sp|P51615|MAOX_VITVI ----> NADP-dependent malic enzyme
Intron 1 GTTTGACTTG ... TGTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.68 | 5927 | 53 | 1020 |
| A2 | 13.88 | 4617 | 58 | 744 |
| A3 | 13.3 | 5575 | 60 | 855 |
| A4 | 15.36 | 4281 | 33 | 777 |
| A5 | 14.61 | 2157 | 55 | 369 |
| A6 | 12.37 | 8308 | 115 | 1173 |
| A7 | 12 | 16864 | 192 | 2299 |
| A8 | 13.54 | 12780 | 112 | 2001 |
| A9 | 13.06 | 13069 | 148 | 1963 |
| A10 | 12.31 | 13564 | 129 | 1905 |
>TRINITY_DN48817_c1_g1_i9 from sample A7 / Example spliced isoformGCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGTCAGGCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGAGGATATGGTTGGTGGACTCTAAGGGACTCGTTGTGAAGTCAAGAATGGAGTCTCT
TCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGTCAATCAGGCCTACAATTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTG
AATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGCCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCC
TCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGAAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAAT
TTATCGGAATTACAAGTGAGATAAACTCTCACACCCCGAGCTAGATGCTAGCAAAGGAGTTCATGGTGTATTGATGAATAATGGGAGAGTAAATTTCTATTATGAGTTCCAAAAGTTGAAGGATTGTGAACTTAACTATGCCACTTATGGATATTGATGGGGAAGATATTTGAAATTAGAATTGAGAATGGAAGTTTGAA
ATATTTCATAACTTAACAATGTATATGGGTCAAGGTTCTTAGCGAATATGATTGAGAGAAAAAATATTAAAAGAAAGGAGAAGAAGGTAGTTGATGCCTTAATAAAAATAAGACACTTTTGGTCCTGGACTAAGGCCTAAAACTACTTTTGATTGGCTAAGAGCTTGTCTTCCTTAGATGTAAGGAAACATGTTAATGGC
CCTAGACTCGAAGGCATGTGGAAAGAGTGGAAGTTTTCCCCCTTATGGACCACCAGTGGGTTATTTCAGGTGGCGTGGTTTTCCTTGAATAATATTGATGAGTCAACTCACATTTCCAGATAGCAACCAATGTTGGATGTCCTTATTACCAATTCGACAACTGACTTATGAGAGGTTTTTCCATCTTCAAAAAAAATAAA
AAGATACTCAATAGTTATG
>TRINITY_DN48817_c1_g1_i6 from sample A7 / Example unspliced isoform:GACTCGTTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGgtttgacttgattctatatatggttttttagatatattttgttacatttatgaatgttttattttcccttctgataagttttaggaatcagcgcttatatat
tcttaggttttgttgtatgctagttccagcactctttcagaggaaatgaaaatatctgaagttttccttgttgtacagTCAATCAGGCCTACAATTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAAC
CTCTCAATCTGAATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGCATTAATGAAAAGACCTTTATTCCTGGCCAGTCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGCCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGC
TACTGGCAGCCTCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGAAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATG
TACAGTCCAATTTATCGGAATTACAAGTGAGATAAACTTTCTCACACCCAGAGCTGGGCAGAGATTGTTTGACGTTCAATTTAAACTGAAAAGTAGAACTGGGGTAATAAATGAGGAACAGTCTGCAAAATTATTTCAATATCAGTCTTTTGATGGCGATATAAAAGAATATATGCCATTCATTTTTTTACATGATGGAA
CAATTCAATTCCCTGTTCATTGAACGGAGGAACTTTACTTTTGCATTGCAATGGTACTACGAGATTGAACATTCCGACTTGTTGGGAATGAGCAAGTTGGATTTTGATTGTAAGTGTATTTTTTATATCTTAAAGTCATATATCCTTTTTATTGAAGTTAAACTTTTAAATTCTCATTCATATTATATAAAACAAATTTT
CTGATAAGTTTTTTAATTGATGTGACAGTAATTTTATTC
