sp|Q8L5U0|CSN4_ARATH ----> COP9 signalosome complex subunit 4

Intron 1 GTTTTTCTGA ... ATGTATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	22	78	22	5
A2	26.92	38	14	1
A3	13.21	46	7	8
A4	32.26	42	20	2
A5	35.71	18	10	0
A6	24.44	102	33	0
A7	20.33	145	37	0
A8	13.22	105	16	0
A9	15.33	116	21	0
A10	16.52	96	19	0

>TRINITY_DN105752_c0_g1_i3 from sample A3 / Example spliced isoform

GAAAACATGATGTGTGATTTTCCATTTGGAAGAGGGGAGGCAACCGGAGATATTCGAACCAGACAAACGGATTGAGAGAAAATCCATCTCCTCACAGAGCGAGCAACGCAAATTCAAGGACAATGGCGGGCGAAATAGAGAGTGCTCTGCAAAGCGCTGCAGCCATTACTGATCAGAGGCAGAAGATAGAGCAGTACAAG
CTTATACTCGCCTCAATTTTCTCCAGCAATAATGTCCAAAATGCGAAGGCTTTCATTGATCACATGGTGTCTGACGATGTGCCACTGGTGGCTTCAAGGCAGTTGCTGCAAATATTTGCGCAAGAGCTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGATTGCCCACTATGCTTTGGCCCAAATTCAGCCCAGGGTTGT
TTCCTTCGAAGAGCAGGTATCCATCATCAGGGAGAAGCTTGCTAAACTATTTGAGACTGAACAACAATGGTCAAAAGCTGCTCAAATGCTTAGTGGGATTGACCTAGATTCTGGCATCAGGATGCTTGATGATACATACAAACTATCAAAGTGTGTCCATATTGCTCGCTTATACCTGGAGGATGATGATGCTGTTAATG
CAGAAACTTATATTAAAAAGGCTTCTTTTTTAGTCAGCAGTAGCCATGATGAAGCATTAAATTTAGAATACAAGGTTTGTTATGCACGCATTTTGGATATGAAACGGAAATTTCTGGAAGCTGCACTTCGTTATTATGAGATATCACAAATTGAAAAGCGCCAAATTGGAGACACGTACGGTTCACATTTTGTAATGAAG
TTTGTTTTATGTAGTTGTAAAGGTTATTTTGTGCTGTTGCCAACATCAAGTGACAGGTCTTTCACTCACCTTTAGTTAGCATATGTGTTAACTGATAAATATTGTTGGAATTATGTTACAGAGGAGAAAAATATAACGTTTGCATCCATCAGTGTATGAGTTTTTAGCTCATGGCTATCTTGAGTGAATTTTGAATTTTG
CCTACATATTTCTTCTTCTTGAAAAGAGACCAGAACAATCTTTTATTTTATTAGTGGCTTCACCATGAGCAATAAATTCAGAATTTGGGAACTGAC

>TRINITY_DN105752_c0_g1_i1 from sample A3 / Example unspliced isoform:

TGGTGTCTGACGATGTGCCACTGGTGGCTTCAAGGCAGTTGCTGCAAATATTTGCGCAAGAGCTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGATTGCCCACTATGCTTTGGCCCAAATTCAGCCCAGGGTTGTTTCCTTCGAAGAGCAGGTATCCATCATCAGGGAGAAGCTTGCTAAACTATTTGAGACTGAACAA
CAATGGTCAAAAGCTGCTCAAATGCTTAGTGGGATTGACCTAGATTCTGGCATCAGgtttttctgaaagattattctgtttgtttcttgcctttggtaatttttgtaaatacaataggaacagtacttgcagcttctgaaagtttccattttttcagtaataatctcttgcagcagctcaaatgacaaattgttgtttta
gtttattatcattgttaatttcatgtatacagGATGCTTGATGATACATACAAACTATCAAAGTGTGTCCATATTGCTCGCTTATACCTGGAGGTACTGTTGGATAAAATCTTAGCTTCAATGGCTATGGATCCTTTGCTTTGGTTCCTTCATCTATATTGCTATTATATACATCAAAGTCACTG

Intron 2 GTATATCTTG ... GTGTGCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	24.44	34	3	19
A2	32.43	25	16	8
A3	22.73	34	12	8
A4	17.95	32	4	10
A5	21.95	16	4	5
A6	18.75	117	18	36
A7	19.39	106	19	32
A8	20	136	28	40
A9	18.6	116	23	30
A10	20.62	102	23	30

