sp|Q9SJ02|STEP2_ARATH ----> Stress enhanced protein 2, chloroplastic
Intron 1 GTAATTAAAT ... GGGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.94 | 57 | 0 | 7 |
| A2 | 11.84 | 67 | 0 | 9 |
| A3 | 12.77 | 41 | 0 | 6 |
| A4 | 6.41 | 73 | 0 | 5 |
| A5 | 14.29 | 30 | 0 | 5 |
| A6 | 14.73 | 712 | 4 | 123 |
| A7 | 15.93 | 533 | 0 | 101 |
| A8 | 16.61 | 532 | 0 | 106 |
| A9 | 14.47 | 526 | 0 | 89 |
| A10 | 12.04 | 453 | 0 | 62 |
>TRINITY_DN37773_c0_g1_i2 from sample A6 / Example spliced isoformTAAAAATAGATACATTATTTTCGTTTATTTTGTGAAAAATCAGCTTTATCTGTGTCACAAACCTGTGGTTATATCACTTGAAATTTTGGTCATATGATTCTTGTTCACAAACAAACAAACATCACATTTACAAAATTGGAAAAAGTGTGGTGTGTTGTGGTTGGAGAACATGGAAAACTGCTGTTTCTTGGCCGTGAATC
GTTTATCAGAGACGTGTCCGAGTGACTGACCATGTAATCCCCAATACAAATAAATAAATAAAAGATTCGAGAGCGAGGGCAATCTGGTTGGCTACTTGTAAGCAGAATCCTTGCCTTGGCCTTTGATTCAGAATATTCAGAGCAGAGCAATGACAATGGCAATGGGAATAACAATAAGAATGACCGGGAATATTCCAGAG
TCCCAGCATCTTCCTCCAAAACGGAATCTGGAATACAGTGTTAATGTACCGCCCAAAACTTCGACCCTCATTCTCAGGAAGAGGAAGAGGATGATGAAGATGCGTGCATTAGCAGACGACAATAAGGATTCCAAGGTTGTGCTTCCACCCCGCCTGTGTACTCTCAGGGCTTTCGCTGAAAGTGGAGATAATGTTGTTCA
AGCCGATCTCGAGCCCGACAGAATGCCAAGTTTCTTCAATTCCCTCGCCGCCAGTATCGACCATGCAGCCAAATTCAAAGACTGGGAAATTCTGTCGGGTCGTTTGGCAATGATCGTTTTTGCGGCAGCCATCAACGTGGAGCTGTTGACGGGAAATTCTCTGTTTCACAAGATGGACGTGCAAAAGATCTGCGAGTTTG
GGGGAGTCTGCATGGCTTCCATTGTAGGCGCTGCTGGATTCGCATGGGCATCATGTGCTAAAACACGAGTCGGCGACGTCTTTTCTGAGCGATATAACAAATTTGTTGACACTGTCATCGATCAGTTAGTTGACGGACTTTTCTACGAAGAAGAGTAGTGTTGACACAGCTTCAAGATTTAAATCTACACTGTACAGTGA
CCATTATTAGCTTGGAGAGGTAAAATAGAATACCATGAATTTATGTTTATGGCGAATTTTATGGAAAATTTTGTATATATAGAAATAATAATTGGAGATTCAGCTGAAGATCCCCATTTGGGCATTGTTTAGAGAATGAATCCTTGGTATACCTTATTTGGGATGTTTGAGAGGGTTCAGACTCCAGAATATTTTAGGGT
AAATCCACACTCCTGAACCTTACCTTCCAGAAACCTGTTTTTGGGTTCAGATTCAAGATATTTTAGGGTAAATTCACACTCCTGAACCCTACGTTGCCAGAAACCTGTTTTTGGTTTCGTTTGCAGCGCCGTTCTATTTCCCATCCCATCCCCGTCTTGAGAGTGCATTGATTTGGATTAAAACTCCTGGATTGTGTCTC
CTCTGGCGCTCTCAGGCAGAACCATGATAGGTTGCATTAATGCATTTTTTGAATACTCTAAATACCCTTTTCTTTTTGGCCAGATAGGGGTCTATTTCCATTGGGACATGTCGCGGGGATTCTCTCGTAGAGCCCGGAGACAGAATGCAAGGAGAATCGAACCTCCCTAAATCACAGCCAAATGGACATTGCAGGGTGCA