Intron 2 GTGAGATAAA ... CCCGAGCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.74 | 727 | 1113 | 446 |
| A2 | 50.59 | 521 | 775 | 292 |
| A3 | 50.35 | 630 | 933 | 345 |
| A4 | 52.93 | 397 | 629 | 264 |
| A5 | 53.6 | 206 | 337 | 139 |
| A6 | 50.41 | 1978 | 2902 | 1119 |
| A7 | 49.38 | 2893 | 4135 | 1510 |
| A8 | 50.5 | 3983 | 5836 | 2290 |
| A9 | 50.57 | 2531 | 3749 | 1429 |
| A10 | 48.87 | 2053 | 2897 | 1028 |
>TRINITY_DN48817_c1_g1_i8 from sample A7 / Example spliced isoformTCCAATAGTTAATAAAGGACCGAGTATTGAGTAATGCTGAACTCTGTTCTGCAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGTACAATGCTACTATCCCCTTGTACGTAAATTGCATTGAGGATGTTCCTGGTATTTTTATAGTTTCAA
TTTCTTAATCTCTGGGGAAATTTATAGGTCTCCTAGTAGGTATCACTGGTTTGATGATTGCTAACTATTTCAGATGCATAAATGATTGCAATGGACTCCTATCATTTGAAGACACAAATGAATGGAGGCGCTCCATTGTCAGATCTAAATTTACATACAATAAAACGAAGCACACAGATGAGCTCAAGAGAAATGGAATG
ACATATAATCTTTATTGTTGTAGCATGAATTCCTGAACACATTTATATCCTTGGTTGAAAGACAAAAATCTCGAAAAATAATGCATTTTAACTAGCCTGATTCAGGATCCTTTTCTCTCAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGCCA
ATAATGCATATATCTTCCCTGGATTGGGTTTAGCCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCCTCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGAAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGGAGTTGCTGCA
AAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAATTTATCGGAATTACAAATGCTAGCAAAGGAGTTCATGGTGTATTGATGAATAATGGGAGAGTAAATTTCTATTATGAGTTCCAAAAGTTGAAGGATTGTGAACTTAACTATGCCA
CTTATGGATATTGATGGGGAAGATATTTGAAATTAGAATTGAGAATGGAAGTTTGAAATATTTCATAACTTAACAATGTATATGGGTCAAGGTTCTTAGCGAATATGATTGAGAGAAAAAATATTAAAAGAAAGGAGAAGAAGGTAGTTGATGCCTTAATAAAAATAAGACACTTTTGGTCCTGGACTAAGGCCTAAAAC
TACTTTTGATTGGCTAAGAGCTTGTCTTCCTTAGATGTAAGGAAACATGTTAATGGCCCTAGACTCGAAGGCATGTGGAAAGAGTGGAAGTTTTCCCCCTTATGGACCACCAGTGGGTTATTTCAGGTGGCGTGGTTTTCCTTGAATAATATTGATGAGTCAACTCACATTTCCAGATAGCAACCAATGTTGGATGTCCT
TATTACCAATTCGACAACTGACTTATGAGAGGTTTTTCCATCTTCAAAAAAAATAAAAAGATACTCAATAGTTATG
>TRINITY_DN48817_c1_g1_i9 from sample A7 / Example unspliced isoform:GCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGTCAGGCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGAGGATATGGTTGGTGGACTCTAAGGGACTCGTTGTGAAGTCAAGAATGGAGTCTCT
TCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGTCAATCAGGCCTACAATTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTG
AATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGCCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCC
TCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGAAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAAT
TTATCGGAATTACAAgtgagataaactctcacaccccgagctagATGCTAGCAAAGGAGTTCATGGTGTATTGATGAATAATGGGAGAGTAAATTTCTATTATGAGTTCCAAAAGTTGAAGGATTGTGAACTTAACTATGCCACTTATGGATATTGATGGGGAAGATATTTGAAATTAGAATTGAGAATGGAAGTTTGAA
ATATTTCATAACTTAACAATGTATATGGGTCAAGGTTCTTAGCGAATATGATTGAGAGAAAAAATATTAAAAGAAAGGAGAAGAAGGTAGTTGATGCCTTAATAAAAATAAGACACTTTTGGTCCTGGACTAAGGCCTAAAACTACTTTTGATTGGCTAAGAGCTTGTCTTCCTTAGATGTAAGGAAACATGTTAATGGC
