sp|Q6S591|JAG_ARATH ----> Zinc finger protein JAGGED

Intron 1 GTAAGAATCT ... AATTGTCCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	45	22	7	29
A2	28.81	21	7	10
A3	40.98	18	10	15
A4	56.52	10	8	18
A5	60	5	5	10
A6	44.68	13	11	10
A7	45.53	64	40	67
A8	44.35	69	39	71
A9	32.74	76	23	51
A10	37.93	63	30	47

>TRINITY_DN124631_c2_g1_i5 from sample A2 / Example spliced isoform

CACACGAACATGCATCGTAAAGAAAAAAATGATGAAGAATATAAAGAGGCTCTACATATTGTGGAGGAACAAGGAGGCCACCAACAAAGCTTTCTCCAAATTCCACACTCTTCACTGGTTGATTTAATATCTAGGGTACCAATGCAAACCCACCAACAAAGAAATTTCTATCATGCAGCTTCACTAAATAATCCATATGC
ACTAGACCAATATCTCAATGATCTTATACATGAAAAACTAGAATACTTGACATCTGCTGCTAACCAAATCCAACCACCTTATGAAAGGAGGAATCATGATACAATGCTAGGAATGCCATATGAAAGAAATCATTTTTCCCCTTCTGACCCAACAAACACAAGTGGTATTTTGCCTCCCGTTGGAGCCCAAGGCATGCACC
CAAACTATCTTCCCCAACAATCTAGGGAATCAACAAGTGTAGTCTCAGAAAGTCGCTTCAATCCGGGTTTTCAATCCTTAGATAGTTATCCTATGCAATCAGAAGTGTATGGTGCAGAATTCTTAGGCCAGGCATCACAAGCACAACAATTCAACTTCCATTATTCAGTTCCATCCAGTTTTCATTCACCAGGAATTGGC
CAGTTCACTATGGAGGGAGAAACTGCGCAAGATAGGCAAACAACAAGGAGTATCAATATTCATGGCGCAGGTTCTTCTTCATTGTCTCTTGAGATTTACAACAAACATAATCAATATTTTCCTCAAGATCCCTGAGATAATTTGTTTCAAGGTCGAACAAGAAAAGGCGTTTAGAATTCCCTATCAAGGAAGTCTTCATT
TTTTCAAAGGGGAATTCTTCTTCCAAGAAGAAACTTATTTTTTTAAGTTATCAACATATTATTTTTAATTATTGTTTTAATAAATAATTTTAGGAAAATAGTATTTTGTTAAGACATTAAAACTTATTATAAACCAATGATTTTGACAATGACGATAGTCATCAACATTTATTTAATTTAATATTATGTTTAAAAAAAA

>TRINITY_DN124631_c2_g1_i13 from sample A2 / Example unspliced isoform:

CACACGAACATGCATCGTAAAGAAAAAAATGATGAAGAATATAAAGAGGCTCTACATATTGTGGAGGAACAAGGAGGCCACCAACAAAGCTTTCTgtaagaatctttaaagcatattttttctttcctctctcaacttatattattaaatttagctacaactaaaaatgattttgattttctttgtaaattgtccagCCA
AATTCCACACTCTTCACTGGTTGATTTAATATCTAGGGTACCAATGCAAACCCACCAACAAAGAAATTTCTATCATGCAGCTTCACTAAATAATCCATATGCACTAGACCAATATCTCAATGATCTTATACATGAAAAACTAGAATACTTGACATCTGCTGCTAACCAAATCCAACCACCTTATGAAAGGAGGAATCATG
ATACAATGCTAGGAATGCCATATGAAAGAAATCATTTTTCCCCTTCTGACCCAACAAACACAAGTGGTATTTTGCCTCCCGTTGGAGCCCAAGGCATGCACCCAAACTATCTTCCCCAACAATCTAGGGAATCAACAAGTGTAGTCTCAGAAAGTCGCTTCAATCCGGGTTTTCAATCCTTAGATAGTTATCCTATGCAA
TCAGAAGTGTATGGTGCAGAATTCTTAGGCCAGGCATCACAAGCACAACAATTCAACTTCCATTATTCAGTTCCATCCAGTTTTCATTCACCAGGAATTGGCCAGTTCACTATGGAGGGAGAAACTGCGCAAGATAGGCAAACAACAAGGAGTATCAATATTCATGGCGCAGGTTCTTCTTCATTGTCTCTTGAGATTTA
CAACAAACATAATCAATATTTTCCTCAAGATCCCTGAGATAATTTGTTTCAAGGTCGAACAAGAAAAGGCGTTTAGAATTCCCTATCAAGGAAGTCTTCATTTTTTCAAAGGGGAATTCTTCTTCCAAGAAGAAACTTATTTTTTTAAGTTATCAACATATTATTTTTAATTATTGTTTTAATAAATAATTTTAGGAAAA
TAGTATTTTGTTAAGACATTAAAACTTATTATAAACCAATGATTTTGACAATGACGATAGTCATCAACATTTATTTAATTTAATATTATGTTTAAAAAAAA