sp|P0C5E2|LRL12_ARATH ----> LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2
Intron 1 GTACTCCAAA ... TTCGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20 | 4 | 2 | 0 |
| A2 | 0 | 2 | 0 | 0 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 1 | 0 |
| A6 | 100 | 0 | 3 | 1 |
| A7 | 27.27 | 4 | 0 | 3 |
| A8 | 9.09 | 5 | 0 | 1 |
| A9 | 14.29 | 12 | 2 | 2 |
| A10 | 12.5 | 7 | 0 | 2 |
>TRINITY_DN39397_c0_g1_i4 from sample A6 / Example spliced isoformATCAAGCAATGTAACGCTACTGTCTATTACAGTTTGTTTCAGCATTTGATTCGGGGTTGCCCTCTAGAACAGAAAACAATTGAGGTAGCATTAACGCAATGGATTTCCCAAGATGCAAAGAGAGATCAAAGTTGTGTGTCGTGTCAAGCAAGTGGGGGGATCTGTGGTTACAACTTTTTGGATTCAACTGCCCCTTTCGT
CTGCTATTGCAAGCATGGACCCCGTACCAACAACTGCGCACAGGGAAAGAACGTGAAGTCTGATGCTGTAATAGGTGTTTCCCTTGGACTGGCTGTGTTAACAGTTGTAGGATTATTAGTGTGTATAACTGTGCATAGGAGAAGGAAGCGTCGTATGTTTAGCAATAGTTTTGTGGTTAGCGGCTTTACATACGATGAAT
ACAAAGATATGGAAGCAGCTATACAAGGCAAGATAGGGACTCTGCCCATTTTCTCGTACAAAGTACTGAAAGAAGCGACTAATGACTTCGACGACACAAAACAACTCGGAGATGGGGGGCATGGTTCGGTGTATCTGGGCAAACTACCCGATGGTCGTGCTGTAGCAGTAAAGAAACTGTATCATCATAATTATCAACGA
GTTCAACAGTTCATCAATGAGGTGCAGATTCTTTCAACCTCCTATCATCCGAATCTGGTTCGTCTTTATGGCTGTACTTCTCCAAAGGACCGTGAACTGCTTCTTGTTTATGAATATGTTCCAAATGGCACTCTGGCAGATCATCTTCACGGGGGACGGAATGAGGCCCACAATGGAGCTTTAAATTGGAACACCCGTTT
GAGAATTTGCATAGAAATTGCCCGGGCCCTAGCATTTCTTCACTGCCTTGATCCACCTGTATTTCACAGAGATGTAAAGTCTTCCAACATTCTACTGGACGAAGACTTACATGTCAAAGTGGGGGATTTTGGGATTTCAAGATTTAAGCCAGTAGATGCAACCCATATTTCAACTGCTCCACAGGGTACGCCGGGCTACA
TTGACCCAGAGTACCACATTTGCTTTCAGCTCACAGACAAATCCGATGTCTACAGCTTCGGCGTTGTTTTGATGGAAATCATATCGGCCAAGTTAGCTGTGGATGTTAATCGGAGTAAGGCGGAAATTATTCTAGCTAACATGGCTATAACAAAGATTCAAGCCGAAGCTTTGCATGAGCTGATAGATCCAAATCTAGAC
ATTGACTCAAACCCTGACAAAATAGTTGCGGCTCATGCAGTTGCCAAATTGGCTTTCAAATGCCTTTCACCGCAAAGGGAAGCTCGACCAAATATGAAGGAAGTTGTGGCTGAACTTGAACAAATCAAACAAATTGAAGTGCAATGGAAGCTCCCACCATTTAATCCTCCGACCCCAACTTCTGTTCAGGAAAAATGGCC
CAGCACAGCAACCATTCCTCAAAATACAGAGTAATTATTATAGCTAATTCTCCTCGTTGCTTCTTTTATTTTCGACCGGCTAGATAGAATAATTTTTTAAATTATTATCTTCTTTCTCTGGTTAATCTTTCGCCAAATCTAAAATAATATATCTTCTTTGTAAATACCTTATTGTAATTATAAAGAATCTCAAACACCAA