CCTAGACTCGAAGGCATGTGGAAAGAGTGGAAGTTTTCCCCCTTATGGACCACCAGTGGGTTATTTCAGGTGGCGTGGTTTTCCTTGAATAATATTGATGAGTCAACTCACATTTCCAGATAGCAACCAATGTTGGATGTCCTTATTACCAATTCGACAACTGACTTATGAGAGGTTTTTCCATCTTCAAAAAAAATAAA
AAGATACTCAATAGTTATG
Intron 3 GTACAATGCT ... TTTCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 9.52 | 4705.4 | 173.3 | 527.2 |
| A2 | 9.84 | 3046.3 | 129.1 | 353.5 |
| A3 | 10.45 | 3653.8 | 137.4 | 456.7 |
| A4 | 10.19 | 3274.3 | 119.1 | 398.1 |
| A5 | 10.68 | 1396.1 | 49.5 | 179.8 |
| A6 | 11 | 6084.8 | 206.6 | 815.8 |
| A7 | 11.27 | 10206.4 | 355.6 | 1403.8 |
| A8 | 11.03 | 10344.9 | 324.1 | 1393.9 |
| A9 | 10.73 | 8971.7 | 321 | 1165 |
| A10 | 10.59 | 8103.6 | 282.3 | 1032.4 |
>TRINITY_DN114757_c0_g1_i3 from sample A3 / Example spliced isoformGCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGAGGATATGGTTGGTGGACTCTAAGGGACTCATTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAA
GTCAATCAGGCCTACAGTTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAATCCAATAGTTAATAAAGGACCGAGTATTGAGTAATGCTGAACTCTGTTCTGCAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGC
AGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGCATTAATGAAAAGACCTTTATTCCTGGCCAGTCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGGCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCCTCTGAGGCTT
TAGCTCAACAAGTTACCAAAGAGCATCTCGAGCAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGCAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAATTTATCGGAAT
TACAAGTGAGATAAACTTTCTCACACCCAGAGCTGGGCAGAGATTGTTTGACGTTCAATTTAAACTGAAAAGTAGAACTGGGGTAATAAATGAGGAACAGTCTGCAAAATTATTTCAATATCAGTCTTTTGATGGCGATATAAAAGAATATATGCCATTCATTTTTTTACATGATGGAACAATTCAATTCCCTGTTCATT
GAACGGAGGAACTTTAATTTTGCATTGCAATGGTACTACGAGATTGAACATTCCGACTTGTTGGGAATGAGCAAGTTGGATTTGGATTGTAAGTGTATTTTTTATATCTTAAAGTCATATATCCTTTTTATTGAAGTTAAACTTTTAAATTCTCATTCATATTATATAAAACAAATTTTCTGATAAAAAAAA
>TRINITY_DN114757_c0_g1_i6 from sample A3 / Example unspliced isoform:GCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGAGGATATGGTTGGTGGACTCTAAGGGACTCATTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAA
GTCAATCAGGCCTACAGTTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAATCCAATAGTTAATAAAGGACCGAGTATTGAGTAATGCTGAACTCTGTTCTGCAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGC
AGAAGAAGCATACACCTGGAGTAAGgtacaatgctactatccccttgtacgtaaattgcattgaggatgttgctggtatttttatagtttcaatttcttaatctctggggaaatttataggtctcctagtaggtatcactggtttgatgattgctaactatttcagatgcataaatgattgcaatggactcctatcattt
ggagacacaaatgaatggaggcgctccattgtcagatctaaatttacatacaataaaacgaagcacacagatgagctcaagagaaatggaatgacatataatctttattgttgtagcatgaattcctgaacacatttatatccttggttgaaagacaaaaatctcgaaaaataatgcattttaactagcctgattcaggg
ttcttttctctcagGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGTTGCCCATTCCTCCCTACTAAATCCTCAGAATTCCTTTCTAAAGCTAGTAAAAAAATTATGCACGTGTGATTTGCTTATGAAAGAGTTTTAGTTTTAGTGTTTTCTAATC
