NA ----> NA
Intron 1 GTAAGAAACC ... TGAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.48 | 73 | 6 | 32 |
| A2 | 24.77 | 82 | 0 | 27 |
| A3 | 27.91 | 62 | 0 | 24 |
| A4 | 30 | 63 | 9 | 27 |
| A5 | 21.82 | 43 | 2 | 12 |
| A6 | 26.08 | 530 | 2 | 187 |
| A7 | 27.59 | 614 | 9 | 234 |
| A8 | 29.26 | 573 | 11 | 237 |
| A9 | 29.72 | 570 | 5 | 241 |
| A10 | 28.4 | 416 | 2 | 165 |
>TRINITY_DN99837_c0_g1_i5 from sample A4 / Example spliced isoformCGTACATCCCCTTCATTGGGCACTAAGAATTCAAAAAATCGAAGGGAGTTTGGGTTTCGATGGAAAAATAAAACATGTTAGTCCTGCGACTCGGACTTTCTGCCGTTCCCATATTTGTCATTGGAGGGAAATACCGTCATTACTATTTCATCTTCGTTTCCTTGTTCGATTCCGTGTTTCGTAGGGATTGAACTTTAGAC
GTAGGAGAAGAGAAGGCAGCAAGCGGCCATGGTGGAAGCGAAAGCAGCAGCCATGGAAGTGGAGGCGGAGAAGACAGCAAAGCCCTCAGTTGTCGGGGCTTCTTCGCCCTTCGTCGATAAAATTCTGGCTCCTGGAGACACCGTACTAGACCTAACGCGACTCAATAATCAGACTCTCAGACTGGGCGGAGGTCTTCGTC
AGGACTGTGACAATGTTACTGTAGCAAAGGTTGGTAGGCTCAGGTATACAAAACCAAACAAATATTGGGTTGAAGGCTCACAAAAGAGGTATACACCTGCTGTTGAAGACAAAATTATTGGCATTGTTGTTGATAGCAAGTCTGAAAACTTTTTAGTGGACATAAAAGGTCCAACGTTGGCTTTCCTACCTGTTCTTGCA
TTTGAAGGCGGAACAAGGAAGAACATACCAAAGTTTGAGATTGGTGCATTGATCTATGTGCGAGTGGTTAAAACAAATCGTGACATGAACCCAGAGCTTTCATGCACCGACGCCAGTGGCAAAGCTTCAGAATTTGGCTCTTTAAGTGGTGGTTATATGTTTGAATGTTCATCTGGATTGGCACGAGCGTTACTGAGCAA
GCCTACCTGTCCAGTTCTTGAAGCCCTAGGAAAAGGTTTGTCATTTGAGATAGCAGTGGGATTAAACGGTCGAGTTTGGGTGAATGCTCCATCTCATTCCACAGTTATTCTTGTTTCAAATGCTATAATGAATGCAGAATATTTGAGTGGGGTTCAGCAAAAAATTATGGTGCAGAAACTCTTGCAAAGAGTTCAATAGT
GGGAATCGTTACTTGTAAATTTATCCAGGAATTGTTTACTATGTTAACAATGCTGTCAGTATCTGTCAAGGGTTTCATAAACCTTATTTTTTTATTATCAATTCCTCTTGTCGTCGAGCCTATTCAATCGTGAATGATTACAGCATTTCTATCAAAAGGTCTGTGATTAATGTTGTATTCTCTAGGAATTGACAACTTCT
TCATGTGATAAGTTAATGGATGAAGATGTCAGTGTTTTGTGATTGGAATTCATGAAATTCATGCCAAAGCTAAAATTGAGGGAACTCCATTAGTAGCTTGATTCACTGAAAGTACAACACACAGGTAGAGATCCTGGTATCTGGACTATGCCAAATGCTTTGAATCTTGGTAAACTGTTTAGTTACAGAAATTCCA
>TRINITY_DN99837_c0_g1_i3 from sample A4 / Example unspliced isoform:CGGGCGAATGCATGCTGGAGATTACATTTAATTTTTGTTGTCTTTACTATAGGTTACTGAGCAAGCCTACCTGTCCAGTTCTTGAAGCCCTAGGAAAAGGTTTGTCATTTGAGATAGCAGTGGGATTAAACGGTCGAGTTTGGgtaagaaacctatattttaaagctttttcctatttgggattaaagcaatcactgtca
ttgaagagcttattcttttcttgattgaatttcagGTGAATGCTCCATCTCATTCCACAGTTATTCTTGTTTCAAATGCTATAATGAATGCAGAATATTTGAGTGGGGTTCAGCAAAAAATTATGGTGCAGAAACTCTTGCAAAGAGTTCAATAGTGGGAATCGTTACTTGTAAATTTATCCAGGAATTGTTTACTATGT