TGTCATATTTTTATTATTTTTTGACTATAATCTTATAAAGAAATCTCAAAC
>TRINITY_DN39397_c0_g1_i5 from sample A6 / Example unspliced isoform:ATCAAGCAATGTAACGCTACTGTCTATTACAGTTTGTTTCAGCATTTGATTCGGGGTTGCCCTCTAGAACAGAAAACAATTGAGGTAGCATTAACGCAATGGATTTCCCAAGATGCAAAGAGAGATCAAAGTTGTGTGTCGTGTCAAGCAAGTGGGGGGATCTGTGGTTACAACTTTTTGGATTCAACTGCCCCTTTCGT
CTGCTATTGCAAGCATGGACCCCGTACCAACAACTGCGCACAGGgtactccaaattcatttatatttatgtacaaagtgaatattgtctctcaatgttttggttaattaagtagatgtgcagtcaatagaatgcccttaagctgatttccatttatattttcgaagcagGAAAGAACGTGAAGTCTGATGCTGTAATAGG
TGTTTCCCTTGGACTGGCTGTGTTAACAGTTGTAGGATTATTAGTGTGTATAACTGTGCATAGGAGAAGGAAGCGTCGTATGTTTAGCAATAGTTTTGTGGTTAGCGGCTTTACATACGATGAATACAAAGATATGGAAGCAGCTATACAAGGCAAGATAGGGACTCTGCCCATTTTCTCGTACAAAGTACTGAAAGAAG
CGACTAATGACTTCGACGACACAAAACAACTCGGAGATGGGGGGCATGGTTCGGTGTATCTGGGCAAACTACCCGATGGTCGTGCTGTAGCAGTAAAGAAACTGTATCATCATAATTATCAACGAGTTCAACAGTTCATCAATGAGGTGCAGATTCTTTCAACCTCCTATCATCCGAATCTGGTTCGTCTTTATGGCTGT
ACTTCTCCAAAGGACCGTGAACTGCTTCTTGTTTATGAATATGTTCCAAATGGCACTCTGGCAGATCATCTTCACGGGGGACGGAATGAGGCCCACAATGGAGCTTTAAATTGGAACACCCGTTTGAGAATTTGCATAGAAATTGCCCGGGCCCTAGCATTTCTTCACTGCCTTGATCCACCTGTATTTCACAGAGATGT
AAAGTCTTCCAACATTCTACTGGACGAAGACTTACATGTCAAAGTGGGGGATTTTGGGATTTCAAGATTTAAGCCAGTAGATGCAACCCATATTTCAACTGCTCCACAGGGTACGCCGGGCTACATTGACCCAGAGTACCACATTTGCTTTCAGCTCACAGACAAATCCGATGTCTACAGCTTCGGCGTTGTTTTGATGG
AAATCATATCGGCCAAGTTAGCTGTGGATGTTAATCGGAGTAAGGCGGAAATTATTCTAGCTAACATGGCTATAACAAAGATTCAAGCCGAAGCTTTGCATGAGCTGATAGATCCAAATCTAGACATTGACTCAAACCCTGACAAAATAGTTGCGGCTCATGCAGTTGCCAAATTGGCTTTCAAATGCCTTTCACCGCAA
AGGGAAGCTCGACCAAATATGAAGGAAGTTGTGGCTGAACTTGAACAAATCAAACAAATTGAAGTGCAATGGAAGCTCCCACCATTTAATCCTCCGACCCCAACTTCTGTTCAGGAAAAATGGCCCAGCACAGCAACCATTCCTCAAAATACAGAGTAATTATTATAGCTAATTCTCCTCGTTGCTTCTTTTATTTTCGA
CCGGCTAGATAGAATAATTTTTTAAATTATTATCTTCTTTCTCTGGTTAATCTTTCGCCAAATCTAAAATAATATATCTTCTTTGTAAATACCTTATTGTAATTATAAAGAATCTCAAACACCAATGTCATATTTTTATTATTTTTTGACTATAATCTTATAAAGAAATCTCAAAC
Intron 2 GCAAGTAATG ... GACCGTGTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 4 | 0 | 2 |
| A2 | 75 | 1 | 1 | 3 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | 72.73 | 3 | 3 | 8 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 100 | 0 | 0 | 2 |
