sp|B8BKI8|MCM2_ORYSI ----> DNA replication licensing factor MCM2
Intron 1 GTATGCTTTT ... CCTCTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.61 | 467 | 3 | 93 |
| A2 | 15.98 | 405 | 2 | 77 |
| A3 | 11.48 | 501 | 0 | 65 |
| A4 | 12.68 | 413 | 0 | 60 |
| A5 | 15.92 | 132 | 0 | 25 |
| A6 | 6.62 | 127 | 0 | 9 |
| A7 | 10.73 | 474 | 0 | 57 |
| A8 | 15.25 | 150 | 0 | 27 |
| A9 | 12.22 | 438 | 0 | 61 |
| A10 | 10.82 | 503 | 0 | 61 |
>TRINITY_DN105888_c0_g1_i3 from sample A2 / Example spliced isoformCCGCCGGGTCGCTCAGATGCATTAGCTGACTATCGGAGATCGATCTTTTACTATTTTCTCAGAAGACCTCTGCCCGGCTTCTCAGAGTTCGAAGTCATGGATTCTGATCCTTCAACACCTGGGTCTCCAACATCTGGAGGAGGGTTTAGTACCGATCGGCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACA
GTCAATATCAGATGAAGCAGAAGTTGATCCAGACATATTGGGAGAAGATCCAGGCGATGAGGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTCATTCAACAAGATTACCAGCGTTTAGAAGCCCAAGATCGATATGAGTCTGCAGACTTGGATGATGAATACCAGGATGAAAGAGGATATGATGAGATCA
TGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAATGCATGGTGTTAGTGTTAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTCAGGCCACGACGAAGGGCCCGGGTTGAGCCCCCAATGACTGACCAAACTGAAGAGGAGCCTTACGAGGAGGAAGAAGATGACGAGGGT
GAGTATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTCCGGCGTTTCATAGCCAAAAAGTTCAGACAATTTGTACTCAGCTATGTGAACCAAAGAAGTGGAAATGGTGAACGTGAATATATTCGACTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGACTATAA
GCAGTTCATATTTACACATCCAAATATTGCCATCTGGTTAGCTGATGCTCCTCAGTCTGTGCTTGAAGTGATGGAAGAAGTGGCACTAAATGTTGTGTTGAATCTACATCCAAACTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAACCTGCCAGTTTATGATCAGATACGCAATATAAGGCAGGTGCATT
TGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAATTGCAGCAAGTTAAATATGATTGTAATAAATGTGGCACTGTTCTAGGACCTTTCTTTCAAAACTCGTATTCTGAAGTGAAAGTGGGTTCTTGTCCCGAATGCCAATCAAAGGGGCCATTTACAGTTAACATTGAACAGACA
ATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCAGGCATTGTGCCAGCTGGTCGACTCCCAAGGTACAAAGAAGTCATTCTCTTGAATGATCTCATTGATTGTGCACGCCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTT
TGCAACAGTTGTTGAAGCTAACTATGTTACAAAGAAACAAGACTTGTTTTCTGCCTATAAACTGACTGATGAGGATAAAGCAGAGATTGAAAAGCTTTCCAAGGATCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATCAAGACTGGAATAGCTCTTGCAATGTTTGGAG
GCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTGAAAAAACTGCTCAAAGGGCCGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACTGCAGCAGTCCATAAAGATCCTGTGACACGGGAA
TGGACTCTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTATTTGTTTGATTGATGAGTTCGACAAAATGAATGACCAGGACAGGGTGAGTATCCATGAAGCTATGGAGCAGCAGAGCATCAGTATATCCAAGGCTGGAATTGTGACATCATTACAAGCACGGTGTTCTGTGATTGCAGCAGCCAACCCCATAGGGGG
AAGGTATGACTCATCAAAAACATTTGCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCACGTTTCGATGTACTGTGTGTTGTGAAGGATGTTGTTGATCCAGTTAAAGATGAAATGCTTGCAAGCTTTGTTGTTGACAGTCATGCCAAGTCCCAACCTAAAGGTTCCAACATGGAGGAAACGCCTGTAGGCCTTTCTC