AATTCATTGAATTTGATTGTATTACTGAATGGCTGCCCCTTGTGTTTTAACTTTTCTAATTTCAATAGGATTGAATGGCTTAACCATTTGCTACCTTGCATGAGCAGCTTTGGAG
Intron 4 GTTTGACTTG ... TGTTGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.73 | 5820.5 | 176.5 | 192.5 |
| A2 | 3.17 | 4537.3 | 160.3 | 142.3 |
| A3 | 3.12 | 5485.7 | 192.7 | 165.8 |
| A4 | 2.49 | 4195.2 | 115.7 | 145.5 |
| A5 | 4.34 | 2118 | 101 | 65.8 |
| A6 | 3.44 | 8192.3 | 314.8 | 208.8 |
| A7 | 3.27 | 16625.5 | 614 | 430.3 |
| A8 | 2.88 | 12573.2 | 407.7 | 378.2 |
| A9 | 3.22 | 12869.5 | 466.5 | 370.3 |
| A10 | 3.12 | 13357.5 | 473.5 | 344.3 |
>TRINITY_DN114757_c0_g1_i2 from sample A3 / Example spliced isoformGCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGAGGATATGGTTGGTGGACTCTAAGGGACTCGTTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAA
GTCAATCAGGCCTACAATTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCAT
TTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGGCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCCTCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGCAAGGGCTCATCTATCCACCATTT
CGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGCAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAATTTATCGGAATTACAAATGAGATAAACTGTCTCACACCCCGAGCTAGGTAGAGATTGCTTGACGTTC
CATTTAACTGAAAAGTAGAACAAGGGTAGTAAACGAGGAACAGCCTGCAAAACTATTTCAATATCAGTCTTTTGATGGCTATATAAAACAATATATGCCATTCATTTTTTTACATGATGGAACAATTCAATTCCCTGTTCATTGAACGGAGGAACTTTAATTTTGCATTGCAATGGTACTACGAGATTGAACATTCCGAA
TTTTTGGGAATGAGCAAGTTGGATTTGGATTGTAAGTGTACGTTTTTATATTTTAAAGTCATATGTCCTTTTATTGAAGTTAAATTTTAAATTCTCATTCATATATATAAAACAATTTTTCTAAAAA
>TRINITY_DN114757_c0_g1_i7 from sample A3 / Example unspliced isoform:GCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGAGGATATGGGACTCGTTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGgtttgacttgattct
atatatggttttttagatatattttgttacatttatgaatgttttattttcccttctgataagttttaggaatcagcgcttatatattcttaggttttgttgcatgctagttccagcactctttcagaggaaatgcaaagtatctgaagttttccttgttgtacagTCAATCAGGCCTACAGTTTTGATTGGTTCATCAG
GAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATT
CCTGGCCAGGCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGGCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCCTCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGCAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGC
AGCAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAATTTATCGGAATTACAAATGAGATAAACTGTCTCACACCCCGAGCTAGGTAGAGATTGCTTGACGTTCCATTTAACTGAAAAGTAGAACAAGGGTAGTAAACG
AGGAACAGCCTGCAAAACTATTTCAATATCAGTCTTTTGATGGCTATATAAAACAATATATGCCATTCATTTTTTTACATGATGGAACAATTCAATTCCCTGTTCATTGAACGGAGGAACTTTAATTTTGCATTGCAATGGTACTACGAGATTGAACATTCCGAATTTTTGGGAATGAGCAAGTTGGATTTGGATTGTAA
GTGTACGTTTTTATATTTTAAAGTCATATGTCCTTTTATTGAAGTTAAATTTTAAATTCTCATTCATATATATAAAACAATTTTTCTAAAAA
Intron 5 GCCTCTCTCT ... GAATTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.78 | 6762 | 8 | 1995 |
| A2 | 22.6 | 5458 | 2 | 1594 |