| A7 | 50 | 2 | 0 | 2 |
| A8 | 100 | 0 | 0 | 4 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 66.67 | 2 | 0 | 4 |
>TRINITY_DN38300_c0_g1_i1 from sample A9 / Example spliced isoformATCCGCTTCCAACCTCGGGTTCAGACCATGTATAGGTTTTATTAGTTAAGAATAAATATAAGAGGTTTCGAGTTTTTAAGTAACAAGATTTCCTCCATCGATTTTCTTGGCAAGTTATGTGGCATGGCCTTTGAAGCCTACTTATCATTATCCTATTTTAGAGTGTGAATTTTCTCCTTCGATTTTCTTGATGATCAAGA
AAGTAGAAATGGGCAGACGAAATCAAATGATTAGCGATGCTGTTCGTCTGGCTGGCAATGAAAACCAAATTGATTATGTAGATTTCGTTCCATTAACAGACTTTCTATGATCACGGCCGAGGGACTGTGCTGACACAGACTCCGCTGCCATTGAATGCCAGTTGAATCATTTCATCGCTACCTGGCCTTCATAAATCGTC
CAATTGTGTTTGCTGTTACGGGATCCTTTTAGTTTTCCCATGCCTATCTTCACATCTTCTCCCAATGGAGTTATATGTTCCTCGCCTTTGCTCTATGCCTCGGCCCCGCTTCTTCCTTATCAGTATAACTGCATTCTGTGCCTCTCTGCTCCCCTGCTCTGTAATATGCTTGGACGCGGATTATGAGTATTGCCAAAATA
GTAGTACATGTGGCAGCATTACTTTTCGGTATCCTTTTGGCGTAGGAAACCATGGATGCGGTCTACCTGGCTTTCAGATCAACTGTGTGGATAACTTAAGGCCAGTAATTACGATTAAAGGTCATATGTACGCAATTTTGGGGATTAGCTATGATATCCACAGCTTCATCCTTTTCAGGGACGAGAACTGCCAGTTTTCA
GGTGCTGCCGTTATAGGCCAGGAATTTGCAGACAGCGACTTCGGCATGACGAGTATAGTGAACTGGACTCTAAACGTATACAGGTGTATTACATCTAATTTACAGGGTGCAGTGTACTTCAACAAAAGAGGGGTGATCAAGCAATGTAACGCTACTGTCTATTACAGTTTGTTTCAGCATTTGATTCGGGGTTGCCCTCT
AGAACAGAAAACAATTGAGGTAGCATTAACGCAATGGATTTCCCAAGATGCAAAGAGAGATCAAAGTTGTGTGTCGTGTCAAGCAAGTGGGGGGATCTGTGGTTACAACTTTTTGGATTCAACTGCCCCTTTCGTCTGCTATTGCAAGCATGGACCCCGTACCAACAACTGCGCACAGGGAAAGAACGTGAAGTCTGATG
CTGTAATAGGTGTTTCCCTTGGACTGGCTGTGTTAACAGTTGTAGGATTATTAGTGTGTATAACTGTGCATAGGAGAAGGAAGCGTCGTATGTTTAGCAATAGTTTTGTGGTTAGCGGCTTTACATACGATGAATACAAAGATATGGAAGCAGCTATACAAGGCAAGATAGGGACTCTGCCCATTTTCTCGTACAAAGTA
CTGAAAGAAGCGACTAATGACTTCGACGACACAAAACAACTCGGAGATGGGGGGCATGGTTCGGTGTATCTGGGCAAACTACCCGATGGTCGTGCTGTAGCAGTAAAGAAACTGTATCATCATAATTATCAACGAGTTCAACAGTTCATCAATGAGGTGCAGATTCTTTCAACCTCCTATCATCCGAACCTGGTTCGTCT
TTATGGCTGTACTTCTCCAAAGGACCGTGAACTGCTTCTTGTTTATGAATATGTTCCAAATGGCACTCTGGCAGATCATCTTCACGGGGGACGGAATGAGGCCCACAATGGAGCTTTAAATTGGAACACCCGTTTGAGAATTTGCATAGAAATTGCCCGGGCCCTAGCATTTCTTCACTGCCTTGATCCACCTGTATTTC