AGGATGAATCCCCCAATTTGAGCCATTCTTCTGATCCAGAGGTCTTATCTCAAGATACACTTAGGAAGTACATTACTTATGCCAAGCTTAATGTATTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATGTATATGCAGATCTGCGTCGGGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCAT
ATTGAGTCAATGATAAGAATGTCTGAAGCACATGCTAGAATGCATCTTAGGAATTATGTTGCTGAGGAGGATGTAGACATGGCTATCAGAGTTCTCTTAGATTCATTTATTTCAACCCAGAAGTATGGAGTTCAGAAAGCTTTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCT
ACATCTTCTGCGAGGACTTGTCAAGGATATCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGCCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGACCAAGGCACAAGAGTATGACATTTATGATCTGAAACCATTCTTTAACAGTAGACAATTTACAAGGGCTAATTTCACAGTGGATGAGGCAGAGG
GAATTATAAAGCATCCAGTTTCTTGATGAGGCTTGATGCATCAAATCATATTCAGGCTTGTAGCATCAAATATTCAGGCTTGATGTATACAATTTTAATAAACCAGTTCAGTTGTAATTTCAAATCCAGAAGAAAACTAGATCACGTCCAGTTCACAAGTCCATAGGACTGGCCTACACTAAAATTCAATGGATCTGTCA
TTACATGGTCATCCTTTGACTGCTTGATTGGCGCAATATACATGCCTCCAAGTATAAACAAAAACTATCTAGGAAGATGGTCTTTCTCCGTGTGCTTTGCTATGAGACAATTGATCGTATTGTGAAGGCTCTCACATAGGGATTCACCCTTTTGTTTCTATTGGATGCAAGGCCTGTGTGGAAATTTCTGCCTTCTGAGT
GCTTCTTGGATTTGTCACCTAGCTCTATCTAGTACATTTGTTTAATTATGTTGGGGTTGAATTCCTTACGCTATTATTTTGAAGTGTATTTGTACGCGGTCGCTATTCCATGAATGCTTATTATTATATATATTTAGAGGACT
>TRINITY_DN105888_c0_g1_i1 from sample A2 / Example unspliced isoform:ATGATCAGATACGCAATATAAGgtatgcttttctctcttttctaacactggaattctatatgattgcatatcagattccttgtatcgaatactagttggtttttctgaggcttattcatctaccatcctctctcagGCAGGTGCATTTGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTC
CCTCAATTGCAGCAAGTTAAATATGATTGTAATAAATGTGGCACTGTTCTAGGACCTTTCTTTCAAAACTCGTATTCTGAAGTGAAAGTGGGTTCTTGTCCCGAATGCCAATCAAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCAGGCATTGTGCC
AGCTGGTCGACTCCCAAGGTACAAAGAAGTCATTCTCTTGAATGATCTCATTGATTGTGCACGCCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTGTTGAAGCTAACTATGTTACAAAGAAACAAGACTTGTTTTCTG
CCTATAAACTGACTGATGAGGATAAAGCAGAGATTGAAAAGCTTTCCAAGGATCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATCAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTC
CTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTGAAAAAACTGCTCAAAGGGCCGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACTGCAGCAGTCCATAAAGATCCTGTGACACGGGAATGGACTCTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTATTTGTTTGAT
TGATGAGTTCGACAAAATGAATGACCAGGACAGGGTGAGTATCCATGAAGCTATGGAGCAGCAGAGCATCAGTATATCCAAGGCTGGAATTGTGACATCATTACAAGCACGGTGTTCTGTGATTGCAGCAGCCAACCCCATAGGGGGAAGGTATGACTCATCAAAAACATTTGCTCAAAACGTGGAGCTCACTGATCCTA
TTCTCTCACGTTTCGATGTACTGTGTGTTGTGAAGGATGTTGTTGATCCAGTTAAAGATGAAATGCTTGCAAGCTTTGTTGTTGACAGTCATGCCAAGTCCCAACCTAAAGGTTCCAACATGGAGGAAACGCCTGTAGGCCTTTCTCAGGATGAATCCCCCAATTTGAGCCATTCTTCTGATCCAGAGGTCTTATCTCAA