TAACAATGCTGTCAGTATCTGTCAAGGGTTTCATAAACCTTATTTTTTTATTATCAATTCCTCTTGTCGTCGAGCCTATTCAATCGTGAATGATTACAGCATTTCTATCAAAAGGTCTGTGATTAATGTTGTATTCTCTAGGAATTGACAACTTCTTCATGTGATAAGTTAATGGATGAAGATGTCAGTGTTTTGTGATT
GGAATTCATGAAATTCATGCCAAAGCTAAAATTGAGGGAACTCCATTAGTAGCTTGATTCACTGAAAGTACAACACACAGGTAGAGATCCTGGTATCTGGACTATGCCAAATGCTTTGAATCTTGGTAAACTGTTTAGTTACAGAAATTCCA
Intron 2 GTAAGTTCTC ... TTTACTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.5 | 60.8 | 9.5 | 15 |
| A2 | 25.72 | 61 | 3.5 | 21 |
| A3 | 8.04 | 94.3 | 8.8 | 8 |
| A4 | 23.54 | 72 | 3 | 22 |
| A5 | 23.74 | 35.5 | 4.5 | 11 |
| A6 | 29.83 | 391.3 | 26 | 165 |
| A7 | 27.38 | 431.8 | 29 | 161 |
| A8 | 26.99 | 393.8 | 25.5 | 144 |
| A9 | 24.82 | 397 | 29.8 | 130 |
| A10 | 22.21 | 324.3 | 16 | 92 |
>TRINITY_DN41340_c0_g1_i2 from sample A7 / Example spliced isoformTTCTTTTTAGAGCGTACATCCCCTTCATTGGGCACTAAGAATTCAAAAAATCGAAGGGACTTTGGGTTTCGATGGAAAAATAAAACATGTTAGTCCTGCGACTCGGACTTTCTGCCGTTCCCATATTTGTCATTGGAGGGAAATACCGTCATTACTATTTCATCTTCGTTTCCTTGTTCGATTCCGTGTTTCGTAGGGAT
TGAACTTTAGACGTAGAAGAAGAGAAGGCAGCAGGCGGCCATGGTGGAAGCGAAAGCAGCAGCCATGGAAGTGGAGGCGGAGAAGACAGCAAAGCCCTCAGTTGTCGGGGCTTCTTCTCCCTTCGTCGATAAAATTCTGGCTCCTGGAGACACCGTACTAGACCTAACGCGACTCAATAATCAGACTCTCAGACTGGGCG
GAGGTCTTCGTCAGGACTGTGACAATGTTACTGTAGCAAAGGTTGGTAGGCTCAGGTATACAAAACCAAACAAATATTGGGTTGAAGGCTCACAAAAGAGGTATACACCTGCTGTTGAAGACAAAATTATTGGCATTGTTGTTGATAGCAAGTCTGAAAACTTTTTAGTGGACATAAAAGGTCCAACGTTGGCTTTCCTA
CCTGTTCTTGCATTTGAAGGCGGAACAAGGAAGAACATACCAAAGTTTGAGATTGGTGCATTGATCTATGTGCGAGTGGTTAAAACAAATCGTGACATGAACCCAGAGCTTTCATGCACCGACGCCAGTGGCAAAGCTTCAGAATTTGGCTCTTTAAGTGGTGGTTATATGTTTGAATGTTCATCTGGATTGGCACGAGC
GTTACTGAGCAAGCCTACCTGTCCAGTTCTTGAAGCCCTAGGAAAAGGTTTGTCATTTGAGATAGCAGTGGGATTAAACGGTCGAGTTTGGGTGAATGCTCCATCTCATTCCACAGTTATTCTTGTTTCAAATGCTATAATGAATGCAGAATATTTGAGTGGGGTTCAGCAAAAAATTATGGTGCAGAAACTCTTGCAAA
GAGTTCAATAGTGGGAATCGTTACTTGTAAATTTATCCAGGAATTGTTTACTATGTTAACAATGCTGTCAGTATCTGTCAAGGGTTTCATAAACCTTATTTTTTTTTTATCAATTCCTCTTGTCGTCGAGCCTATTCAATCATGAATGATTACAGCATTTCTATCAAAAGGTCTGTGATTAATGTTGTATTCTCTAGGAA
TTGACAACTTCTTCATGTGATAAGTTAATGGATGAAGATGTCAGTGTTTTGTGATTGGAATTCATGAAATTCATGCCAAAGCTAAAATTGAGGGAACTCCATTAGTAGCTTGATTCACTGAAAGTACAACACACAGGTAGAGATCCTGGTATCTGGACTATGCCAAATGCTTTGAATCTTGGTAAACTGTTTAGTTACAG