TTAATATATTTATATTTAGTTACTCTCCTTTCTTATTATGTATTTGTCTGAAGTAGGAGTATATTTCCCACCTGGCCCAATTGATATGTTACTACGAGAACTCCCAGGTAGATGCCATAAGCATCATCCGCTGGGAATCCAAGGTAAGCTCCCACTAATTTACAGCTTCAGCATAGCTCAAGGTGCATTAATACATTATT
AATCAATTTTATATGCATTATTTATAATATGCTTGACAAAGGATTTTGTATGCACAATTTATAATATGCTTGGCAAGGGATGCCCTGTCCTTTGCGCCCTTTCTGGCTTGTGGTTTGCTATCCATATCCATGTGATGTGGGTAATTTTAAGCTATTACTTCAATCGCATATCTCTATGATGTAATCTCGTTCCACATTGG
TACTTCCTTCCTATCCACAA
>TRINITY_DN37773_c0_g1_i1 from sample A6 / Example unspliced isoform:CTGGGAAATTCTGACGGGTCGTTTGGCAATGgtaattaaatcctcctgataatctgattctaattttcgtcaattaattaacattcgtttgcctgggtgcgctcatgctgtcaatttcttatgggtttgcagATCGTTTTTGCGGCAGCCATCAACGTGGAGCTGTTGACGGGAAATTCTCTGTTTCACAAGATGGACGT
GCAAAAGATCTGCGAGTTTGGGGGAGTCTGCATGGCTTCCATTGTAGGCGCTGCTGGATTCGCATGGGCATCATGTGCTAAAACACGAGTCGGCGACGTCTTTTCTGAGCGATATAACAAATTTGTTGACACTGTCATCGATCAGTTAGTTGACGGACTTTTCTACGAAGAAGAGTAGTGTTGACACAGCTTCAAGATTT
AAATCTACACTGTACAGTGACCATTATTAGCTTGGAGAGGTAAAATAGAATACCATGAATTTATGTTTATGGCGAATTTTATGGAAAATTTTGTATATATAGAAATAATAATTGGAGATTCAGCTGAAGATCCCCATTTGGGCATTGTTTAGAGAATGAATCCTTGGTATACCTTATTTGGGATGTTTGAGAGGGTTCAG
ACTCCAGAATATTTTAGGGTAAATCCACACTCCTGAACCTTACCTTCCAGAAACCTGTTTTTGGGTTCAGATTCAAGATATTTTAGGGTAAATTCACACTCCTGAACCCTACGTTGCCAGAAACCTGTTTTTGGTTTCGTTTGCAGCGCCGTTCTATTTCCCATCCCATCCCCGTCTTGAGAGTGCATTGATTTGGATTA
AAACTCCTGGATTGTGTCTCCTCTGGCGCTCTCAGGCAGAACCATGATAGGTTGCATTAATGCATTTTTTGAATACTCTAAATACCCTTTTCTTTTTGGCCAGATAGGGGTCTATTTCCATTGGGACATGTCGCGGGGATTCTCTCGTAGAGCCCGGAGACAGAATGCAAGGAGAATCGAACCTCCCTAAATCACAGCCA
AATGGACATTGCAGGGTGCATTAATATATTTATATTTAGTTACTCTCCTTTCTTATTATGTATTTGTCTGAAGTAGGAGTATATTTCCCACCTGGCCCAATTGATATGTTACTACGAGAACTCCCAGGTAGATGCCATAAGCATCATCCGCTGGGAATCCAAGGTAAGCTCCCACTAATTTACAGCTTCAGCATAGCTCA
AGGTGCATTAATACATTATTAATCAATTTTATATGCATTATTTATAATATGCTTGACAAAGGATTTTGTATGCACAATTTATAATATGCTTGGCAAGGGATGCCCTGTCCTTTGCGCCCTTTCTGGCTTGTGGTTTGCTATCCATATCCATGTGATGTGGGTAATTTTAAGCTATTACTTCAATCGCATATCTCTATGAT
GTAATCTCGTTCCACATTGGTACTTCCTTCCTATCCACAA
Intron 2 GTAAAATAGA ... ACACCATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.56 | 11 | 34 | 3 |
| A2 | 75 | 15 | 45 | 0 |
| A3 | 89.47 | 4 | 34 | 0 |
| A4 | 77.27 | 5 | 17 | 3 |
| A5 | 80.95 | 4 | 17 | 0 |