GATACACTTAGGAAGTACATTACTTATGCCAAGCTTAATGTATTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATGTATATGCAGATCTGCGTCGGGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAATGATAAGAATGTCTGAAGCACATGCTAGAATGCATCTTAGGAA
TTATGTTGCTGAGGAGGATGTAGACATGGCTATCAGAGTTCTCTTAGATTCATTTATTTCAACCCAGAAGTATGGAGTTCAGAAAGCTTTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTACATCTTCTGCGAGGACTTGTCAAGGATATCTTGCGTCTTGAAGAACTGATGT
CTGGGACTAGACCCCGCCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGACCAAGGCACAAGAGTATGACATTTATGATCTGAAACCATTCTTTAACAGTAGACAATTTACAAGGGCTAATTTCACAGTGGATGAGGCAGAGGGAATTATAAAGCATCCAGTTTCTTGATGAGGCTTGATGCATCAAATCATATTC
AGGCTTGTAGCATCAAATATTCAGGCTTGATGTATACAATTTTAATAAACCAGTTCAGTTGTAATTTCAAATCCAGAAGAAAACTAGATCACGTCCAGTTCACAAGTCCATAGGACTGGCCTACACTAAAATTCAATGGATCTGTCATTACATGGTCATCCTTTGACTGCTTGATTGGCGCAATATACATGCCTCCAAGT
ATAAACAAAAACTATCTAGGAAGATGGTCTTTCTCCGTGTGCTTTGCTATGAGACAATTGATCGTATTGTGAAGGCTCTCACATAGGGATTCACCCTTTTGTTTCTATTGGATGCAAGGCCTGTGTGGAAATTTCTGCCTTCTGAGTGCTTCTTGGATTTGTCACCTAGCTCTATCTAGTACATTTGTTTAATTATGTTG
GGGTTGAATTCCTTACGCTATTATTTTGAAGTGTATTTGTACGCGGTCGCTATTCCATGAATGCTTATTATTATATATATTTAGAGGACT
Intron 2 GTGCAACTTC ... TCACATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.85 | 424 | 89 | 108 |
| A2 | 18.28 | 342 | 58 | 95 |
| A3 | 18.56 | 373 | 94 | 76 |
| A4 | 18.49 | 313 | 60 | 82 |
| A5 | 19.19 | 139 | 30 | 36 |
| A6 | 17.19 | 277 | 69 | 46 |
| A7 | 17.6 | 859 | 192 | 175 |
| A8 | 19.5 | 644 | 143 | 169 |
| A9 | 17.14 | 677 | 163 | 117 |
| A10 | 18.61 | 667 | 149 | 156 |
>TRINITY_DN101313_c1_g1_i1 from sample A5 / Example spliced isoformTGGTGCTCCTCGTCCGAGTCAGCTTTCCCGCCAAAGATTTCCCGCGAAAATGATCCATCATCTTCATTCTTGCCTAACAAAACCTCCTCAACCCCCCGCCGGGTCGCTCAGATGCATTAGCTGACTATCGGAGATCGATCTTTTACTATTTTCTCAGAAGACCTCTGCCCGGCTTCTCAGAGTTCGAAGTCATGGATTCT
GATCCTTCAACACCTGGGTCTCCAACATCTGGAGGAGGGTTTAGTACCGATCGGCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCAGATGAAGCAGAAGTTGATCCAGACATATTGGGAGAAGATCCAGGCGATGAGGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTCAT
TCAACAAGATTACCAGCGTTTAGAAGCCCAAGATCGATATGAGTCTGCAGACTTGGATGATGAATACCAGGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAATGCATGGTGTTAGTGTTAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAA
TAGAGTTCAGGCCACGACGAAGGGCCCGGGTTGAGCCCCCAATGACTGACCAAACTGAAGAGGAGCCTTACGAGGAGGAAGAAGATGACGAGGGTGAGTATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTCCGGCGTTTCATAGCCAAAAAGTTCAGACAATTTGTACTCAGCTAT
GTGAACCAAAGAAGTGGAAATGGTGAACGTGAATATATTCGACTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGACTATAAGCAGTTCATATTTACACATCCAAATATTGCCATCTGGTTAGCTGATGCTCCTCAGTCTGTGCTTGAAGTGATGGAAGAAGTGGCACTAAATGTTGTGTTGAATCT
ACATCCAAACTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAACCTGCCAGTTTATGATCAGATACGCAATATAAGGCAGGTGCATTTGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAATTGCAGCAAGTTAAATATGATTGTAATAAATGTGGCACTGTTCTAG
GACCTTTCTTTCAAAACTCGTATTCTGAAGTGAAAGTGGGTTCTTGTCCCGAATGCCAATCAAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCAGGCATTGTGCCAGCTGGTCGACTCCCAAGGTACAAAGAAGTCATTCTCTTGAATGATCTCATT
GATTGTGCACGCCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTGTTGAAGCTAACTATGTTACAAAGAAACAAGACTTGTTTTCTGCCTATAAACTGACTGATGAGGATAAAGCAGAGATTGAAAAGCTTTCCAAGGA
TCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATCAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTG
AAAAAACTGCTCAAAGGGCCGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACTGCAGCAGTCCATAAAGATCCTGTGACACGGGAATGGACTCTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTATTTGTTTGATTGATGAGTTCGACAAAATGAATGACCAGGACAGGGTGAGTATCCATGAAGCT
ATGGAGCAGCAGAGCATCAGTATATCCAAGGCTGGAATTGTGACATCATTACAAGCACGGTGTTCTGTGATTGCAGCAGCCAACCCCATAGGGGGAAGGTATGACTCATCAAAAACATTTGCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCACGTTTCGATGTACTGTGTGTTGTGAAGGATGTTGTTGATCCAGT
TAAAGATGAAATGCTTGCAAGCTTTGTTGTTGACAGTCATGCCAAGTCCCAACCTAAAGGTTCCAACATGGAGGAAACGCCTGTAGGCCTTTCTCAGGATGAATCCCCCAATTTGAGCCATTCTTCTGATCCAGAGGTCTTATCTCAAGATACACTTAGGAAGTACATTACTTATGCCAAGCTTAATGTATTCCCAAAAT
TACATGATGTGGATTTGGAAAAGTTGACACATGTATATGCAGATCTGCGTCGGGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAATGATAAGAATGTCTGAAGCACATGCTAGAATGCATCTTAGGAATTATGTTGCTGAGGAGGATGTAGACATGGCTATCAGAGTTCTCTTAGATTCA
TTTATTTCAACCCAGAAGTATGGAGTTCAGAAAGCTTTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTACATCTTCTGCGAGGACTTGTCAAGGATATCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGCCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAG
GACCAAGGCACAAGAGTATGACATTTATGATCTGAAACCATTCTTTAACAGTAGACAATTTACAAGGGCTAATTTCACAGTGGATGAGGCAGAGGGAATTATAAAGCATCCAGTTTCTTGATGAGGCTTGATGCATCAAATCATATTCAGGCTTGTAGCATCAAATATTCAGGCTTGATGTATACAATTCTAATAAACCA
GTTCAGTTGTAATTTCAAATCCAGAAGAAAACTAGATCACGTCCAGTTCACAAGTCCATAGGACTGGCCTACACTAAAATTCAATGGATCTGTCATTACATGGTCATCCTTTGACTGCTTGATTGGCGCAATATACATGCCTCCAAGTATAAACAAAAACTATCTAGGAAGATGGTCTTTCTCCGTGTGCTTTGCTATGA
GACAATTGATCGTATTGTGAAGGCTCTCACATAGGGATTCACCCTTTTGTTTCTATTGGATGCAAGGCCTGTGTGGAAATTTCTGCCTTCTGAGTGCTTCTTGGATTTGTCACCTAGCTCTATGTAGTACATTTGTTTAATTATGTCGGGGTTGAATTCCTTACGCTATTATTTTGAAGTGTATTTGTATGCGGT
>TRINITY_DN101313_c1_g1_i2 from sample A5 / Example unspliced isoform:TGGTGCTCCTCGTCCGAGTCAGCTTTCCCGCCAAAGATTTCCCGCGAAAATGATCCATCATCTTCATTCTTGCCTAACAAAACCTCCTCAACCCCCCGCCGGGTCGCTCAGATGCATTAGCTGACTATCGGAGATCGATCTTTTACTATTTTCTCAGAAGACCTCTGCCCGGCTTCTCAGAGTTCGAAGTCATGGATTCT
GATCCTTCAACACCTGGGTCTCCAACATCTGGAGGAGGGTTTAGTACCGATCGGCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCAGATGAAGCAGAAGTTGATCCAGACATATTGGGAGAAGATCCAGGCGATGAGGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTCAT
TCAACAAGATTACCAGCGTTTAGAAGCCCAAGATCGATATGAGTCTGCAGACTTGGATGATGAATACCAGGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAATGCATGGTGTTAGTGTTAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAA
TAGAGTTCAGGCCACGACGAAGGGCCCGGGTTGAGCCCCCAATGACTGACCAAACTGAAGAGGAGCCTTACGAGGAGGAAGAAGATGACGAGGGTGAGTATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTCCGGCGTTTCATAGCCAAAAAGTTCAGACAATTTGTACTCAGCTAT
GTGAACCAAAGAAGTGGAAATGGTGAACGTGAATATATTCGACTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGACTATAAGCAGTTCATATTTACACATCCAAATATTGCCATCTGGTTAGCTGATGCTCCTCAGTCTGTGCTTGAAGTGATGGAAGAAGTGGCACTAAATGTTGTGTTGAATCT
ACATCCAAACTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAACCTGCCAGTTTATGATCAGATACGCAATATAAGGCAGGTGCATTTGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAATTGCAGCAAGTTAAATATGATTGTAATAAATGTGGCACTGTTCTAG
GACCTTTCTTTCAAAACTCGTATTCTGAAGTGAAAGTGGGTTCTTGTCCCGAATGCCAATCAAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCAGGCATTGTGCCAGCTGGTCGACTCCCAAGGTACAAAGAAGTCATTCTCTTGAATGATCTCATT
GATTGTGCACGCCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTGTTGAAGCTAACTATGTTACAAAGAAACAAGACTTGTTTTCTGCCTATAAACTGACTGATGAGGATAAAGCAGAGATTGAAAAGCTTTCCAAGGA
TCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATCAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTG
AAAAAACTGCTCAAAGGGCCGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACTGCAGCAGTCCATAAAGATCCTGTGACACGGGAATGGACTCTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTATTTGTTTGATTGATGAGTTCGACAAAATGAATGACCAGGACAGGGTGAGTATCCATGAAGCT
ATGGAGCAGCAGAGCATCAGTATATCCAAGGCTGGAATTGTGACATCATTACAAGCACGGTGTTCTGTGATTGCAGCAGCCAACCCCATAGGGGGAAGgtgcaacttcatgaccattactattgatctattttcaacttgagaggtggttattttgctagtcagtttagtcttatattttcttcacattcagGTATGACT
CATCAAAAACATTTGCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCACGTTTCGATGTACTGTGTGTTGTGAAGGATGTTGTTGATCCAGTTAAAGATGAAATGCTTGCAAGCTTTGTTGTTGACAGTCATGCCAAGTCCCAACCTAAAGGTTCCAACATGGAGGAAACGCCTGTAGGCCTTTCTCAGGATGAATCC
CCCAATTTGAGCCATTCTTCTGATCCAGAGGTCTTATCTCAAGATACACTTAGGAAGTACATTACTTATGCCAAGCTTAATGTATTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATGTATATGCAGATCTGCGTCGGGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAAT
GATAAGAATGTCTGAAGCACATGCTAGAATGCATCTTAGGAATTATGTTGCTGAGGAGGATGTAGACATGGCTATCAGAGTTCTCTTAGATTCATTTATTTCAACCCAGAAGTATGGAGTTCAGAAAGCTTTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTACATCTTCTGC
GAGGACTTGTCAAGGATATCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGCCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGACCAAGGCACAAGAGTATGACATTTATGATCTGAAACCATTCTTTAACAGTAGACAATTTACAAGGGCTAATTTCACAGTGGATGAGGCAGAGGGAATTATAAAG
