAACTTTTAGATTTAGTGAGCTTTTTAAATAAATATGTTGAAAGGATAAAAATGATTAAATTGA
CTGAATTCATTTTTTTCTGTTTCAAAATATAAAAAAA
Intron 3 GTATGGCACA ... GTTTATGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 79.59 | 10 | 29 | 49 |
| A2 | 64.86 | 13 | 19 | 29 |
| A3 | 81.82 | 5 | 25 | 20 |
| A4 | 86.67 | 4 | 30 | 22 |
| A5 | 60 | 7 | 8 | 13 |
| A6 | 73.33 | 2 | 6 | 5 |
| A7 | 66.67 | 9 | 16 | 20 |
| A8 | 76.19 | 5 | 13 | 19 |
| A9 | 69.23 | 6 | 13 | 14 |
| A10 | 81.25 | 6 | 29 | 23 |
>TRINITY_DN44125_c0_g2_i6 from sample A9 / Example spliced isoformGGAGTATCAGTACATTTAAAATCATGCTTTTGAGCTATGAAGCTCAAACAGATATGTGGATGGAAATGCTGCAGAAAGTTGAGATTTGCATTGTCTATCGTGCACGCCTTGTATCGTATGAGCAAAATGAAGTTGTTTTTGGAAAAACGCCAATTTCCTTTTACATTAGGTTAAAACAGGTAGATCTGTTTGTCAGGGAG
CCATCCTTAGACATTTGCCTTTTTCTATTTGGAGAATTGAATCTTGCTGGTCCTTATACCATAAAACATTCTCCGGTGACAGCTAATTGTTGCAAGGTTTTAAACAACACAGGTTTGAACCTTCTTTGTTGTTTTGATGATAACGTAGAGGCAAAGATTGCGGCATGGAATTCTGACTTGTTTCTTATAAGGCATATGCT
GTCAAGAAAAGACTCAGATCCAAAAAGTTCAACACATATGAGCTTTCAACTTGTCAAGTCTGGCATGGATTCATCACTTTCATCAACTCCAGTTTGCATATCTCTGCAAGAACTTGGAGTTATGGCCCTGAGAACACGCTTAGTGTCTGGACAATCCGAGAAGACAGCTCCTGGACCATTAGTTGTTGTTGATGTTTCCA
AACAAAATGAGGGTGGCCTCTCTGTTACCATTTCCCCCATGATATGTATACATAATGCAAGTGGTCTTTTACTAGAGTTGCGTTGTCGACGGCCACAACAAAGAGGGGATGATGGTGCGGCAGTTCTTCTCAAACATGGAGATATTATTGATGACTCAATAGGAGCCTTTGATGCTTTTGATTTTTCTGGTGAGAAGAAA
AAGGCATTGCTATCTTTTGGTCTAGGAAATTACCTTCTCTGTGTGAGGCCTGTAAATGATGAAACATCCCTTGTGGATGGTGAAAGACCCCCTTCCTTTGAGTGGTCGGATGATTTGAAAGGTGTAAAAGCTGTTCGTATTTCAGGACTCTTTGACAAATTAAGTCATCACATAAAGAAGACATTTTATGGTCAAACTGC
AGAGTGTTGCTTTAGCATGATTCATTGTGGCCTAAATATCCCTGGTACAAAGATTAAAGATCTTTATTTCCTAGTTAGAACCACGAAAAGAAAATTATCTGTGGGAACACCCCATACTCCTGAGTATCGAAAGCAACAGTCCCAGAGAGTTGCTTTGCAAGAACAGCAGGATATCTGGATCATGCCAACCATTCAAGTAT
CCAATCTTCTTGATATGAAGATTGCAGTGACATCAAGTGATCATTTAGAGACAAACTCAACAGACATATCTGAACATAGTGTCAATCATGCAATTGTTCAGAGTGGACAGAAAACATACATGTATGCAGATCTTAGTAAGCTATTTTTGACAGTAACTCTCTATGATCTGAGAGAGAGGAGCAGTCCAATAAATGCTGGT