| A6 | 80.57 | 190 | 788 | 3 |
| A7 | 78.89 | 133 | 497 | 2 |
| A8 | 81.45 | 177 | 777 | 15 |
| A9 | 79.65 | 138 | 540 | 10 |
| A10 | 74.26 | 105 | 303 | 2 |
>TRINITY_DN36621_c0_g1_i1 from sample A8 / Example spliced isoformGAAAAATCAGCTTTATCTGTGTCACAAACCTGTGGTTATATCACTTGAAATTTTGGTCATATGATTCTTGTTCACAAACAAACAAACATCACATTTACAAAATTGGAAAAAGTGTGGTGTGTTGTGGTTGGAGAACATGGAAAACTGCTGTTTCTTGGCCGTGAATCGTTTATCAGAGACGTGTCCGAGTGACTGACCAT
GTAATCCCCAATACAAATAAATAAATAAAAGATTCGAGAGCGAGGGCAATCTGGTTGGCTACTTGTAAGCAGAATCCTTGCCTTGGCCTTTGATTCAGAATATTCAGAGCAGAGCAATGACAATGGCAATGGGAATAACAATAAGAATGACCGGGAATATTCCAGAGTCCCAGCATCTTCCTCCAAAACGGAATCTGGAA
TACAGTGTTAATGTACCGCCCAAAACTTCGACCCTCATTCTCAGGAAGAGGAAGAGGATGATGAAGATGCGTGCATTAGCAGACGACAATAAGGATTCCAAGGTTGTGCTTCCACCCCGCCTGTGTACTCTCAGGGCTTTCGCTGAAAGTGGAGATAATGTTGTTCAAGCCGATCTCGAGCCCGACAGAATGCCAAGTTT
CTTCAATTCCCTCGCCGCCAGTATCGACCATGCAGCCAAATTCAAAGACTGGGAAATTCTGTCGGGTCGTTTGGCAATGATCGTTTTTGCGGCAGCCATCAACGTGGAGCTGTTGACGGGAAATTCTCTGTTTCACAAGATGGACGTGCAAAAGATCTGCGAGTTTGGGGGAGTCTGCATGGCTTCCATTGTAGGCGCTG
CTGGATTCGCATGGGCATCATGTGCTAAAACACGAGTCGGCGACGTCTTTTCTGAGCGATATAACAAATTTGTTGACACTGTCATCGATCAGTTAGTTGACGGACTTTTCTACGAAGAAGAGTAGTGTTGACACAGCTTCAAGATTTAAATCTACACTGTACAGTGACCATTATTAGCTTGGAGAGCGCGCGCATATACA
TCTGCTCAGCGTGTTGCAGTTTGCAAGCTTTCAGAATATAACCGAGAAAACTGTGATTTATGAGGAAAGCAAATCCATGCTTGAGTTGTAAGCTTTGAAATCTACTAGAAACCCATACTGGATAGGATTGTTGGTTAATAAATAATTAACATAGATACTCATGAATTTTTCTTCTTCTTGTTTTACTTTGCCATACACCA
TAAGCGCGCGCATATACATCTGCTC
>TRINITY_DN36621_c0_g1_i2 from sample A8 / Example unspliced isoform:GAAAAATCAGCTTTATCTGTGTCACAAACCTGTGGTTATATCACTTGAAATTTTGGTCATATGATTCTTGTTCACAAACAAACAAACATCACATTTACAAAATTGGAAAAAGTGTGGTGTGTTGTGGTTGGAGAACATGGAAAACTGCTGTTTCTTGGCCGTGAATCGTTTATCAGAGACGTGTCCGAGTGACTGACCAT
GTAATCCCCAATACAAATAAATAAATAAAAGATTCGAGAGCGAGGGCAATCTGGTTGGCTACTTGTAAGCAGAATCCTTGCCTTGGCCTTTGATTCAGAATATTCAGAGCAGAGCAATGACAATGGCAATGGGAATAACAATAAGAATGACCGGGAATATTCCAGAGTCCCAGCATCTTCCTCCAAAACGGAATCTGGAA
TACAGTGTTAATGTACCGCCCAAAACTTCGACCCTCATTCTCAGGAAGAGGAAGAGGATGATGAAGATGCGTGCATTAGCAGACGACAATAAGGATTCCAAGGTTGTGCTTCCACCCCGCCTGTGTACTCTCAGGGCTTTCGCTGAAAGTGGAGATAATGTTGTTCAAGCCGATCTCGAGCCCGACAGAATGCCAAGTTT