>TRINITY_DN108039_c0_g2_i4 from sample A2 / Example spliced isoform

GAAAACATGATGTGTGATTTTCCATTTGGAAGAGGGGAGGCAACCGGAGATATTCGAACCAGACAAACGGATTGAGAGAAAATCCATCTCCTCACAGAGCGAGCAACGCAAATTCAAGGACAATGGCGGGCGAAATAGAGAGTGCTCTGCAAAGCGCTGCAGCCATTACTGATCAGAGGCAGAAGATAGAGCAGTACAAG
CTTATACTCGCCTCAATTTTCTCCAGCAATAATGTCCAAAATGCGAAGGCTTTCATTGATCACATGGTGTCTGACGATGTGCCACTGGTGGCTTCAAGGCAGTTGCTGCAAATATTTGCGCAAGAGCTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGATTGCCCACTATGCTTTGGCCCAAATTCAGCCCAGGGTTGT
TTCCTTCGAAGAGCAGGTATCCATCATCAGGGAGAAGCTTGCTAAACTATTTGAGACTGAACAACAATGGTCAAAAGCTGCTCAAATGCTTAGTGGGATTGACCTAGATTCTGGCATCAGGATGCTTGATGATACATACAAACTATCAAAGTGTGTCCATATTGCTCGCTTATACCTGGAGGATGATGATGCTGTTAATG
CAGAAACTTATATTAAAAAGGCTTCTTTTTTAGTCAGCAGTAGCCATGATGAAGCATTAAATTTAGAATACAAGGTTTGTTATGCACGCATTTTGGATATGAAACGGAAATTTCTGGAAGCTGCACTTCGTTATTATGAGATATCACAAATTGAAAAGCGCCAAATTGGAGACACGTGGATAGATGAGGATGCACTCCAA
CAAGAACTTAGTGCTGCTGTGACATGCACTATTCTTGCTGCTGCTGGGCCCCAACGCTCCAGGGTGCTTGCTACACTTTACAAGGATGAAAGATGTTCCAAACTGAAGATCTACCCAATTTTGCAGAAGGTTTATCTAGAAAGAATTCTTAGGAAGCCAGAAATTGATGCATTTGCTGAAGAACTCAAACCCCATCAGAA
AGCACTCCTACCGGACAACTCAACTGTTCTAGATCGTGCTATGATTGAGCATAATCTTCTCAGTGCAAGCAAACTTTATACAAATATAAGCTTTGAAGAGCTGGGCACATTGCTTGGCATTGCACCCGAAAAGGCTGAGAAAATAGCTTCACGGATGATTTGTGAGGATCGCATGAGGGGCTCAATTGATCAGGTTGAGG
CGGTCATACACTTTGAGGATGATACAGAAGAGCTGCAGCAGTGGGACCAGCAAATTGTAGGCTTGTGTCAAGCGCTAAATGATGTCCTGGATAGCATGGCTAAGAAAGGGCTGACTATAGCAGTGTAAGAGAAATTAGTGTGATAAGAAGATTCTTCGAGGAAATAATCACAGTATTCTGTATTTAATTTCCTCTGTTCC
ATTTGTGGTTGATACATTCATTGTTGTTTAGATAACTGAAGTACGGTGGTGCTTTTTTTGCCACTTTTGTGGCTAATGTATTCTGAAAACAAGCAAGCACGGTGTAAGTTTTGAATAAACTGTCAGATATAGAATAATTTTCTTGGCTACATTTGTGGTTAAAAGGTTTTTTTAGATGAAGTGAAGAAGCCAAGTGGTGC
TCTTTTTTGTGAATGTGACAAGCTTTTTTGGCTTGTCTATTCTGAAAACAAGCACATGGTGTTAGTTCTGAATAAAGTGGCAAATTCAGAACTGTTTGGACTGCATTGGAGCATGATAGACTAACAGTGTCACTCTTACCATTACATACAGATGATGTGATTTAGTTATCATTGCTGTAACCTGTTTGATTAACTATAAA
TGCA

>TRINITY_DN108039_c0_g2_i3 from sample A2 / Example unspliced isoform:

GAAAACATGATGTGTGATTTTCCATTTGGAAGAGGGGAGGCAACCGGAGATATTCGAACCAGACAAACGGATTGAGAGAAAATCCATCTCCTCACAGAGCGAGCAACGCAAATTCAAGGACAATGGCGGGCGAAATAGAGAGTGCTCTGCAAAGCGCTGCAGCCATTACTGATCAGAGGCAGAAGATAGAGCAGTACAAG
CTTATACTCGCCTCAATTTTCTCCAGCAATAATGTCCAAAATGCGAAGGCTTTCATTGATCACATGGTGTCTGACGATGTGCCACTGGTGGCTTCAAGGCAGTTGCTGCAAATATTTGCGCAAGAGCTAGGGCAGTTAGAGCCCGAGGCTCACAAGGAGATTGCCCACTATGCTTTGGCCCAAATTCAGCCCAGGGTTGT
TTCCTTCGAAGAGCAGGTATCCATCATCAGGGAGAAGCTTGCTAAACTATTTGAGACTGAACAACAATGGTCAAAAGCTGCTCAAATGCTTAGTGGGATTGACCTAGATTCTGGCATCAGGATGCTTGATGATACATACAAACTATCAAAGTGTGTCCATATTGCTCGCTTATACCTGGAGGATGATGATGCTGTTAATG
CAGAAACTTATATTAAAAAGGCTTCTTTTTTAGTCAGCAGTAGCCATGATGAAGCATTAAATTTAGAATACAAGGTTTGTTATGCACGCATTTTGGATATGAAACGGAAATTTCTGGAAGCTGCACTTCGTTATTATGAGATATCACAAATTGAAAAGCGCCAAATTGGAGACACGTGGATAGATGAGGATGCACTCCAA
CAAGAACTTAGTGCTGCTGTGACATGCACTATTCTTGCTGCTGCTGGGCCCCAACGCTCCAGGGTGCTTGCTACACTTTACAAGGATGAAAGATGTTCCAAACTGAAGATCTACCCAATTTTGCAGAAGgtatatcttgcataaatattggttgcttaagatgcatcaatgtgtaatctattcacttttgtgttagtttg
gttaaacagagtattagctgtcaactatttcaagttaatttatgtttaaacattttactgtattttttcattatatggatatgtgtgctcagGTTTATCTAGAAAGAATTCTTAGGAAGCCAGAAATTGATGCATTTGCTGAAGAACTCAAACCCCATCAGAAAGCACTCCTACCGGACAACTCAACTGTTCTAGATCGT
GCTATGATTGAGCATAATCTTCTCAGTGCAAGCAAACTTTATACAAATATAAGCTTTGAAGAGCTGGGCACATTGCTTGGCATTGCACCCGAAAAGGCTGAGAAAATAGCTTCACGGATGATTTGTGAGGATCGCATGAGGGGCTCAATTGAT