GATTGGGGGAAGTTTTCCCCCAAGACTAAAGGTGAAGTGCATGATCTTGATATAGAGTTGGATTTTGGGAATGGAAAACACTTTGCTATGTTGAGGTTATCCCGAGGAGATATGGGACTTTTAGAGGCTATCATTTATACACCATATGCACTTCGAAATTTCACTGATATGTCACTTATTTGCTGTGCCTCTAAACAGAA
ATCCTTCTCTCTGTGGAAAAGGAATGATAAACAGACTCCTGAATCAGGCGACAAAATTACTCTCAAACCTGAGTCCAGAATTTCATGGTTTGAGAAGTCTGACAAGATAGTCATTCAGAGAGCAGAAGAAAAAGCAATTATATCATTACTAGATTTGGAAAATTTCTCTGGTTTCATGGAAATTAGTTTAGTAGTTCAGG
AAGAAACTGGTTTAAAGGACACAGTGAAGCTTGGTATTAGTTCACAGTTATCGTCATCCAAGCGCTTGGAACCAACAAACACTATTTGTCTATTCCCAAGATACATTGTTGTGAATCAATCAAGTGAGAACATTTTTGTTTGTCAGTATCGAATGCAGGAAAATTTGACAGAACTCAGCCCTCGAAAAAAAGAAGCTATT
CTTCATATGAAATTCTTGCCGGGTGAAGAAAAATCTGTTGTCCCTGTTGATAACATTTTCAAGATGCAAAGAGTTTCAGGGACAGATTCCTTGTTATTTGTTCAATTTTCATTGAAAGAACCTGGATGGAACTGGTCTGGACGAATCTGTCCTGCTTCTTTGGGGCGTTTCTTTCTGAAAATGAGAAGTTGCTCAAATAG
TAATGACAATTCTCAATCAAGAAGATCTCAGGAGAAAAGGCAAACACGTTTTGCAGTTGTTGATGTCAAAGAAGAAGGAAGTTCATTGATCATGCACTTTGACATGCAATCTCCTGAATTTTTACCATATCGAATAGATAACAGCCTCCCCAGTGCTTCCATTCATTTTCATCAAAAGGAGGTAACAGAAACAGATGTTT
TGGAGCCTGGTGCCACTGTAGGTTATGTTTGGGATGACCTAAATTTACCACACATGCTAATTGTAGAAGTAGCAGGCACTCAACTTCAACGTGAAATAAGCTTAGACAAGTTGAGCCCATGTAAGCGTTTCCGTAAAATCAGGCAGAGTAGAGGAGTTGGCTGGCCACTTCTATCTGGTGACCATCTAGAAGTGCATGAC
AGTCGCAAGAAAAGAGATTGGTTATCTCAAAATCGAATTCCATATGCCAAGATTGATTGTAAGGTTTCTCATCTGGGAATCAGCCTTCTTGAGCAAGGAAATCAGCAACTGGAGATTCCAAATGTTAACGATCGCTACACTCCTATAATATTCATAAAATTCAGAAGCATAGAGCTAGAATTCATTATTGCAAGCAAGCA
TACATTATGCACCTTCAGTGTTCAGATGCTAGGAGTGGAAGAAAAGTGGGAAGGTGCTCCTTTTGCAGCAATGTTGAGGTTCCAGGGGCAGGACTACTTTGAAAGGAATGAACCTGTGCTACACATGTTCCTTGTTGTTTCTAATCATACATCCAATCCCAACCAAGTAAAGTACTCATCTGTTGCTCTACAGACTGTTG
ATTTGCATCTTGATGAAGATACATTGATGAAGCTGGTGCCTTTCTACCGGACTTCTCGAGCTGACTCGGTCACTCCTCGTCGAGAGATTTATTTTGAGCACTTTGAAATCCACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCTCATACAAATTATACATCAGCACAGGAAACATTGCGGGCATTTTTGCAT
TCTATAATAAAGATACCCACTGTTAAGGGCACTGTTGTGGAACTTAATGGTGTTCTTCTTTCACATGCATTGATGACATTCCATCAACTGGCCATCAAATGTGTTCAGCATTACTCATGGTACTTGATGAGGTCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTGTTTGATGACTCAGC
ATCTACATCTCTTGATTTTTTCATTGATCCATCTGATCATTCCGTTGATCTTCAAAATTTCACAAAAGGCATGATTAATCTGCTTAGAAAAGGCACTGGGAAGAGAAAATACTCTGGCACAAACCGCTATCTTGGAGATCTGGGACACACGATGAAGACAGCCTGGTCAAATGTCTTATTTGCTGCAATGAGAGAAGTCT
CAGATAATGTTGTGAAGGGGGCTGAAACAAGCGGCATTGATGGAATGGTGAATGGTTTCCGTCGTGGCATATTAAAACTAGCTATGGAACCATCAGTATTAAGTACAGCCGCTGTCAAGGGTGGATCCACTTATCGAATTAAGCTTGAGCATAGTGCTAATATGGATGAGTTGTACATTGAAGGATATCTACAGGCAATG
TTAGATGCTTTGTTTAAGCAGAACTATCTAAGAGTTAAGGTAGTTGATGACCAGGTGTTGCTAAAGAATTTACCTCCAAACAGTGTTCTGATTAACGAAATCAAACAATGCGTAAAGAACTTCCTTATTGGGGAAGGTCTACTTGCAGGAGAATCCTCACAAGCTGTTAATTCTCTACGGAGACTTCACGGGGAATCTGA
GTGGCAAGTTGTCCCCAAACTCAAGGCCGTATGTGAACAACTGTTTGTTATATTTGCAATTCGAGCATTACGAAGGCAAACAAAGAAACTTTTGCACACGAGTGACTCAAATGAGAAATCCACGGCTGAAGAACCATCTCAAAATCGTATGGAAGTGGCTCTTCCTAGAGCATCCAAATCTGACAAGGACGAAGAGGACA
TGGAACGGAAAAAACAAAGTCCAAGGCACGCAGTGGGTGGTTTCTTACTATCAAGCGCTGTCGCTTATATTGATGGACGATTATGTCGTCGTATACCAAATGCTATTGTAAGGCGAATTGTAAGTGGATTTTTGCTAAGTTTTGTCGAATAAAGTTCGTCATGCCTCATGATTATAATTGTAAGAATAATTCATTTCTTA
GCCATCCCATGTTGTTCAGATGAAAAAAAAAACAATGGAATCGACTTAACTTCTGTATTCTTTCAATTCGTTTGACTTCAGTTTGTGAAACTCCAGAATGAAGCATTTCAGTTTATCAATAAAGATCCCACCTTTAAAAGTGGCATTTTAATTTGTTGGCCTCTATGGCTGTTTTTCGGATGAAACTGAAAGGATATAAA
GGTACTTAATAGGGGGTATGGTGGCAACACTGTACTT
>TRINITY_DN44125_c0_g2_i5 from sample A9 / Example unspliced isoform:GGAGTATCAGTACATTTAAAATCATGCTTTTGAGCTATGAAGCTCAAACAGATATGTGGATGGAAATGCTGCAGAAAGTTGAGATTTGCATTGTCTATCGTGCACGCCTTGTATCGTATGAGCAAAATGAAGTTGTTTTTGGAAAAACGCCAATTTCCTTTTACATTAGGTTAAAACAGGTAGATCTGTTTGTCAGGGAG
CCATCCTTAGACATTTGCCTTTTTCTATTTGGAGAATTGAATCTTGCTGGTCCTTATACCATAAAACATTCTCCGGTGACAGCTAATTGTTGCAAGGTTTTAAACAACACAGGTTTGAACCTTCTTTGTTGTTTTGATGATAACGTAGAGGCAAAGATTGCGGCATGGAATTCTGACTTGTTTCTTATAAGGCATATGCT
GTCAAGAAAAGACTCAGATCCAAAAAGTTCAACACATATGAGCTTTCAACTTGTCAAGTCTGGCATGGATTCATCACTTTCATCAACTCCAGTTTGCATATCTCTGCAAGAACTTGGAGTTATGGCCCTGAGAACACGCTTAGTGTCTGGACAATCCGAGAAGACAGCTCCTGGACCATTAGTTGTTGTTGATGTTTCCA