AAATTCCAAAGAATCAAGCTTCCTCTTCTTCGGCTGATTTGCACTGCTAAAAAATCAAAGGTAAACTGGATAATCTGAAGTCAAATTGACTTGTCTGTTTGCATTTCTCCAAGGTCTAAATTATGCAGATTTCATC
>TRINITY_DN41340_c0_g1_i1 from sample A7 / Example unspliced isoform:TTCTTTTTAGAGCGTACATCCCCTTCATTGGGCACTAAGAATTCAAAAAATCGAAGGGACTTTGGGTTTCGATGGAAAAATAAAACATGTTAGTCCTGCGACTCGGACTTTCTGCCGTTCCCATATTTGTCATTGGAGGGAAATACCGTCATTACTATTTCATCTTCGTTTCCTTGTTCGATTCCGTGTTTCGTAGGGAT
TGAACTTTAGACGTAGAAGAAGAGAAGGCAGCAGGCGGCCATGGTGGAAGCGAAAGCAGCAGCCATGGAAGTGGAGGCGGAGAAGACAGCAAAGCCCTCAGTTGTCGGGGCTTCTTCTCCCTTCGTCGATAAAATTCTGGCTCCTGGAGACACCGTACTAGACCTAACGCGACTCAATAATCAGACTCTCAGACTGGGCG
GAGGTCTTCGTCAGGACTGTGACAATGTTACTGTAGCAAAGGTTGGTAGGCTCAGGTATACAAAACCAAACAAATATTGGGTTGAAGGCTCACAAAAGAGGTATACACCTGCTGTTGAAGACAAAATTATTGGCATTGTTGTTGATAGCAAGTCTGAAAACTTTTTAGTGGACATAAAAGGTCCAACGTTGGCTTTCCTA
CCTGTTCTTGCATTTGAAGGCGGAACAAGGAAGAACATACCAAAGTTTGAGATTGGTGCATTGATCTATGTGCGAGTGGTTAAAACAAATCGTGACATGAACCCAGAGCTTTCATGCACCGACGCCAGTGGCAAAGCTTCAGAATTTGGCTCTTTAAGTGGTGGTTATATGTTTGAATGTTCATCTGGATTGGCACGAGC
gtaagttctcattgacagctttaaaaattctttgatcattctaccatttgtaggttggcatctttactcggctaatttgactcgagtttcagtagtttttgttacaaatctggaagcatgggactgcttcaacttgccagttcattactctgaatagggacttctaatatttttgcagtagaaataaaaaatgagattac
agacagaaaagggacaatggagttgatttatgctagagttcatgctgttcttgtatttagtagcacaacactatttacaagaatatgttcatcacatggtttgtttgtctctttttccttcagagaggcttgggcgaatgcatgctggagattacatttaatttttgttgtctttactatagGTTACTGAGCAAGCCTAC
CTGTCCAGTTCTTGAAGCCCTAGGAAAAGGTTTGTCATTTGAGATAGCAGTGGGATTAAACGGTCGAGTTTGGGTGAATGCTCCATCTCATTCCACAGTTATTCTTGTTTCAAATGCTATAATGAATGCAGAATATTTGAGTGGGGTTCAGCAAAAAATTATGGTGCAGAAACTCTTGCAAAGAGTTCAATAGTGGGAAT
CGTTACTTGTAAATTTATCCAGGAATTGTTTACTATGTTAACAATGCTGTCAGTATCTGTCAAGGGTTTCATAAACCTTATTTTTTTTTTATCAATTCCTCTTGTCGTCGAGCCTATTCAATCATGAATGATTACAGCATTTCTATCAAAAGGTCTGTGATTAATGTTGTATTCTCTAGGAATTGACAACTTCTTCATGT
GATAAGTTAATGGATGAAGATGTCAGTGTTTTGTGATTGGAATTCATGAAATTCATGCCAAAGCTAAAATTGAGGGAACTCCATTAGTAGCTTGATTCACTGAAAGTACAACACACAGGTAGAGATCCTGGTATCTGGACTATGCCAAATGCTTTGAATCTTGGTAAACTGTTTAGTTACAGAAATTCCAAAGAATCAAG
CTTCCTCTTCTTCGGCTGATTTGCACTGCTAAAAAATCAAAGGTAAACTGGATAATCTGAAGTCAAATTGACTTGTCTGTTTGCATTTCTCCAAGGTCTAAATTATGCAGATTTCATC