CTTCAATTCCCTCGCCGCCAGTATCGACCATGCAGCCAAATTCAAAGACTGGGAAATTCTGTCGGGTCGTTTGGCAATGATCGTTTTTGCGGCAGCCATCAACGTGGAGCTGTTGACGGGAAATTCTCTGTTTCACAAGATGGACGTGCAAAAGATCTGCGAGTTTGGGGGAGTCTGCATGGCTTCCATTGTAGGCGCTG
CTGGATTCGCATGGGCATCATGTGCTAAAACACGAGTCGGCGACGTCTTTTCTGAGCGATATAACAAATTTGTTGACACTGTCATCGATCAGTTAGTTGACGGACTTTTCTACGAAGAAGAGTAGTGTTGACACAGCTTCAAGATTTAAATCTACACTGTACAGTGACCATTATTAGCTTGGAGAGgtaaaatagaatac
catgaatttatgtttatggcgaattttatggaaaattttgtatatatagaaataataattggagattcagctgaagatccccatttgggcattgtttagagaatgaatccttggtataccttatttgggatgtttgagagggttcagactccagaatattttagggtaaatccacactcctgaaccttaccttccagaaa
cctgtttttgggttcagattcaagatattttagggtaaattcacactcctgaaccctacgttgccagaaacctgtttttggtttcgtttgcagcgccgttctatttcccatcccatccccgtcttgagagtgcattgatttggattaaaactcctggattgtgtctcctctggcgctctcaggcagaaccatgataggtt
gcattaatgcattttttgaatactctaaatacccttttctttttggccagataggggtctatttccattgggacatgtcgcggggattctctcgtagagcccggagacagaatgcaaggagaatcgaacctccctaaatcacagccaaatggacattgcagggtgcattaatatatttatatttagttactctcctttct
tattatgtatttgtctgaagtaggagtatatttcccacctggcccaattgatatgttactacgagaactcccaggtagatgccataagcatcatccgctgggaatccaaggtaagctcccactaatttacagcttcagcatagctcaaggtgcattaatacattattaatcaattttatatgcattatttataatatgct
tgacaaaggattttgtatgcacaatttataatatgcttggcaagggatgccctgtcctttgcgccctttctggcttgtggtttgctatccatatccatgtgatgtgggtaattttaagctattacttcaatcgcatatctctatgatgtaatctcgttccacattggtacttccttcctatccacaaaagacttgagcag
tgtttctcattccatttcctgtttcgttattttctgtttcccgtttttgataacatagcttcaaccctcaattatatggtctgttggatcgtagcagatgtagatatattcttatgtatcttgtttgaaggtttagtcacacactcagagtttgggtatctgcatgcctgtattagcacacctggatatgcacatgttct
aataggtatgcttttaaaaatctcttttaaggaggcgtttggcatttatgtgttgctcttgtactttgttatatgcaaacttaatgcctctgtttgttgtctatctaacttcatcattactcattcactgtgatgtatgaaggaagcaaatcttgaaacttgagttgtacagtttgaaatctatgagaaatacatgctgg
ataggatcgttggttaataaataatttccacagatactaatggttttttttcttgttttactttgccatacaccataagCGCGCGCATATACATCTGCTCAGCGTGTTGCAGTTTGCAAGCTTTCAGAATATAACCGAGAAAACTGTGATTTATGAGGAAAGCAAATCCATGCTTGAGTTGTAAGCTTTGAAATCTACTA
GAAACCCATACTGGATAGGATTGTTGGTTAATAAATAATTAACATAGATACTCATGAATTTTTCTTCTTCTTGTTTTACTTTGCCATACACCATAAGCGCGCGCATATACATCTGCTC