AACAAAATGAGGGTGGCCTCTCTGTTACCATTTCCCCCATGATATGTATACATAATGCAAGTGGTCTTTTACTAGAGTTGCGTTGTCGACGGCCACAACAAAGAGGGGATGATGGTGCGGCAGTTCTTCTCAAACATGGAGATATTATTGATGACTCAATAGGAGCCTTTGATGCTTTTGATTTTTCTGGTGAGAAGAAA
AAGGCATTGCTATCTTTTGGTCTAGGAAATTACCTTCTCTGTGTGAGGCCTGTAAATGATGAAACATCCCTTGTGGATGGTGAAAGACCCCCTTCCTTTGAGTGGTCGGATGATTTGAAAGGTGTAAAAGCTGTTCGTATTTCAGGACTCTTTGACAAATTAAGTCATCACATAAAGAAGACATTTTATGGTCAAACTGC
AGAGTGTTGCTTTAGCATGATTCATTGTGGCCTAAATATCCCTGGTACAAAGATTAAAGATCTTTATTTCCTAGTTAGAACCACGAAAAGAAAATTATCTGTGGGAACACCCCATACTCCTGAGTATCGAAAGCAACAGTCCCAGAGAGTTGCTTTGCAAGAACAGCAGGATATCTGGATCATGCCAACCATTCAAGTAT
CCAATCTTCTTGATATGAAGATTGCAGTGACATCAAGTGATCATTTAGAGACAAACTCAACAGACATATCTGAACATAGTGTCAATCATGCAATTGTTCAGAGTGGACAGAAAACATACATGTATGCAGATCTTAGTAAGCTATTTTTGACAGTAACTCTCTATGATCTGAGAGAGAGGAGCAGTCCAATAAATGCTGGT
GATTGGGGGAAGTTTTCCCCCAAGACTAAAGGTGAAGTGCATGATCTTGATATAGAGTTGGATTTTGGGAATGGAAAACACTTTGCTATGTTGAGGTTATCCCGAGGAGATATGGGACTTTTAGAGGCTATCATTTATACACCATATGCACTTCGAAATTTATACATTGTTGTGAATCAATCAAGTGAGAACATTTTTGT
TTGTCAGTATCGAATGCAGGAAAATTTGACAGAACTCAGCCCTCGAAAAAAAGAAGCTATTCTTCATATGAAATTCTTGCCGGGTGAAGAAAAATCTGTTGTCCCTGTTGATAACATTTTCAAGATGCAAAGAGTTTCAGGGACAGATTCCTTGTTATTTGTTCAATTTTCATTGAAAGAACCTGGATGGAACTGGTCTG
GACGAATCTGTCCTGCTTCTTTGGGGCGTTTCTTTCTGAAAATGAGAAGTTGCTCAAATAGTAATGACAATTCTCAATCAAGAAGATCTCAGGAGAAAAGGCAAACACGTTTTGCAGTTGTTGATGTCAAAGAAGAAGGAAGTTCATTGATCATGCACTTTGACATGCAATCTCCTGAATTTTTACCATATCGAATAGAT
AACAGCCTCCCCAGTGCTTCCATTCATTTTCATCAAAAGGAGGTAACAGAAACAGATGTTTTGGAGCCTGGTGCCACTGTAGGTTATGTTTGGGATGACCTAAATTTACCACACATGCTAATTGTAGAAGTAGCAGGCACTCAACTTCAACGTGAAATAAGCTTAGACAAGTTGAGCCCATGTAAGCGTTTCCGTAAAAT
CAGGCAGAGTAGAGGAGTTGGCTGGCCACTTCTATCTGGTGACCATCTAGAAGgtatggcacagtatagaggtaatcatgaaaaattgtcagatgaagtggatttttcaaaggtggtctatgaagtttatgcagatgggccaaccagagtcttgtgggtttatgaagTGCATGACAGTCGCAAGAAAAGAGATTGGTTAT