CATCCAGTTTCTTGATGAGGCTTGATGCATCAAATCATATTCAGGCTTGTAGCATCAAATATTCAGGCTTGATGTATACAATTCTAATAAACCAGTTCAGTTGTAATTTCAAATCCAGAAGAAAACTAGATCACGTCCAGTTCACAAGTCCATAGGACTGGCCTACACTAAAATTCAATGGATCTGTCATTACATGGTCA
TCCTTTGACTGCTTGATTGGCGCAATATACATGCCTCCAAGTATAAACAAAAACTATCTAGGAAGATGGTCTTTCTCCGTGTGCTTTGCTATGAGACAATTGATCGTATTGTGAAGGCTCTCACATAGGGATTCACCCTTTTGTTTCTATTGGATGCAAGGCCTGTGTGGAAATTTCTGCCTTCTGAGTGCTTCTTGGAT
TTGTCACCTAGCTCTATGTAGTACATTTGTTTAATTATGTCGGGGTTGAATTCCTTACGCTATTATTTTGAAGTGTATTTGTATGCGGT
Intron 3 GTGGGTATAC ... TTCCCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.4 | 555 | 24.7 | 101 |
| A2 | 10.25 | 438 | 18.3 | 50 |
| A3 | 10.1 | 463 | 24.3 | 52 |
| A4 | 15.02 | 379 | 23.7 | 67 |
| A5 | 11.62 | 251 | 10.3 | 33 |
| A6 | 12.5 | 112 | 3 | 16 |
| A7 | 9.85 | 485 | 18 | 53 |
| A8 | 13.66 | 139 | 6 | 22 |
| A9 | 9.44 | 403 | 15.3 | 42 |
| A10 | 9.58 | 472 | 25.3 | 50 |
>TRINITY_DN112658_c0_g1_i1 from sample A1 / Example spliced isoformAAGATTTCCCGCGAAAATGATCCATCATCTTCATTCTTGCCTAACAAAACCTCCTCAACCCCCCGCCGGGTCGCTCAGATGCATTAGCTGACTATCGGAGATCGATCTTTTACTATTTTCTCAGAAGACCTCTGCCCGGCTTCTCAGAGTTCGAAGTCATGGATTCTGATCCTTCAACACCTGGGTCTCCAACATCTGGA
GGAGGGTTTAGTACCGATCGGCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCAGATGAAGCAGAAGTTGATCCAGACATATTGGGAGAAGATCCAGGCGATGAGGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTCATTCAACAAGATTACCAGCGTTTAGAAGCCCAAGA
TCGATATGAGTCTGCAGACTTGGATGATGAATACCAGGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAATGCATGGTGTTAGTGTTAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTCAGGCCACGACGAAGGGCCCGGGTTG
AGCCCCCAATGACTGACCAAACTGAAGAGGAGCCTTACGAGGAGGAAGAAGATGACGAGGGTGAGTATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTCCGGCGTTTCATAGCCAAAAAGTTCAGACAATTTGTACTCAGCTATGTGAACCAAAGAAGTGGAAATGGTGAACGTGAA
TATATTCGACTGATCAATGAGATGGTTGCTGCAAACAAGTGTAGCTTGGAGATTGACTATAAGCAGTTCATATTTACACATCCAAATATTGCCATCTGGTTAGCTGATGCTCCTCAGTCTGTGCTTGAAGTGATGGAAGAAGTGGCACTAAATGTTGTGTTGAATCTACATCCAAACTATAGAAACATTCATGATAAAAT
CTATGTTCGAATTACAAACCTGCCAGTTTATGATCAGATACGCAATATAAGGCAGGTGCATTTGAATACTATGATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAATTGCAGCAAGTTAAATATGATTGTAATAAATGTGGCACTGTTCTAGGACCTTTCTTTCAAAACTCGTATTCTGAAGTGA
AAGTGGGTTCTTGTCCCGAATGCCAATCAAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAACTATCAGAAATTATCACTTCAAGAAAGTCCAGGCATTGTGCCAGCTGGTCGACTCCCAAGGTACAAAGAAGTCATTCTCTTGAATGATCTCATTGATTGTGCACGCCCTGGAGAAGAAATTGAGGTG
ACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTGTTGAAGCTAACTATGTTACAAAGAAACAAGACTTGTTTTCTGCCTATAAACTGACTGATGAGGATAAAGCAGAGATTGAAAAGCTTTCCAAGGATCCCCGAATTGGAGAACGGATTATAAAATCTAT
AGCTCCATCTATTTATGGTCATGAAGACATCAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAGAATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTGAAAAAACTGCTCAAAGGGCCGTATATACAACAG