| A3 | 23.65 | 6578 | 19 | 2038 |
| A4 | 22.49 | 4714 | 4 | 1368 |
| A5 | 23.27 | 2480 | 0 | 752 |
| A6 | 25.63 | 8696 | 10 | 2997 |
| A7 | 26.48 | 18205 | 40 | 6557 |
| A8 | 26.15 | 12509 | 21 | 4430 |
| A9 | 24.8 | 13976 | 19 | 4609 |
| A10 | 25.7 | 15204 | 16 | 5258 |
>TRINITY_DN112423_c0_g3_i4 from sample A5 / Example spliced isoformGGTCTTCAATGATGATATTCAGGGAACAGCTTCAGTGGTGCTTTCAGGCCTTGTTGCATCATTAAAGTTGACTGGTGGAACATTGGCTGACCACACCTTCCTGTTCCTTGGGGCTGGTCAGGCAGGGACAGGTATTGCAGAGCTTATAGCACTAGAAATGACTAAACAGGGTAAAATCTCATTGAATGAAGCTCGCAAGA
GGATATGGTTGGTGGACTCTAAGGGACTCGTTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGCACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGTCAATCAGGCCTACAATTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCC
TCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGCAGAAGAAGCATACACCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGCCAATAATGCATATATCTTCCCTGGATTGGGTTT
AGCCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCCTCTGAGGCTTTAGCTCAACAAGTTACCAAAGAGCATCTCGAGCAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCC
TTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAATTTATCGGAATTACAAGTGAGATAAACTTTCTCACACCCAGAGCTGGGCAGAGATTGTTTGACGTTCAATTTAAACTGAAAAGTAGAACTGGGGTAATAAATGAGGAACAGTCTGCAAAATTATTTCAATATCAGTCTTTTGATGG
CGATATAAAAGAATATATGCCATTCATTTTTTTACATGATGGAACAATTCAATTCCCTGTTCATTGAACGGAGGAACTTTAATTTTGCATTGCAATGGTACTACGAGATTGAACATTCCGACTTGTTGGGAATGAGCAAGTTGGATTTGGATTGTAAGTGTACGTTTTTATATTTTAAAGTCATATGTCCA
>TRINITY_DN112423_c0_g3_i5 from sample A5 / Example unspliced isoform:GATATGGTTGGTGGACTCTAAGgcctctctctctctctctcgctctctctctctcacacacacacacacgctgtcacgcacgcatgcacacaaacactcacattttcatgatacacaaacggagaaacttgcatttccttctattgggttccttgctgcttcacaaattaccacgttctgaatgcaagttatttgagttc
aatccaatttttgattgcctctgttctcacttctcattgtttgggaggggaaattttaccattggagctgttcatcatttgcctacttagcagaactattagagtggaagtatggttttacaagctaatttttagaattaacagGGACTCGTTGTGAAGTCAAGAATGGAGTCTCTTCAACACTTCAAGAAACCATGGGC
ACATGAGCATGAACCCTGCAAAGGATTATTGGATGCTGTGAAGTCAATCAGGCCTACAATTTTGATTGGTTCATCAGGAGTTGGAAGAACTTTCACAAAGGAAGTGATTGAAGCTGTTTCCTCTTTCAATGAGAAGCCGGTTATTTTGGCCCTTTCTAATCCAACCTCTCAATCTGAATGTACGGCAGAAGAAGCATACA
CCTGGAGTAAGGGCCGTGCAATATTTGCAAGTGGGAGTCCATTTGATCCTGTCAGTATTAATGGAAAGACCTTTATTCCTGGCCAGGCCAATAATGCATATATCTTCCCTGGATTGGGTTTAGCCTTGGTAATTTCAGGAACAATCCGTGTGCATGAAGATATGCTACTGGCAGCCTCTGAGGCTTTAGCTCAACAAGTT
ACCAAAGAGCATCTCGAGCAAGGGCTCATCTATCCACCATTTCGAAATATCAGAAAAATATCAGCCCACATAGCAGCAGGAGTTGCTGCAAAATCCTATGAATTAGGTTTGGCAACATGCCTTCCTCGTCCTGCAGATCTGGTAGCCTTTGCTGAAAGCTGTATGTACAGTCCAATTTATCGGAATTACAAGTGAGATAA
ACTTTCTCACACCCAGAGCTGGGCAGAGATTGTTTGACGTTCAATTTAAACTGAAAAGTAGAACTGGGGTAATAAATGAGGAACAGTCTGCAAAATTATTTCAATATCAGTCTTTTGATGGCGATATAAAAGAATATATGCCATTCATTTTTTTACATGATGGAACAATTCAATTCCCTGTTCATTGAACGGAGGAACTT
TAATTTTGCATTGCAATGGTACTACGAGATTGAACATTCCGACTTGTTGGGAATGAGCAAGTTGGATTTGGATTGTAAGTGTACGTTTTTATATTTTAAAGTCATATGTCCA