CTCAAAATCGAATTCCATATGCCAAGATTGATTGTAAGGTTTCTCATCTGGGAATCAGCCTTCTTGAGCAAGGAAATCAGCAACTGGAGATTCCAAATGTTAACGATCGCTACACTCCTATAATATTCATAAAATTCAGAAGCATAGAGCTAGAATTCATTATTGCAAGCAAGCATACATTATGCACCTTCAGTGTTCAG
ATGCTAGGAGTGGAAGAAAAGTGGGAAGGTGCTCCTTTTGCAGCAATGTTGAGGTTCCAGGGGCAGGACTACTTTGAAAGGAATGAACCTGTGCTACACATGTTCCTTGTTGTTTCTAATCATACATCCAATCCCAACCAAGTAAAGTACTCATCTGTTGCTCTACAGACTGTTGATTTGCATCTTGATGAAGATACATT
GATGAAGCTGGTGCCTTTCTACCGGACTTCTCGAGCTGACTCGGTCACTCCTCGTCGAGAGATTTATTTTGAGCACTTTGAAATCCACCCAATTAAGATTGTTGCAAGCTTTCTTCCAGGACACCCTCATACAAATTATACATCAGCACAGGAAACATTGCGGGCATTTTTGCATTCTATAATAAAGATACCCACTGTTA
AGGGCACTGTTGTGGAACTTAATGGTGTTCTTCTTTCACATGCATTGATGACATTCCATCAACTGGCCATCAAATGTGTTCAGCATTACTCATGGTACTTGATGAGGTCAATATATATTGCTAAAGGAAGTCAACTCTTACCACCTTCGTTTGTTTCTCTGTTTGATGACTCAGCATCTACATCTCTTGATTTTTTCATT
GATCCATCTGATCATTCCGTTGATCTTCAAAATTTCACAAAAGGCATGATTAATCTGCTTAGAAAAGGCACTGGGAAGAGAAAATACTCTGGCACAAACCGCTATCTTGGAGATCTGGGACACACGATGAAGACAGCCTGGTCAAATGTCTTATTTGCTGCAATGAGAGAAGTCTCAGATAATGTTGTGAAGGGGGCTGA
AACAAGCGGCATTGATGGAATGGTGAATGGTTTCCGTCGTGGCATATTAAAACTAGCTATGGAACCATCAGTATTAAGTACAGCCGCTGTCAAGGGTGGATCCACTTATCGAATTAAGCTTGAGCATAGTGCTAATATGGATGAGTTGTACATTGAAGGATATCTACAGGCAATGTTAGATGCTTTGTTTAAGCAGAACT
ATCTAAGAGTTAAGGTAGTTGATGACCAGGTGTTGCTAAAGAATTTACCTCCAAACAGTGTTCTGATTAACGAAATCAAACAATGCGTAAAGAACTTCCTTATTGGGGAAGGTCTACTTGCAGGAGAATCCTCACAAGCTGTTAATTCTCTACGGAGACTTCACGGGGAATCTGAGTGGCAAGTTGTCCCCAAACTCAAG
GCCGTATGTGAACAACTGTTTGTTATATTTGCAATTCGAGCATTACGAAGGCAAACAAAGAAACTTTTGCACACGAGTGACTCAAATGAGAAATCCACGGCTGAAGAACCATCTCAAAATCGTATGGAAGTGGCTCTTCCTAGAGCATCCAAATCTGACAAGGACGAAGAGGACATGGAACGGAAAAAACAAAGTCCAAG
GCACGCAGTGGGTGGTTTCTTACTATCAAGCGCTGTCGCTTATATTGATGGACGATTATGTCGTCGTATACCAAATGCTATTGTAAGGCGAATTGTAAGTGGATTTTTGCTAAGTTTTGTCGAATAAAGTTCGTCATGCCTCATGATTATAATTGTAAGAATAATTCATTTCTTAGCCATCCCATGTTGTTCAGATGAAA
AAAAAAACAATGGAATCGACTTAACTTCTGTATTCTTTCAATTCGTTTGACTTCAGTTTGTGAAACTCCAGAATGAAGCATTTCAGTTTATCAATAAAGATCCCACCTTTAAAAGTGGCATTTTAATTTGTTGGCCTCTATGGCTGTTTTTCGGATGAAACTGAAAGGATATAAAGGTACTTAATAGGGGGTATGGTGGC
AACACTGTACTT