GGAAGGGTGCCTCAGCAGTTGGGCTCACTGCAGCAGTCCATAAAGATCCTGTGACACGGGAATGGACTCTAGAAGGTGGTGCATTGGTCCTTGCTGACAGGGGTATTTGTTTGATTGATGAGTTCGACAAAATGAATGACCAGGACAGGGTGAGTATCCATGAAGCTATGGAGCAGCAGAGCATCAGTATATCCAAGGCT
GGAATTGTGACATCATTACAAGCACGGTGTTCTGTGATTGCAGCAGCCAACCCCATAGGGGGAAGGTATGACTCATCAAAAACATTTGCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCACGTTTCGATGTACTGTGTGTTGTGAAGGATGTTGTTGATCCAGTTAAAGATGAAATGCTTGCAAGCTTTGTTGTTGA
CAGTCATGCCAAGTCCCAACCTAAAGGTTCCAACATGGAGGAAACGCCTGTAGGCCTTTCTCAGGATGAATCCCCCAATTTGAGCCATTCTTCTGATCCAGAGGTCTTATCTCAAGATACACTTAGGAAGTACATTACTTATGCCAAGCTTAATGTATTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATG
TATATGCAGATCTGCGTCGGGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAATGATAAGAATGTCTGAAGCACATGCTAGAATGCATCTTAGGAATTATGTTGCTGAGGAGGATGTAGACATGGCTATCAGAGTTCTCTTAGATTCATTTATTTCAACCCAGAAGTATGGAGTTCAGAAA
GCTTTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTACATCTTCTGCGAGGACTTGTCAAGGATATCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGCCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGACCAAGGCACAAGAGTATGACATTTATGATCT
GAAACCATTCTTTAACAGTAGACAATTTACAAGGGCTAATTTCACAGTGGATGAGGCAGAGGGAATTATAAAGCATCCAGTTTCTTGATGAGGCTTGATGCATCAAATCATATTCAGGCTTGTAGCATCAAATATTCAGGCTTGATGTATACAATTTTAATAAACCAGTTCAGTTGTAATTTCAAATCCAGAAGAAAACT
AGATCACGTCCAGTTCACAAGTCCATAGGACTGGCCTACACTAAAATTCAATGGATCTGTCATTACATGGTCATCCTTTGACTGCTTGATTGGCGCAATATACATGCCTCCAAGTATAAACAAAAACTATCTAGGAAGATGGTCTTTCTCCGTGTGCTTTGCTATGAGACAATTGATCGTATTGTGAAGGCTCTCACATA
GGGATTCACCCTTTTGTTTCTATTGGATGCAAGGCCTGTGTGGAAATTTCTGCCTTCTGAGTGCTTCTTGGATTTGTCACCTAGCTCTATGTAGTACATTTGTTTAATTATGTCGGGGTTGAATTCCTTACGCTG
>TRINITY_DN112658_c0_g1_i2 from sample A1 / Example unspliced isoform:AAGATTTCCCGCGAAAATGATCCATCATCTTCATTCTTGCCTAACAAAACCTCCTCAACCCCCCGCCGGGTCGCTCAGATGCATTAGCTGACTATCGGAGATCGATCTTTTACTATTTTCTCAGAAGACCTCTGCCCGGCTTCTCAGAGTTCGAAGTCATGGATTCTGATCCTTCAACACCTGGGTCTCCAACATCTGGA
GGAGGGTTTAGTACCGATCGGCTTCCTCCAACAAGCAGCTCACGCCATAGAAGCTCGACACAGTCAATATCAGATGAAGCAGAAGTTGATCCAGACATATTGGGAGAAGATCCAGGCGATGAGGAGGACGAAGGAGAGGGGGAGGATCTTTACAATGATAACTTCATTCAACAAGATTACCAGCGTTTAGAAGCCCAAGA
TCGATATGAGTCTGCAGACTTGGATGATGAATACCAGGATGAAAGAGGATATGATGAGATCATGGCAGATCGTCGTGCAGCAGAGGCTGAGCTTGATGCAATGCATGGTGTTAGTGTTAACAGAAAGCTTCCTAGGATTCTCCGTGATCAAGACACGGATGATGAAATAGAGTTCAGGCCACGACGAAGGGCCCGGGTTG
AGCCCCCAATGACTGACCAAACTGAAGAGGAGCCTTACGAGGAGGAAGAAGATGACGAGGGTGAGTATGAAATGTACAATGTTCAAGGAACATTAAGAGAATGGGTCACTCGAGATGAAGTCCGGCGTTTCATAGCCAAAAAGTTCAGACAATTTGTACTCAGCTATGTGAACCAAAGAAGTGGAAATGGTGAACGTGAA
TATATTCGACTGATCAATGAGATGGTTGCTGgtgggtatacacttttccattctagctttgaaacttgttgtactaatttaatcaattatgttttgatgatttagcccatttttgcagaggcagatatctagactaaaactatcttgctaggtacttgaacgttacatcaaaatatgcaaggtttaggcaaaacttaaat
