sp|Q93WI9|HD3A_ORYSJ ----> Protein HEADING DATE 3A

Intron 1 GTATGTTTGT ... CTTTTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	74.37	71	137	206
A2	68.33	70	118.5	151
A3	69.2	73	132.5	164
A4	72.41	32	74	84
A5	78.15	26	77	93
A6	72.38	765	1208.5	2005
A7	70.13	764	1192.5	1794
A8	71.54	1214	1686.5	3051
A9	70.74	1002	1379.5	2423
A10	68.92	528	854	1171

>TRINITY_DN49053_c1_g3_i7 from sample A7 / Example spliced isoform

GGCAATTCATCGGCGCCGAACAAGAACAAGTATTAGATATGCCATGGGAGGAACTGCTTTCCTATGAAGCTCCAAGGGAGGGAACCCGCAAGATAGTTTGTACAGCATTCAGAACGATTTTATCTCTGCCCAACACCAGTACCAGTACTAATACCAACATCGAATCAACAATCAGTCTTAGAATGGTTATCAAGAATTAC
ACTCACGCACGTTGACTGCAGTTTGAATATCTGTGAACTGGCTACCCATGAATGTTTCAACCGTGTTTATTATCATTTGAATAGATTTTGAACGTTTTAGTCAGGAGGTTGTGAAGGTTTCCAAAGTTTCTTATCGTAATTTTATCTGTGTTTCTTCATACAATTACTGCCCAGGGATGTGTCATATGTTATCTGTCATT
TCTTAATGGAGTGATACTGTGGTA

>TRINITY_DN49053_c1_g3_i6 from sample A7 / Example unspliced isoform:

GGCAATTCATCGGCGCCGAACAAGAACAAGTATTAGATATGCCATGGGAGGAACTGCTTTCCTATGAAGCTCCAAGGGAGGGAACCCGCAAGATAGTTTGTACAGCATTCAGAACGATTTTATCTCTGCCCAACACCAGTACCAGTACTAATACCAACATCGgtatgtttgtgcccaatatcattataccaaagtcgcgg
aactatttcagtaccagagattttgcatccactaatgcacttggacctccgctggctgcttcttttttcagAATCAACAATCAGTCTTAGAATGGTTATCAAGAATTACACTCACGCACGTTGACTGCAGTTTGAATATCTGTGAACTGGCTACCCATGAATGTTTCAACCGTGTTTATTATCATTTGAATAGATTTTGA
ACGTTTTAGTCAGGAGGTTGTGAAGGTTTCCAAAGTTTCTTATCGTAATTTTATCTGTGTTTCTTCATACAATTACTGCCCAGGGATGTGTCATATGTTATCTGTCATTTCTTAATGGAGTGATACTGTGGTA

Intron 2 GTATCATGGT ... GCAATATTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	28.36	686.5	236.8	309
A2	29.59	729.3	334.8	281.5
A3	28.12	758.3	264.3	332
A4	28.24	599.5	234.5	240
A5	26.61	401.5	127	166
A6	27.36	6895.8	2353.5	2870
A7	29.51	5781.8	2255.8	2606.5
A8	29.34	5819	2040.3	2809.8
A9	28.57	5921.5	2190.3	2571.5
A10	30.62	4659	1836.5	2292.5

>TRINITY_DN122647_c2_g1_i2 from sample A2 / Example spliced isoform

TCAGTCCGAGTTAATGGAAACCTTCAGGAACCCCACATTAATAATAGTGGTTATGACGGGTCCTGACGCTGTTGGCGGCGAGTATTTGCACTGGTTAACTACGCATGTCATGGCCGCCGAACAAATAATAGAGATGCCATCGGAGGACCTGATTAACTATGAAGCTCCAAGGGCAGGACGCATGGGTACCGGCAACATAG
TTTTCACAGTATTCAAGCCGCCGGATGAATCTCTGCCCAATATCATTATACCCCACTCGCGCAACAATTTCAGTACCAGAGATTTTGCATCCATTAATGCACTTGGAGATCCGGTGGCTGCTGCTTTTTTCAATATCATCGATGCGGTTGGCAATGGTTATCATTGATCAAGAATTACCTGCATGTAACGGCAATGTACG
GTGAGTGCAGTTTTAATATATGTGAATTAGT

>TRINITY_DN122647_c2_g1_i3 from sample A2 / Example unspliced isoform:

TCAGTCCGAGTTAATGGAAACCTTCAGGAACCCCACATTAATAATAGTGGTTATGACGGGTCCTGACGCTGTTGGCGGCGAGTATTTGCACTGGTTAACTACGCATGTCATGGCCGCCGAACAAATAATAGgtatcatggttgtgtttatttgttgagcttgaaatcgatcgattgaatgcgttccgtaatgtttaccgt
ggtggatcatgttcgtttctttctgctgcaatattagAGATGCCATCGGAGGACCTGATTAACTATGAAGCTCCAAGGGCAGGACGCATGGGTACCGGCAACATAGTTTTCACAGTATTCAAGCCGCCGGATGAATCTCTGCCCAATATCATTATACCCCACTCGCGCAACAATTTCAGTACCAGAGATTTTGCATCCAT
TAATGCACTTGGAGATCCGGTGGCTGCTGCTTTTTTCAATATCATCGATGCGGTTGGCAATGGTTATCATTGATCAAGAATTACCTGCATGTAACGGCAATGTACGGTGAGTGCAGTTTTAATATATGTGAATTAGT