ACAGAGATGTAAAGTCTTCCAACATTCTACTGGACGAAGACTTACATGTCAAAGTGGGGGATTTTGGGATTTCAAGATTTAAGCCAGTAGATGCAACCCATATTTCAACTGCTCCACAGGGTACGCCGGGCTACATTGACCCAGAGTACCACATTTGCTTTCAGCTCACAGACAAATCCGATGTCTACAGCTTCGGCGTT
GTTTTGATGGAAATCATATCGGCCAAGTTAGCTGTGGATGTTAATCGGAGTAAGGCGGAAATTATTCTAGCTAACATGGCTATAACAAAGATTCAAGCCGAAGCTTTGCATGAGCTGATAGATCCAAATCTAGACATTGACTCAAACCCTGACAAAATAGTTGCGGCTCATGCAGTTGCCAAATTGGCTTTCAAATGCCT
TTCACCGCAAAGGGAAGCTCGACCAAATATGAAGGAAGTTGTGGCTGAACTTGAACAAATCAAACAAATTGAAGTGCAATGGAAGCTCCCACCATTTAATCCTCCGACCCCAACTTCTGTTCAGGAAAAATGGCCCAGCACAGCAACCATTCCTCAAAATACAGAGTAATTATTATAGCTAATTCTCCTCGTTGCTTCTT
TTATTTTCGACCGGCTAGATAGAATAATTTTTTAAATTATTATCTTCTTTCTCTGGTTAATCTTTCGCCAAATCTAAAATAATATATCTTCTTTGTAAATACCTTATTGTAATTATAAAGAATCTCAAACAC
>TRINITY_DN38300_c0_g1_i3 from sample A9 / Example unspliced isoform:AAATATAAGAGGTTTCGAGTTTTAAGTAACAAGATTTTCTCCTTCGATTTTCTTGgcaagtaatgtggcatggcctttgaatccttctttatcataattctattttagagtgtgaaaacttctgttacgctagatagactaaccacttttccaatacaatgacaaaaaatccaaaactcttttcatcttctgatagattt
ttctttcaaacgtctttgaccgtgtagATGATCAAGAAAGTAGAAATGGGCAGACGAAATCAAATGATTAGCGATGCTGTTCGTCTGGCTGGCAATGAAAACCAAATTGATTATGTAGATTTCGTTCCATTAACAGACTTTCTATGATCACGGCCGAGGGACTGTGCTGACACAGACTCCGCTGCCATTGAATGCCAGTT
GAATCATTTCATCGCTACCTGGCCTTCATAAATCGTCCAATTGTGTTTGCTGTTACGGGATCCTTTTAGTTTTCCCATGCCTATCTTCACATCTTCTCCCAATGGAGTTATATGTTCCTCGCCTTTGCTCTATGCCTCGGCCCCGCTTCTTCCTTATCAGTATAACTGCATTCTGTGCCTCTCTGCTCCCCTGCTCTGTA
ATATGCTTGGACGCGGATTATGAGTATTGCCAAAATAGTAGTACATGTGGCAGCATTACTTTTCGGTATCCTTTTGGCGTAGGAAACCATGGATGCGGTCTACCTGGCTTTCAGATCAACTGTGTGGATAACTTAAGGCCAGTAATTACGATTAAAGGTCATATGTACGCAATTTTGGGGATTAGCTATGATATCCACAG
CTTCATCCTTTTCAGGGACGAGAACTGCCAGTTTTCAGGTGCTGCCGTTATAGGCCAGGAATTTGCAGACAGCGACTTCGGCATGACGAGTATAGTGAACTGGACTCTAAACGTATACAGGTGTATTACATCTAATTTACAGGGTGCAGTGTACTTCAACAAAAGAGGGGTGATCAAGCAATGTAACGCTACTGTCTATT
ACAGTTTGTTTCAGCATTTGATTCGGGGTTGCCCTCTAGAACAGAAAACAATTGAGGTAGCATTAACGCAATGGATTTCCCAAGATGCAAAGAGAGATCAAAGTTGTGTGTCGTGTCAAGCAAGTGGGGGGATCTGTGGTTACAACTTTTTGGATTCAACTGCCCCTTTCGTCTGCTATTGCAAGCATGGACCCCGTACC
AACAACTGCGCACAGGGTACTCCAAATTCATTTATATTTATGTACAAAGTGAATATTGTCTCTCAATGTTTTGGTTAATTAAGTAGATGTGCAGTTAATAGAATGCCCTTAAGCTGATTTCCATTTATATTTTCG