tgactttaccttgataaaaacagtgacacaactcagtgcgaaataaggaatatctattacagaattttatcctgacttatttaacagtgcaaaatgacccatattctcttacttctccatataaaacctaatatcttttgtcttggtcttcccttcagCAAACAAGTGTAGCTTGGAGATTGACTATAAGCAGTTCATAT
TTACACATCCAAATATTGCCATCTGGTTAGCTGATGCTCCTCAGTCTGTGCTTGAAGTGATGGAAGAAGTGGCACTAAATGTTGTGTTGAATCTACATCCAAACTATAGAAACATTCATGATAAAATCTATGTTCGAATTACAAACCTGCCAGTTTATGATCAGATACGCAATATAAGGCAGGTGCATTTGAATACTATG
ATTCGAATTGGAGGGGTGGTAACTAGGAGGTCTGGAGTTTTCCCTCAATTGCAGCAAGTTAAATATGATTGTAATAAATGTGGCACTGTTCTAGGACCTTTCTTTCAAAACTCGTATTCTGAAGTGAAAGTGGGTTCTTGTCCCGAATGCCAATCAAAGGGGCCATTTACAGTTAACATTGAACAGACAATATATAGGAA
CTATCAGAAATTATCACTTCAAGAAAGTCCAGGCATTGTGCCAGCTGGTCGACTCCCAAGGTACAAAGAAGTCATTCTCTTGAATGATCTCATTGATTGTGCACGCCCTGGAGAAGAAATTGAGGTGACTGGCACATACACAAATAATTTTGATATGTCTCTAAACACTAAGAATGGCTTTCCAGTCTTTGCAACAGTTG
TTGAAGCTAACTATGTTACAAAGAAACAAGACTTGTTTTCTGCCTATAAACTGACTGATGAGGATAAAGCAGAGATTGAAAAGCTTTCCAAGGATCCCCGAATTGGAGAACGGATTATAAAATCTATAGCTCCATCTATTTATGGTCATGAAGACATCAAGACTGGAATAGCTCTTGCAATGTTTGGAGGCCAAGAAAAG
AATGTCAAAGGGAAACATCGTCTAAGAGGAGACATAAATGTCCTCCTCCTTGGTGATCCAGGAACAGCAAAATCTCAATTTCTGAAGTATGTTGAAAAAACTGCTCAAAGGGCCGTATATACAACAGGGAAGGGTGCCTCAGCAGTTGGGCTCACTGCAGCAGTCCATAAAGATCCTGTGACACGGGAATGGACTCTAGA
AGGTGGTGCATTGGTCCTTGCTGACAGGGGTATTTGTTTGATTGATGAGTTCGACAAAATGAATGACCAGGACAGGGTGAGTATCCATGAAGCTATGGAGCAGCAGAGCATCAGTATATCCAAGGCTGGAATTGTGACATCATTACAAGCACGGTGTTCTGTGATTGCAGCAGCCAACCCCATAGGGGGAAGGTATGACT
CATCAAAAACATTTGCTCAAAACGTGGAGCTCACTGATCCTATTCTCTCACGTTTCGATGTACTGTGTGTTGTGAAGGATGTTGTTGATCCAGTTAAAGATGAAATGCTTGCAAGCTTTGTTGTTGACAGTCATGCCAAGTCCCAACCTAAAGGTTCCAACATGGAGGAAACGCCTGTAGGCCTTTCTCAGGATGAATCC
CCCAATTTGAGCCATTCTTCTGATCCAGAGGTCTTATCTCAAGATACACTTAGGAAGTACATTACTTATGCCAAGCTTAATGTATTCCCAAAATTACATGATGTGGATTTGGAAAAGTTGACACATGTATATGCAGATCTGCGTCGGGAATCATCGCATGGTCAAGGAGTTCCTATTGCAGTAAGGCATATTGAGTCAAT
GATAAGAATGTCTGAAGCACATGCTAGAATGCATCTTAGGAATTATGTTGCTGAGGAGGATGTAGACATGGCTATCAGAGTTCTCTTAGATTCATTTATTTCAACCCAGAAGTATGGAGTTCAGAAAGCTTTGCAGAAGAGTTTCAAAAAATATATCACTTACAAGAAGGATTACAACGAGCTGCTGCTACATCTTCTGC
GAGGACTTGTCAAGGATATCTTGCGTCTTGAAGAACTGATGTCTGGGACTAGACCCCGCCTCAATCAAGTTGAGATTAAAGTAGAAGATTTAAGGACCAAGGCACAAGAGTATGACATTTATGATCTGAAACCATTCTTTAACAGTAGACAATTTACAAGGGCTAATTTCACAGTGGATGAGGCAGAGGGAATTATAAAG
CATCCAGTTTCTTGATGAGGCTTGATGCATCAAATCATATTCAGGCTTGTAGCATCAAATATTCAGGCTTGATGTATACAATTTTAATAAACCAGTTCAGTTGTAATTTCAAATCCAGAAGAAAACTAGATCACGTCCAGTTCACAAGTCCATAGGACTGGCCTACACTAAAATTCAATGGATCTGTCATTACATGGTCA
TCCTTTGACTGCTTGATTGGCGCAATATACATGCCTCCAAGTATAAACAAAAACTATCTAGGAAGATGGTCTTTCTCCGTGTGCTTTGCTATGAGACAATTGATCGTATTGTGAAGGCTCTCACATAGGGATTCACCCTTTTGTTTCTATTGGATGCAAGGCCTGTGTGGAAATTTCTGCCTTCTGAGTGCTTCTTGGAT
TTGTCACCTAGCTCTATGTAGTACATTTGTTTAATTATGTCGGGGTTGAATTCCTTACGCTG